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* biology/snpeff: Update to 5.1Jason W. Bacon2022-12-192-4/+4
* biology/pooler: update to 1.86Silas S. Brown2022-12-192-4/+5
* biology/biolibc-tools: Update to 0.1.4.1Jason W. Bacon2022-12-132-4/+5
* biology/biolibc-tools: Update to 0.1.4Jason W. Bacon2022-12-123-5/+6
* biology/rna-seq: Metaport for RNA-Seq analysisJason W. Bacon2022-12-124-0/+30
* biology/fasda: Fast and simple differential analysisJason W. Bacon2022-12-125-0/+44
* biology/fastq-trim: Update to 0.1.2Jason W. Bacon2022-12-113-7/+10
* biology/vcf-split: Update to 0.1.5-4Jason W. Bacon2022-12-112-4/+5
* biology/peak-classifier: Update to 0.1.4-5Jason W. Bacon2022-12-113-5/+5
* biology/biolibc: Update to 0.2.4Jason W. Bacon2022-12-112-4/+4
* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-12-115-4/+5
* biology/cytoscape: Broken on armv6, armv7Yuri Victorovich2022-12-101-0/+3
* biology/metaeuk: Fix build on systems withour OpenMP enabledYuri Victorovich2022-12-101-4/+4
* biology/libcombine: Update 0.2.19 -> 0.2.20Yuri Victorovich2022-12-083-10/+10
* biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich2022-12-064-0/+50
* Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"Rene Ladan2022-12-062-6/+0
* biology/py-biopython: Update to 1.80Wen Heping2022-12-052-5/+5
* biology/metaeuk: Broken on systems where OpenMP isn't enabledYuri Victorovich2022-12-021-0/+4
* biology/metaeuk: append missing bracketPiotr Kubaj2022-12-011-1/+1
* biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=nativePiotr Kubaj2022-12-011-0/+7
* biology/taxonkit: Update 0.13.0 -> 0.14.0Yuri Victorovich2022-11-292-7/+6
* */*: bump PORTREVISION after the upgrade of math/suitesparse*Thierry Thomas2022-11-271-1/+1
* biology/gatk: Update 4.2.6.1 -> 4.3.0.0Yuri Victorovich2022-11-262-8/+6
* biology/cytoscape: Fix buildYuri Victorovich2022-11-261-1/+1
* biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich2022-11-264-0/+47
* biology/augustus: New port: Genome annotation toolYuri Victorovich2022-11-257-0/+1619
* biology/barrnap: Update descrYuri Victorovich2022-11-241-6/+8
* biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich2022-11-245-0/+47
* biology/cytoscape: Unbreak by re-adding and using maven-3.6.3Yuri Victorovich2022-11-241-2/+0
* biology/megahit: Add cmake patch to respect ports build flagsJason W. Bacon2022-11-242-0/+18
* biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon2022-11-225-0/+45
* graphics/proj: Update to 9.1.0Loïc Bartoletti2022-11-171-0/+1
* biology/paml: Update to 4.10.6Joseph Mingrone2022-11-123-15/+6
* biology/py-pysam: Update 0.19.1 -> 0.20.0Yuri Victorovich2022-11-102-11/+12
* biology/bowtie2: fix build on powerpc64*Piotr Kubaj2022-11-091-2/+2
* biology/bowtie2: Update to 2.5.0Jason W. Bacon2022-11-043-8/+12
* biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.Stephen Montgomery-Smith2022-10-262-4/+8
* */*: Bump PORTREVISION for consumers of libunistringDaniel Engberg2022-10-221-1/+1
* biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich2022-10-217-0/+119
* biology/tRNAscan-SE: Update to 2.0.11Motomichi Matsuzaki2022-10-124-10/+14
* biology/infernal: Update to 1.1.4Motomichi Matsuzaki2022-10-124-41/+11
* biology/jalview: Update 2.11.1.4 -> 2.11.2.5Yuri Victorovich2022-10-112-8/+8
* biology/hmmer: Update to 3.3.2Jason W. Bacon2022-10-113-22/+11
* biology/biosoup: Update g20201216 -> 0.10.0-2Yuri Victorovich2022-10-102-6/+8
* biology/biosig: Update 2.4.2 -> 2.4.3Yuri Victorovich2022-10-092-4/+4
* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-10-065-3/+5
* biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich2022-10-034-0/+31
* biology/rubygem-bio: Update to 2.0.4Po-Chuan Hsieh2022-10-032-4/+4
* devel/grpc: Update to 1.49.0Po-Chuan Hsieh2022-10-031-1/+1
* biology/hyphy: Not broken on systems where OpenMP isn't availableYuri Victorovich2022-10-011-4/+0
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