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biology
Mode
Name
Size
-rw-r--r--
Makefile
5738
log
plain
blame
d---------
abyss
178
log
plain
d---------
ad2vcf
109
log
plain
d---------
artemis
146
log
plain
d---------
augustus
178
log
plain
d---------
avida
141
log
plain
d---------
babel
141
log
plain
d---------
bamtools
178
log
plain
d---------
bamutil
141
log
plain
d---------
barrnap
146
log
plain
d---------
bbmap
178
log
plain
d---------
bcftools
178
log
plain
d---------
bedtools
178
log
plain
d---------
bfc
141
log
plain
d---------
bio-mocha
178
log
plain
d---------
bioawk
141
log
plain
d---------
biococoa
146
log
plain
d---------
biolibc-tools
146
log
plain
d---------
biolibc
146
log
plain
d---------
bioparser
146
log
plain
d---------
biosig
178
log
plain
d---------
biosoup
109
log
plain
d---------
biostar-tools
180
log
plain
d---------
bolt-lmm
178
log
plain
d---------
bowtie
178
log
plain
d---------
bowtie2
178
log
plain
d---------
bwa
141
log
plain
d---------
canu
178
log
plain
d---------
cd-hit
178
log
plain
d---------
cdbfasta
141
log
plain
d---------
checkm
109
log
plain
d---------
clustal-omega
146
log
plain
d---------
clustalw
141
log
plain
d---------
cufflinks
141
log
plain
d---------
cytoscape
109
log
plain
d---------
ddocent
178
log
plain
d---------
diamond
109
log
plain
d---------
dsr-pdb
178
log
plain
d---------
edlib
146
log
plain
d---------
emboss
178
log
plain
d---------
erminej
178
log
plain
d---------
exonerate
146
log
plain
d---------
fasda
146
log
plain
d---------
fasta
178
log
plain
d---------
fasta3
178
log
plain
d---------
fastahack
178
log
plain
d---------
fastdnaml
146
log
plain
d---------
fastool
109
log
plain
d---------
fastp
141
log
plain
d---------
fastq-trim
146
log
plain
d---------
fastqc
146
log
plain
d---------
fasttree
141
log
plain
d---------
fastx-toolkit
178
log
plain
d---------
figtree
109
log
plain
d---------
flash
141
log
plain
d---------
fluctuate
141
log
plain
d---------
freebayes
141
log
plain
d---------
garlic
178
log
plain
d---------
gatk
141
log
plain
d---------
gcta
141
log
plain
d---------
gemma
178
log
plain
d---------
generand
109
log
plain
d---------
gff2ps
109
log
plain
d---------
gffread
141
log
plain
d---------
gmap
185
log
plain
d---------
gperiodic
146
log
plain
d---------
graphlan
146
log
plain
d---------
groopm
141
log
plain
d---------
haplohseq
178
log
plain
d---------
hhsuite
178
log
plain
d---------
hisat2
178
log
plain
d---------
hmmer
185
log
plain
d---------
htslib
178
log
plain
d---------
hyphy
178
log
plain
d---------
igv
178
log
plain
d---------
infernal
146
log
plain
d---------
iolib
178
log
plain
d---------
iqtree
141
log
plain
d---------
jalview
141
log
plain
d---------
jellyfish
178
log
plain
d---------
kallisto
141
log
plain
d---------
kmcp
109
log
plain
d---------
lamarc
141
log
plain
d---------
libbigwig
141
log
plain
d---------
libcombine
178
log
plain
d---------
libgff
146
log
plain
d---------
libgtextutils
178
log
plain
d---------
libneurosim
146
log
plain
d---------
libnuml
146
log
plain
d---------
libsbml
178
log
plain
d---------
libsedml
146
log
plain
d---------
linux-foldingathome
178
log
plain
d---------
mafft
178
log
plain
d---------
mapm3
178
log
plain
d---------
megahit
178
log
plain
d---------
metaeuk
109
log
plain
d---------
migrate
178
log
plain
d---------
minimap2
178
log
plain
d---------
mmseqs2
180
log
plain
d---------
molden
141
log
plain
d---------
mothur
141
log
plain
d---------
mrbayes
185
log
plain
d---------
mummer
178
log
plain
d---------
muscle
141
log
plain
d---------
ncbi-blast+
178
log
plain
d---------
ncbi-cxx-toolkit
141
log
plain
d---------
ncbi-entrez-direct
178
log
plain
d---------
ncbi-toolkit
178
log
plain
d---------
ncbi-vdb
178
log
plain
d---------
ngs-sdk
178
log
plain
d---------
p5-AcePerl
178
log
plain
d---------
p5-Bio-ASN1-EntrezGene
146
log
plain
d---------
p5-Bio-Cluster
146
log
plain
d---------
p5-Bio-Coordinate
146
log
plain
d---------
p5-Bio-DB-EMBL
146
log
plain
d---------
p5-Bio-DB-NCBIHelper
146
log
plain
d---------
p5-Bio-Das-Lite
146
log
plain
d---------
p5-Bio-Das
146
log
plain
d---------
p5-Bio-FeatureIO
146
log
plain
d---------
p5-Bio-GFF3
146
log
plain
d---------
p5-Bio-Glite
146
log
plain
d---------
p5-Bio-Graphics
146
log
plain
d---------
p5-Bio-MAGETAB
146
log
plain
d---------
p5-Bio-NEXUS
146
log
plain
d---------
p5-Bio-Phylo
146
log
plain
d---------
p5-Bio-SCF
146
log
plain
d---------
p5-Bio-Variation
146
log
plain
d---------
p5-BioPerl-Run
178
log
plain
d---------
p5-BioPerl
146
log
plain
d---------
p5-TrimGalore
178
log
plain
d---------
p5-transdecoder
146
log
plain
d---------
paml
146
log
plain
d---------
pbbam
178
log
plain
d---------
pbseqan
146
log
plain
d---------
peak-classifier
146
log
plain
d---------
pear-merger
109
log
plain
d---------
phrap
178
log
plain
d---------
phred
141
log
plain
d---------
phyml
141
log
plain
d---------
picard-tools
141
log
plain
d---------
plink
178
log
plain
d---------
pooler
109
log
plain
d---------
primer3
141
log
plain
d---------
prodigal
109
log
plain
d---------
prodigy-lig
109
log
plain
d---------
protomol
178
log
plain
d---------
psi88
141
log
plain
d---------
py-Genesis-PyAPI
109
log
plain
d---------
py-PySCeS
109
log
plain
d---------
py-bcbio-gff
109
log
plain
d---------
py-biom-format
109
log
plain
d---------
py-biopython
109
log
plain
d---------
py-bx-python
109
log
plain
d---------
py-crossmap
141
log
plain
d---------
py-cutadapt
109
log
plain
d---------
py-deeptools
109
log
plain
d---------
py-deeptoolsintervals
141
log
plain
d---------
py-dna-features-viewer
109
log
plain
d---------
py-dnaio
109
log
plain
d---------
py-ete3
109
log
plain
d---------
py-gffutils
109
log
plain
d---------
py-goatools
109
log
plain
d---------
py-gtfparse
109
log
plain
d---------
py-hits
109
log
plain
d---------
py-libnuml
178
log
plain
d---------
py-libsedml
178
log
plain
d---------
py-loompy
109
log
plain
d---------
py-macs2
141
log
plain
d---------
py-mrcfile
109
log
plain
d---------
py-multiqc
141
log
plain
d---------
py-ont-fast5-api
141
log
plain
d---------
py-orange3-bioinformatics
109
log
plain
d---------
py-orange3-single-cell
141
log
plain
d---------
py-pandas-charm
109
log
plain
d---------
py-py2bit
109
log
plain
d---------
py-pybigwig
109
log
plain
d---------
py-pyfaidx
109
log
plain
d---------
py-pyrodigal
109
log
plain
d---------
py-pysam
141
log
plain
d---------
py-python-libsbml
146
log
plain
d---------
py-pywgsim
109
log
plain
d---------
py-resdk
109
log
plain
d---------
py-scikit-bio
109
log
plain
d---------
py-valerius
109
log
plain
d---------
py-xenaPython
109
log
plain
d---------
pyfasta
109
log
plain
d---------
python-nexus
141
log
plain
d---------
rainbow
141
log
plain
d---------
rampler
141
log
plain
d---------
readseq
141
log
plain
d---------
recombine
141
log
plain
d---------
rna-seq
109
log
plain
d---------
ruby-bio
146
log
plain
d---------
rubygem-bio-executables
109
log
plain
d---------
rubygem-bio-old-biofetch-emulator
109
log
plain
d---------
rubygem-bio-shell
109
log
plain
d---------
rubygem-bio
109
log
plain
d---------
sam2pairwise
141
log
plain
d---------
samtools
178
log
plain
d---------
scrm
141
log
plain
d---------
seaview
146
log
plain
d---------
seqan-apps
146
log
plain
d---------
seqan
146
log
plain
d---------
seqan1
146
log
plain
d---------
seqan3
146
log
plain
d---------
seqio
141
log
plain
d---------
seqkit
109
log
plain
d---------
seqtk
141
log
plain
d---------
sigviewer
109
log
plain
d---------
sim4
109
log
plain
d---------
slclust
141
log
plain
d---------
smithwaterman
178
log
plain
d---------
snpeff
178
log
plain
d---------
spoa
178
log
plain
d---------
sra-tools
178
log
plain
d---------
stacks
146
log
plain
d---------
star
141
log
plain
d---------
stringtie
141
log
plain
d---------
subread
178
log
plain
d---------
tRNAscan-SE
178
log
plain
d---------
tabixpp
141
log
plain
d---------
taxonkit
109
log
plain
d---------
treekin
141
log
plain
d---------
treepuzzle
109
log
plain
d---------
trimadap
141
log
plain
d---------
trimmomatic
178
log
plain
d---------
ucsc-userapps
217
log
plain
d---------
ugene
178
log
plain
d---------
unikmer
109
log
plain
d---------
vcf-split
109
log
plain
d---------
vcf2hap
109
log
plain
d---------
vcflib
178
log
plain
d---------
vcftools
146
log
plain
d---------
velvet
141
log
plain
d---------
viennarna
178
log
plain
d---------
vsearch
109
log
plain
d---------
vt
141
log
plain
d---------
wise
141
log
plain