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-rw-r--r--biology/ssaha/files/patch-SequenceReader.cpp20
1 files changed, 0 insertions, 20 deletions
diff --git a/biology/ssaha/files/patch-SequenceReader.cpp b/biology/ssaha/files/patch-SequenceReader.cpp
deleted file mode 100644
index 356c6e8363d9..000000000000
--- a/biology/ssaha/files/patch-SequenceReader.cpp
+++ /dev/null
@@ -1,20 +0,0 @@
---- ./SequenceReader/SequenceReader.cpp.orig 2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceReader.cpp 2008-06-12 15:39:31.000000000 -0300
-@@ -179,7 +179,7 @@
-
- for ( ; i != reverseBuffer_.end() ; i++, j-- )
- {
-- *i= reverseChar[ *j ];
-+ *i= reverseChar[ (int) *j ];
- // cout << "char: " << (int)*j << *j << " - " << (int)*i << *i << endl;
- }
-
-@@ -356,7 +356,7 @@
- throw SSAHAException
- ("Requested seq start exceeds requested seq end in SourceReaderIndex::extractSource");
- } // ~if
-- else if (seqEnd>lastSourceSeq_.size() )
-+ else if (seqEnd>(int)lastSourceSeq_.size() )
- {
- cout << seqEnd << " " << lastSourceSeq_.size() << endl;
- throw SSAHAException