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# Created by: Jason W. Bacon <jwbacon@tds.net>
# $FreeBSD$
############################################################################
# http://www.neuro.mcw.edu/Ports has the latest source distribution from
# which this port is built. It will be updated as time permits.
#
# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
# contain the latest source release. If this port is not up to date,
# you can download the latest sources and build manually.
PORTNAME= afni
PORTVERSION= 2012.04.17.2129
PORTREVISION= 7
CATEGORIES= science biology graphics
MASTER_SITES= http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
DISTFILES= afni_src.tgz afni.1 3dClustBust.c \
TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.5-July3107.tgz
DIST_SUBDIR= AFNI-${PORTVERSION}
EXTRACT_ONLY= afni_src.tgz CA_EZ_v1.5-July3107.tgz
MAINTAINER= jwbacon@tds.net
COMMENT= Advanced Functional Neuro Imaging
LIB_DEPENDS= R:${PORTSDIR}/math/R \
gsl:${PORTSDIR}/math/gsl
RUN_DEPENDS= cjpeg:${PORTSDIR}/graphics/jpeg \
mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
whirlgif:${PORTSDIR}/graphics/whirlgif \
ppmtogif:${PORTSDIR}/graphics/netpbm \
endian:${PORTSDIR}/sysutils/endian
USES= gettext iconv gmake motif
NO_STAGE= yes
BROKEN= R_io.so fails to build with R-3.0.2
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
BROKEN= Does not compile on sparc64: "undefined reference to '_mcount'"
.endif
USE_GL= glw glu
USE_XORG= xi
MAKE_ENV= CC="${CC}"
MAKE_JOBS_UNSAFE=yes
WRKSRC= ${WRKDIR}/afni_src
ALL_TARGET= vastness suma
###########################################################################
# Install parameters
MAN1= afni.1
SUB_FILES= pkg-message afni.cshrc afni.profile
INSTALL_WRKSRC= ${WRKSRC}/BSD
STAGE= ${WRKSRC}/stage
X11R6_FILES= coxplot/Makefile \
coxplot/Makefile.f2c \
3DEdge/src/Makefile \
SUMA/SUMA_Makefile \
edt_blur.c \
suma_datasets.c \
SUMA/SUMA_Load_Surface_Object.c \
SUMA/SUMA_MiscFunc.c \
SUMA/SUMA_ParseCommands.c \
SUMA/GLUT/libglut/glut_event.c \
SUMA/SUMA_Surface_IO.c
post-extract:
@${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}/Makefile
.for f in ${X11R6_FILES}
@${REINPLACE_CMD} -e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
.endfor
@${REINPLACE_CMD} -E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
@${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
@${CP} ${DISTDIR}/${DIST_SUBDIR}/3dClustBust.c ${WRKSRC}
@${REINPLACE_CMD} "s|%%PREFIX%%|${PREFIX}|g" ${WRKDIR}/afni.1
post-build:
${MKDIR} ${STAGE}/bin \
${STAGE}/scripts \
${STAGE}/lib \
${STAGE}/include \
${STAGE}/trash \
${STAGE}/doc \
${STAGE}/share
${MV} ${INSTALL_WRKSRC}/libf2c.a \
${STAGE}/trash
${MV} ${INSTALL_WRKSRC}/*.a \
${INSTALL_WRKSRC}/*.so \
${STAGE}/lib
${MV} ${INSTALL_WRKSRC}/funstuff \
${INSTALL_WRKSRC}/AFNI.*rc \
${INSTALL_WRKSRC}/afnigui* \
${STAGE}/share
${MV} ${INSTALL_WRKSRC}/*.h \
${STAGE}/include
${MV} ${INSTALL_WRKSRC}/README* \
${STAGE}/doc
${MV} ${INSTALL_WRKSRC}/abut ${INSTALL_WRKSRC}/afni_abut
${MV} ${INSTALL_WRKSRC}/qhull ${INSTALL_WRKSRC}/afni_qhull
for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
${MV} $${binary} ${STAGE}/bin ; \
done
${MV} ${INSTALL_WRKSRC}/* \
${STAGE}/scripts
do-install:
${MKDIR} ${DATADIR} ${PREFIX}/lib/afni ${PREFIX}/include/afni
${INSTALL_DATA} ${STAGE}/lib/* ${PREFIX}/lib/afni
${INSTALL_DATA} ${STAGE}/include/* ${PREFIX}/include/afni
${CP} -R ${STAGE}/share/* ${DATADIR}
${INSTALL_PROGRAM} ${STAGE}/bin/* ${PREFIX}/bin
${INSTALL_SCRIPT} ${STAGE}/scripts/* ${PREFIX}/bin
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.5-July3107/* ${DATADIR}
${INSTALL_MAN} ${WRKDIR}/afni.1 ${MAN1PREFIX}/man/man1
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR} ${PREFIX}/etc/mri
${INSTALL_DATA} ${STAGE}/doc/* ${DOCSDIR}
${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
${PREFIX}/etc/mri
.endif
post-install:
@${CAT} ${WRKDIR}/pkg-message
.include <bsd.port.post.mk>
|
