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# $FreeBSD$
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
DISTVERSION= 19.1.14
CATEGORIES= science biology graphics perl5 python
MAINTAINER= jwb@FreeBSD.org
COMMENT= Advanced Functional Neuro Imaging
LICENSE= GPLv2
BROKEN_sparc64= Does not compile: "undefined reference to '_mcount'"
BUILD_DEPENDS= gm4:devel/m4 \
R:math/R
LIB_DEPENDS= libexpat.so:textproc/expat2 \
libf2c.so:lang/f2c \
libgsl.so:math/gsl \
libnetcdff.so:science/netcdf-fortran \
libxml2.so:textproc/libxml2 \
libXm.so:x11-toolkits/open-motif \
libnetpbm.so:graphics/netpbm
RUN_DEPENDS= endian:sysutils/endian \
mpeg_encode:multimedia/mpeg_encode \
qhull:math/qhull5 \
R:math/R
USES= compiler:openmp gettext gl gmake gnome iconv jpeg:run motif \
perl5 python shebangfix tar:xz
USE_GNOME= glib20
USE_GITHUB= yes
SHEBANG_FILES= scripts_install/* \
python_scripts/afni_python/*.py \
jzosky/*.py \
jzosky/lib_RetroTS/*.py \
discoraj/ClusterExplorer/*.py \
roopchansinghv/PsychoPy-NeuroFeedback-Demo/*.py \
roopchansinghv/PsychoPy-NeuroFeedback-Demo/*/*.py \
pkundu/*.py \
pkundu/meica.libs/*.py \
pkundu/meica.libs/*/*.py \
pkundu/meica.libs/*/*/*.py
USE_GL= gl glu
USE_XORG= x11 xext xi xmu xp xt
MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
MAKE_JOBS_UNSAFE=yes
WRKSRC_SUBDIR= src
ALL_TARGET= vastness suma
###########################################################################
# Install parameters
SUB_FILES= pkg-message afni.cshrc afni.profile
INSTALL_WRKSRC= ${WRKSRC}/BSD
INSTALL_TMP= ${INSTALL_WRKSRC}-temp
PRESTAGE= ${WRKSRC}/prestage
OPTIONS_DEFINE= DOCS
.include <bsd.port.options.mk>
CONFLICTS= im-[0-9]* \
nifticlib-[0-9]* \
open-usp-tukubai-[0-9]*
X11R6_FILES= coxplot/Makefile \
coxplot/Makefile.f2c \
3DEdge/src/Makefile \
SUMA/SUMA_Makefile \
edt_blur.c \
suma_datasets.c \
SUMA/SUMA_Load_Surface_Object.c \
SUMA/SUMA_MiscFunc.c \
SUMA/SUMA_ParseCommands.c \
SUMA/GLUT/libglut/glut_event.c \
SUMA/SUMA_Surface_IO.c
post-extract:
.for f in ${X11R6_FILES}
@${REINPLACE_CMD} \
-e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
.endfor
@${REINPLACE_CMD} \
-E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
@${CP} ${FILESDIR}/Makefile ${WRKSRC}
@${RM} ${WRKSRC}/3DEdge/src/Makefile.orig
# shebangfix misses /bin/python on 10.1
# @${REINPLACE_CMD} -e "s|/bin/python|${PYTHON_CMD}|g" \
# ${WRKSRC}/python_scripts/afni_python/lib_fat_Rfactor.py
pre-configure:
@${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \
${WRKSRC}/SUMA/SUMA_Makefile
@${REINPLACE_CMD} \
-e 's|os\.path\.dirname(sys\.argv\[0\])|"${DATADIR}"|g' \
${WRKSRC}/pkundu/meica.py
@${REINPLACE_CMD} \
-e 's|g_info|afni_g_info|g' \
${WRKSRC}/rickr/Dimon.c \
${WRKSRC}/rickr/Dimon1.c \
${WRKSRC}/afni_history_rickr.c \
${WRKSRC}/mri_dicom_stuff.c \
${WRKSRC}/mri_process_siemens.c \
${WRKSRC}/mri_read_dicom.c \
${WRKSRC}/to3d.c \
${WRKSRC}/mri_dicom_stuff.h
do-install:
# AFNI install just dumps everything into one flat directory
# Preserve original install dir and make a sacrificial temp copy
# to be pruned and rearranged for easy staging
@${RM} -r ${INSTALL_TMP}
@${CP} -R ${INSTALL_WRKSRC} ${INSTALL_TMP}
# Clean up and organize files into ${PRESTAGE}, destroying
# temp copy in the process
@${RM} -rf ${PRESTAGE}
@${MKDIR} ${PRESTAGE}/bin \
${PRESTAGE}/scripts \
${PRESTAGE}/lib \
${PRESTAGE}/include \
${PRESTAGE}/trash \
${PRESTAGE}/doc \
${PRESTAGE}/share
@${RM} ${INSTALL_TMP}/libf2c.a
@${MV} ${INSTALL_TMP}/meica.libs \
${INSTALL_TMP}/shiny \
${INSTALL_TMP}/lib_RetroTS \
${INSTALL_TMP}/afniInterfaceRT \
${INSTALL_TMP}/funstuff \
${INSTALL_TMP}/AFNI.*rc \
${INSTALL_TMP}/afnigui* \
${PRESTAGE}/share
@${MV} ${INSTALL_TMP}/*.a \
${INSTALL_TMP}/*.so \
${PRESTAGE}/lib
@${MV} ${INSTALL_TMP}/*.h ${PRESTAGE}/include
@${CP} ${WRKDIR}/afni-AFNI_${PORTVERSION}/doc/README/* ${PRESTAGE}/doc
@for binary in `${FILE} ${INSTALL_TMP}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
${MV} $${binary} ${PRESTAGE}/bin ; \
done
@${MV} ${INSTALL_TMP}/* ${PRESTAGE}/scripts
# Install to STAGEDIR using proper ports tools
@${MKDIR} \
${STAGEDIR}${DATADIR} \
${STAGEDIR}${PREFIX}/lib/afni \
${STAGEDIR}${PREFIX}/include/afni \
${STAGEDIR}${DOCSDIR} \
${STAGEDIR}${PREFIX}/etc/mri
${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
(cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR})
${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
${STAGEDIR}${PREFIX}/etc/mri
do-install-DOCS-on:
${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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