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--- Makefile.orig Sat Oct 7 00:16:41 2000
+++ Makefile Thu Dec 20 17:26:37 2001
@@ -19,10 +19,11 @@
## (this could be 'perl5' or otherwise on some systems)
PERLBIN = perl
+prefix = ${PREFIX}
## where you want things installed
-BINDIR = $(HOME)/bin
-LIBDIR = $(HOME)/lib/tRNAscan-SE
-MANDIR = $(HOME)/man
+BINDIR = $(prefix)/bin
+LIBDIR = $(prefix)/share/tRNAscan-SE
+MANDIR = $(prefix)/man
## NOTE !! If you later manually move the location of
## binaries or data files in the BINDIR or LIBDIR directories,
@@ -106,7 +107,7 @@
MPOBJ = mpviterbi.o mp-dbviterbi.o
-all: $(PROGS) tRNAscanSE setpaths
+all: $(PROGS) tRNAscanSE
covels-SE: $(OBJ) scan_main.o
$(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
@@ -178,7 +179,7 @@
@echo ""
@rm -f testrun.out
@echo "tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa"
- @if tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
+ @if ./tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \
then echo ""; \
else echo "tRNAscan-SE did NOT complete properly."; fi
@if diff testrun.out testrun.ref; \
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