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- patch includes removal of '-arch i386' trying to fix build on i386:
- see https://github.com/ncbi/ngs/issues/39
--- ngs-sdk/setup/konfigure.perl.orig 2022-11-15 17:37:36 UTC
+++ ngs-sdk/setup/konfigure.perl
@@ -225,7 +225,7 @@ println $MARCH unless ($AUTORUN);
print "checking machine architecture... " unless ($AUTORUN);
println $MARCH unless ($AUTORUN);
-unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i || $MARCH =~ /aarch64/) {
+unless ($MARCH =~ /x86_64/i || $MARCH =~ /amd64/i || $MARCH =~ /i?86/i || $MARCH =~ /aarch64/) {
println "configure: error: unsupported architecture '$OSTYPE':'$MARCH'";
exit 1;
}
@@ -312,6 +312,8 @@ if ($MARCH =~ /x86_64/i) {
if ($MARCH =~ /x86_64/i) {
$BITS = 64;
+} elsif ($MARCH =~ /amd64/i) {
+ $BITS = 64;
} elsif ($MARCH eq 'fat86') {
$BITS = '32_64';
} elsif ($MARCH =~ /i?86/i) {
@@ -337,6 +339,16 @@ if ($OSTYPE =~ /linux/i) {
$OSINC = 'unix';
$TOOLS = 'gcc' unless ($TOOLS);
$PYTHON = 'python';
+} elsif ($OSTYPE =~ /freebsd/i) {
+ $LPFX = 'lib';
+ $OBJX = 'o';
+ $LOBX = 'pic.o';
+ $LIBX = 'a';
+ $SHLX = 'so';
+ $EXEX = '';
+ $OSINC = 'unix';
+ $TOOLS = 'clang' unless ($TOOLS);
+ $PYTHON = $ENV{FREEBSD_PYTHON_CMD};
} elsif ($OSTYPE =~ /darwin/i) {
$LPFX = 'lib';
$OBJX = 'o';
@@ -386,14 +398,14 @@ if ($TOOLS =~ /gcc$/) {
my $versionMin = '-mmacosx-version-min=10.10';
$CP = "$CPP -c $versionMin";
if ($BITS ne '32_64') {
- $ARCH_FL = '-arch i386' if ($BITS == 32);
+ $ARCH_FL = '' if ($BITS == 32);
$OPT = '-O3';
$AR = 'ar rc';
$LD = "clang $ARCH_FL";
$LP = "$CPP $versionMin $ARCH_FL";
} else {
$MAKE_MANIFEST = '( echo "$^" > $@/manifest )';
- $ARCH_FL = '-arch i386 -arch x86_64';
+ $ARCH_FL = '-arch x86_64';
$OPT = '-O3';
$AR = 'libtool -static -o';
$LD = "clang -Wl,-arch_multiple $ARCH_FL -Wl,-all_load";
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