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PORTNAME= mothur
DISTVERSIONPREFIX= v
DISTVERSION= 1.48.0
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
COMMENT= Software for bioinformatics of the microbial ecology community
WWW= https://www.mothur.org/
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE.md
BUILD_DEPENDS= bash:shells/bash
USES= compiler:c++11-lang gmake localbase readline
USE_GITHUB= yes
#USE_CXXSTD= c++11 # not all C++ files are compiled with -std=c++11 which causes failure in addtargets2.cpp due to a collision of the 'byte' symbol with std::byte
MAKE_ARGS= INSTALL_DIR=${STAGEDIR}${PREFIX}/bin
ALL_TARGET= ${PORTNAME}
BINARY_ALIAS= g++=${CXX}
PLIST_FILES= bin/${PORTNAME}
.include <bsd.port.options.mk>
.if ${OPSYS} == FreeBSD && ( ${OSVERSION} >= 1400091 || ( ${OSVERSION} >= 1302505 && ${OSVERSION} < 1400000 ))
USES+= llvm:max=15
.endif
post-install:
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
.include <bsd.port.mk>
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