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# Created by: Bob Zimmermann <rpz@cse.wustl.edu>
# $FreeBSD$
PORTNAME= gmap
PORTVERSION= 2015.09.21
CATEGORIES= biology
MASTER_SITES= http://research-pub.gene.com/gmap/src/
DISTNAME= ${PORTNAME}-gsnap-${PORTVERSION:C|\.|-|g}
MAINTAINER= bacon4000@gmail.com
COMMENT= Genomic Mapping and Alignment Program for mRNA and EST Sequences
LICENSE= GMAP
LICENSE_NAME= GMAP License
LICENSE_FILE= ${WRKSRC}/COPYING
LICENSE_PERMS= dist-mirror pkg-mirror auto-accept
BROKEN_aarch64= invokes x86 assembler
BROKEN_armv6= invokes x86 assembler
BROKEN_armv7= invokes x86 assembler
BROKEN_mips64= invokes x86 assembler
BROKEN_powerpc64= invokes x86 assembler
BROKEN_sparc64= invokes x86 assembler
USES= gmake perl5
GNU_CONFIGURE= yes
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION:C|\.|-|g}
OPTIONS_DEFINE= SIMD
SIMD_CONFIGURE_OFF= --disable-builtin-popcount --disable-simd
# shebang_fix operates during patch.
# These scripts are created during configure.
post-configure:
${REINPLACE_CMD} -e 's|/usr/bin/perl|${PERL}|g' \
${WRKSRC}/Makefile ${WRKSRC}/util/*.pl
.include <bsd.port.mk>
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