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Age
Files
Lines
*
Fix Qt5 symbol version scripts to put the catch-all clause first. When
Tijl Coosemans
2019-01-16
3
-2
/
+3
*
biology/stacks: Upgrade to 2.3
Jason W. Bacon
2019-01-12
4
-38
/
+14
*
New port: biology/hisat2: Program for mapping next-generation sequencing reads
Jason W. Bacon
2019-01-11
7
-0
/
+577
*
Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.
Mathieu Arnold
2019-01-11
1
-1
/
+2
*
biology/seqtools: fix build on current, if lld is lld7
Kurt Jaeger
2019-01-07
1
-0
/
+1
*
biology/groopm fails to build with python3
Antoine Brodin
2019-01-07
1
-1
/
+1
*
Update dns/libidn2 to 2.1.0
Sunpoet Po-Chuan Hsieh
2019-01-06
2
-0
/
+2
*
Update science/hdf5 to 1.10.4
Sunpoet Po-Chuan Hsieh
2019-01-05
1
-1
/
+1
*
biology/ncbi-blast+: Upgrade to 2.8.1
Jason W. Bacon
2019-01-01
4
-32
/
+244
*
biology/diamond: Update to version 0.9.24
Joseph Mingrone
2018-12-31
4
-27
/
+12
*
biology/iqtree: switch to outsource cmake build
Joseph Mingrone
2018-12-27
1
-2
/
+2
*
Update math/eigen3 to 3.3.7
Tobias C. Berner
2018-12-26
1
-0
/
+1
*
Change cmake default behaviour to outsource.
Tobias C. Berner
2018-12-25
8
-8
/
+8
*
biology/iqtree: Update to version 1.6.9
Joseph Mingrone
2018-12-23
2
-5
/
+4
*
- Update to 1.73
Wen Heping
2018-12-22
2
-5
/
+4
*
Remove expired ports:
Rene Ladan
2018-12-21
4
-57
/
+0
*
biology/gff2ps: update 0.98d to 0.98l
VinÃcius Zavam
2018-12-19
2
-5
/
+5
*
biology/diamond: Update to 0.9.23 plus fixes after release
Joseph Mingrone
2018-12-17
3
-10
/
+11
*
Update Qt5 to 5.12.0
Tobias C. Berner
2018-12-16
1
-0
/
+11
*
New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE
Yuri Victorovich
2018-12-15
5
-0
/
+47
*
Bump PORTREVISION for ports depending on the canonical version of GCC
Gerald Pfeifer
2018-12-12
37
-20
/
+37
*
devel/boost-*: update to 1.69.0
Jan Beich
2018-12-12
5
-3
/
+5
*
Remove biology/njplot
Joseph Mingrone
2018-12-11
5
-111
/
+0
*
biology/mummer: Add USES=compiler:c++11-lang
Yuri Victorovich
2018-12-11
1
-1
/
+1
*
biology/mummer: Update 3.23 -> 4.0.0beta2-2
Yuri Victorovich
2018-12-11
3
-47
/
+61
*
biology/mummer: Take maintainership
Yuri Victorovich
2018-12-11
1
-1
/
+1
*
New port: math/checkm: Quality assessment tool for the microbial genomes
Yuri Victorovich
2018-12-07
4
-0
/
+43
*
New port: math/groopm: Metagenomic binning suite
Yuri Victorovich
2018-12-07
4
-0
/
+35
*
devel/gradle: Update to 5.0
Yuri Victorovich
2018-12-04
2
-4
/
+4
*
biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...
Yuri Victorovich
2018-12-03
1
-2
/
+2
*
biology/gatk: Correct the target
Yuri Victorovich
2018-12-03
1
-1
/
+1
*
New port: biology/gatk: Variant discovery in high-throughput sequencing data
Yuri Victorovich
2018-12-03
6
-0
/
+118
*
Mark QT4 ports/functionality for removal on 2019-03-15
Rene Ladan
2018-12-02
1
-0
/
+3
*
biology/igv: Update 2.4.15 -> 2.4.16
Yuri Victorovich
2018-11-18
2
-6
/
+6
*
biology/molden: update to 5.8.2
Johannes M Dieterich
2018-11-13
3
-10
/
+45
*
biology/seqan-apps: fix build with GCC-based architectures
Steve Wills
2018-11-09
1
-2
/
+4
*
biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gcc
Yuri Victorovich
2018-11-07
1
-1
/
+2
*
Fix build failure with base GCC because of double typedefs.
Mark Linimon
2018-11-05
1
-0
/
+48
*
Remove the incorrect typedefs to fix build on tier-2.
Mark Linimon
2018-11-05
2
-0
/
+29
*
Remove the inccorrect typedefs to fix build on tier-2.
Mark Linimon
2018-11-05
1
-4
/
+0
*
biology/igv: Update 2.4.10 -> 2.4.15
Yuri Victorovich
2018-11-04
3
-24
/
+21
*
biology/canu: Upgrade to 1.8, add experimental SLURM integration
Jason W. Bacon
2018-11-04
5
-31
/
+102
*
biology/bowtie: Patch for gcc8 and clean up
Jason W. Bacon
2018-11-03
2
-6
/
+17
*
biology/bowtie: Revert previous commit with missing log message
Jason W. Bacon
2018-11-03
2
-17
/
+5
*
biology/bowtie: Patch
Jason W. Bacon
2018-11-03
2
-5
/
+17
*
biology/py-loompy: Update 2.0.15 -> 2.0.16
Yuri Victorovich
2018-10-30
2
-4
/
+4
*
biology/iqtree: Update to version 1.6.8
Joseph Mingrone
2018-10-28
2
-4
/
+4
*
Fix build with tier-2 arches.
Mark Linimon
2018-10-28
1
-1
/
+7
*
biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2
Yuri Victorovich
2018-10-28
2
-4
/
+4
*
biology/p5-transdecoder: Upgrade to 5.4.0
Jason W. Bacon
2018-10-23
4
-30
/
+44
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