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Author
Age
Files
Lines
*
Update a few GNUstep ports:
Neel Chauhan
2021-02-14
1
-1
/
+1
*
biology/py-multiqc: Update to 1.9
Jason W. Bacon
2021-02-05
2
-6
/
+7
*
biology/fastqc: Update to 0.11.9
Jason W. Bacon
2021-02-04
2
-4
/
+4
*
biology/bioparser: Update 3.0.12 -> 3.0.12-2
Yuri Victorovich
2021-02-03
3
-17
/
+17
*
biology/py-cutadapt: Update to 3.2
Jason W. Bacon
2021-02-02
4
-12
/
+12
*
biology/bowtie2: Reverse switch to devel/onetbb
Jason W. Bacon
2021-01-30
1
-2
/
+2
*
biology/bowtie2: Switch to devel/onetbb
Jason W. Bacon
2021-01-30
1
-1
/
+2
*
biology/vsearch: Update to 2.15.2
Jason W. Bacon
2021-01-30
3
-10
/
+11
*
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
Sunpoet Po-Chuan Hsieh
2021-01-30
5
-5
/
+5
*
biology/hyphy: Update to version 2.5.27
Joseph Mingrone
2021-01-27
2
-4
/
+4
*
biology/kallisto: Add -lz for pending hdf5 upgrade
Jason W. Bacon
2021-01-26
1
-1
/
+2
*
biology/bedtools: Upgrade to 2.30.0
Jason W. Bacon
2021-01-24
6
-34
/
+46
*
biology/haplohseq: Fix example scripts for python 3
Jason W. Bacon
2021-01-23
6
-43
/
+81
*
biology/bedtools: License changed upstream
Jason W. Bacon
2021-01-22
1
-1
/
+1
*
biology/gatk: Add the WITH_LARGE_FILES option.
Yuri Victorovich
2021-01-22
1
-0
/
+30
*
biology/gatk: Update 4.1.8.1 -> 4.1.9.0
Yuri Victorovich
2021-01-21
2
-6
/
+6
*
Fix build on GCC-based systems by adding compiler:c++14-lang to USES:
Mark Linimon
2021-01-20
1
-1
/
+1
*
Add compiler:c++11-lang to USES to fix build on GCC-based systems:
Mark Linimon
2021-01-20
1
-1
/
+1
*
biology/bioparser: Cosmetic changes
Yuri Victorovich
2021-01-19
1
-9
/
+9
*
New port: biology/rampler: Standalone module for sampling genomic sequences
Yuri Victorovich
2021-01-19
5
-0
/
+66
*
New port: biology/edlib: Fast C++ library for sequence alignment using edit d...
Yuri Victorovich
2021-01-19
5
-0
/
+40
*
New port: biology/spoa: C++ implementation of the partial order alignment (PO...
Yuri Victorovich
2021-01-19
6
-0
/
+166
*
New port: biology/biosoup: Collection of C++ header-only data structures for ...
Yuri Victorovich
2021-01-19
4
-0
/
+46
*
New port: biology/bioparser: C++ header only parsing library for several form...
Yuri Victorovich
2021-01-19
4
-0
/
+49
*
Mark BROKEN on riscv64 the same as on aarch64.
Mark Linimon
2021-01-19
1
-2
/
+3
*
Mark BROKEN on riscv64 the same as armv*:
Mark Linimon
2021-01-19
1
-0
/
+1
*
biology/vsearch: enable on powerpc64le
Piotr Kubaj
2021-01-16
1
-1
/
+1
*
biology/hyphy: Update to version 2.5.26
Joseph Mingrone
2021-01-15
2
-5
/
+4
*
biology/haplohseq: Restrict to python3
Jason W. Bacon
2021-01-15
2
-2
/
+1
*
Hook haplohseq to the build
Antoine Brodin
2021-01-14
1
-0
/
+1
*
biology/haplohseq: Resurrect and fix python2 dependency
Jason W. Bacon
2021-01-14
13
-0
/
+308
*
Remove PY_SPHINX from ports using Python 3
Danilo G. Baio
2021-01-14
1
-1
/
+1
*
biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ build
Joseph Mingrone
2021-01-12
2
-2
/
+14
*
biology/hyphy: Remove USES=compiler:openmp
Joseph Mingrone
2021-01-11
1
-1
/
+2
*
biology/star: Drop dependency on gcc
Jason W. Bacon
2021-01-11
2
-15
/
+15
*
biology/stacks: Drop dependency on gcc
Jason W. Bacon
2021-01-11
1
-4
/
+4
*
biology/ncbi-blast+: Drop dependency on gcc
Jason W. Bacon
2021-01-11
2
-4
/
+26
*
biology/gcta: Drop dependency on gcc
Jason W. Bacon
2021-01-11
1
-10
/
+4
*
biology/fasttree: Drop dependency on gcc
Jason W. Bacon
2021-01-11
1
-3
/
+1
*
biology/cd-hit: Drop dependency on gcc
Jason W. Bacon
2021-01-11
1
-2
/
+2
*
biology/canu: Drop dependency on gcc
Jason W. Bacon
2021-01-11
1
-9
/
+3
*
biology/py-biom-format: Update to version 2.1.10
Joseph Mingrone
2021-01-11
2
-5
/
+4
*
biology/hyphy: Update to version 2.5.25
Joseph Mingrone
2021-01-11
2
-4
/
+4
*
biology/pooler: Upgrade to 1.76
Jason W. Bacon
2021-01-08
2
-4
/
+4
*
biology/gemma: Upgrade to 0.98.3
Jason W. Bacon
2021-01-02
3
-20
/
+4
*
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
Mark Linimon
2021-01-02
6
-0
/
+6
*
- Update Unipro UGENE port to version 37.0
Alexey Dokuchaev
2020-12-31
13
-248
/
+56
*
Drop python 2.7 support from a few ports
Antoine Brodin
2020-12-28
9
-9
/
+9
*
Restrict to Java 8, since this doesn't compile with Java 11
Greg Lewis
2020-12-26
1
-0
/
+1
*
scipy 1.5.4 is only compatible with python 3.6+
Antoine Brodin
2020-12-24
2
-2
/
+2
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