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Author
Age
Files
Lines
*
biology/seaview: Update version 5.0.3=>5.0.4
Muhammad Moinur Rahman
2020-06-22
2
-4
/
+4
*
biology/vsearch: Update to 2.15.0
Jason W. Bacon
2020-06-20
2
-4
/
+4
*
Move devel/swig30 to devel/swig and update to 4.0.1
Sunpoet Po-Chuan Hsieh
2020-06-17
1
-4
/
+2
*
biology/py-loompy: Update 2.0.17 -> 3.0.6
Yuri Victorovich
2020-06-16
2
-5
/
+4
*
biology/py-gffutils: Update 0.10 -> 0.10.1
Yuri Victorovich
2020-06-16
2
-4
/
+4
*
biology/seaview: Update version 5.0.2=>5.0.3
Muhammad Moinur Rahman
2020-06-14
2
-4
/
+4
*
Unbreak bulk -a
Antoine Brodin
2020-06-13
1
-1
/
+1
*
biology/picard-tools: CLI tools for manipulating sequencing data
Jason W. Bacon
2020-06-13
6
-0
/
+170
*
biology/py-biopython: Set python requirement to 3.6+
Jason W. Bacon
2020-06-13
1
-1
/
+1
*
biology/diamond: Update to version 0.9.34
Joseph Mingrone
2020-06-12
2
-4
/
+4
*
biology/py-pysam: Update 0.15.4 -> 0.16.0
Yuri Victorovich
2020-06-09
2
-4
/
+4
*
Add compiler:c++0x to USES to fix build on GCC-based systems:
Mark Linimon
2020-06-05
1
-1
/
+1
*
biology/bioawk: BWK awk modified for biological data
Jason W. Bacon
2020-06-05
5
-0
/
+79
*
biology/subread: Read alignment, quantification and mutation discovery
Jason W. Bacon
2020-06-05
18
-0
/
+367
*
bioloty/vt: Discovers short variants from Next Generation Sequencing data
Jason W. Bacon
2020-06-04
9
-0
/
+147
*
biology/diamond: Update to version 0.9.33
Joseph Mingrone
2020-06-03
2
-4
/
+4
*
biology/hyphy: Update to version 2.5.14
Joseph Mingrone
2020-05-30
3
-438
/
+438
*
biology/iqtree: Update to version 2.0.6
Joseph Mingrone
2020-05-30
2
-4
/
+4
*
biology/abyss: Update 2.2.3 -> 2.2.4
Yuri Victorovich
2020-05-30
2
-5
/
+4
*
Clean up some things
Tobias Kortkamp
2020-05-30
1
-1
/
+2
*
biology/py-biopython: Upgrade to 1.77
Jason W. Bacon
2020-05-29
2
-9
/
+11
*
biology/gatk: Update 4.1.5.0 -> 4.1.7.0
Yuri Victorovich
2020-05-28
2
-6
/
+6
*
biology/iqtree: Update to version 2.0.5
Joseph Mingrone
2020-05-28
2
-7
/
+7
*
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 1).
Alexey Dokuchaev
2020-05-27
1
-1
/
+1
*
Mark as BROKEN on powerpc64 12. It builds on -head.
Mark Linimon
2020-05-26
1
-1
/
+2
*
biology/py-dnaio: Upgrade to 0.4.2
Jason W. Bacon
2020-05-24
2
-4
/
+4
*
biology/ugene: prepare for Qt5-5.15
Tobias C. Berner
2020-05-19
4
-0
/
+40
*
Mark as BROKEN on powerpc64:
Mark Linimon
2020-05-17
1
-0
/
+2
*
Bump PORTREVISION for security/nettle shlib change
Sunpoet Po-Chuan Hsieh
2020-05-16
2
-1
/
+2
*
New port: biology/py-hits: Utilities for processing high-throughput sequencin...
Yuri Victorovich
2020-05-16
4
-0
/
+27
*
biology/py-scikit-bio: Fix license
Yuri Victorovich
2020-05-16
1
-1
/
+1
*
biology/py-scikit-bio: Remove bogus lines
Yuri Victorovich
2020-05-16
1
-5
/
+0
*
New port: biology/py-scikit-bio: Data structures, algorithms, educational res...
Yuri Victorovich
2020-05-16
4
-0
/
+44
*
New port: biology/py-pandas-charm: Library for getting character matrices int...
Yuri Victorovich
2020-05-16
4
-0
/
+31
*
New port: biology/py-ete3: Framework for the analysis and visualization of trees
Yuri Victorovich
2020-05-16
4
-0
/
+43
*
Add compiler:c++11-lang to USES to fix build on GCC-based systems:
Mark Linimon
2020-05-15
1
-1
/
+1
*
New port: biology/scrm: Coalescent simulator for biological sequences
Yuri Victorovich
2020-05-15
5
-0
/
+45
*
Update Sphinx
Danilo G. Baio
2020-05-11
1
-1
/
+1
*
biology/hhsuite: fix build on powerpc64 elfv2
Piotr Kubaj
2020-05-11
1
-1
/
+4
*
- Resurrect and unbreak by updating to version 34.0
Alexey Dokuchaev
2020-05-10
12
-0
/
+1774
*
Update devel/gmake to 4.3.
Tijl Coosemans
2020-05-09
1
-0
/
+22
*
Update to 7.6.13
Mateusz Piotrowski
2020-05-09
2
-4
/
+4
*
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas bec...
Yuri Victorovich
2020-05-06
2
-1
/
+2
*
Bump 46 ports depending on math/openblas because the after the recent math/op...
Yuri Victorovich
2020-05-06
2
-1
/
+2
*
Preserve Gradle 6.2.2 for biology/gatk
Tobias Kortkamp
2020-05-06
1
-2
/
+2
*
Remove expired ports:
Rene Ladan
2020-05-05
35
-2475
/
+0
*
biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparser
Rene Ladan
2020-05-05
1
-3
/
+1
*
biology/plink: Whole genome association analysis toolset
Jason W. Bacon
2020-05-04
6
-0
/
+94
*
- update libgd to 2.3.0
Dirk Meyer
2020-05-04
2
-1
/
+2
*
biology/hyphy: Update to version 2.5.12
Joseph Mingrone
2020-05-03
3
-5
/
+5
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