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Author
Age
Files
Lines
*
biology/vcf2hap: Generate .hap file from VCF for haplohseq
Jason W. Bacon
2021-03-23
4
-0
/
+35
*
biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file
Jason W. Bacon
2021-03-23
4
-0
/
+36
*
- Update Unipro UGENE to version 38.0
Alexey Dokuchaev
2021-03-23
5
-28
/
+8
*
Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,
Alexey Dokuchaev
2021-03-22
1
-1
/
+1
*
biology/vcf-split: Split a multi-sample VCF into single-sample VCFs
Jason W. Bacon
2021-03-21
4
-0
/
+35
*
biology/biolibc: Low-level high-performance bioinformatics library
Jason W. Bacon
2021-03-21
5
-0
/
+33
*
biology/htslib: Update to 1.12
Jason W. Bacon
2021-03-20
17
-148
/
+32
*
biology/generand: Update to 0.1.2
Jason W. Bacon
2021-03-20
2
-4
/
+4
*
biology/py-multiqc: Update to 1.10
Jason W. Bacon
2021-03-20
2
-4
/
+5
*
biology/ngs-sdk: Update 2.10.9 -> 2.11.0
Yuri Victorovich
2021-03-20
3
-5
/
+6
*
PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1
Loïc Bartoletti
2021-03-16
1
-1
/
+1
*
biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
Jason W. Bacon
2021-03-15
4
-0
/
+27
*
biology/abyss: Add PORTSCOUT line
Yuri Victorovich
2021-03-14
1
-0
/
+2
*
Move: biology/py-fastTSNE -> math/py-openTSNE
Yuri Victorovich
2021-03-13
5
-49
/
+0
*
biology/gatk: Fix fetch
Yuri Victorovich
2021-03-13
1
-5
/
+5
*
biology/gatk: Update 4.1.9.0 -> 4.2.0.0
Yuri Victorovich
2021-03-12
2
-7
/
+6
*
biology/diamond: Update to 2.0.8
Joseph Mingrone
2021-03-11
2
-4
/
+4
*
biology/hmmer: disable on powerpc64le and powerpcspe
Piotr Kubaj
2021-03-10
1
-1
/
+1
*
biology/py-scikit-bio: fix build on powerpc64
Piotr Kubaj
2021-03-09
1
-1
/
+1
*
biology/py-scikit-bio: fix build on powerpc64le
Piotr Kubaj
2021-03-09
1
-2
/
+5
*
PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0
Loïc Bartoletti
2021-03-08
1
-1
/
+1
*
Unbreak INDEX
Antoine Brodin
2021-03-06
1
-1
/
+1
*
py-cutadapt: Update to 3.3
Jason W. Bacon
2021-03-06
2
-5
/
+5
*
biology/libbigwig: Update 0.4.4 -> 0.4.6
Yuri Victorovich
2021-03-06
3
-7
/
+17
*
biology/spoa: fix build on non-x86
Piotr Kubaj
2021-03-04
1
-1
/
+7
*
biology/bwa: fix build on powerpc64le
Piotr Kubaj
2021-03-02
1
-2
/
+5
*
biology/py-bx-python: Update 0.8.9 -> 0.8.10
Yuri Victorovich
2021-02-27
2
-9
/
+6
*
biology/hyphy: Update to 2.5.29
Joseph Mingrone
2021-02-25
2
-4
/
+4
*
biology/hyphy: Update to 2.5.28
Joseph Mingrone
2021-02-23
3
-4
/
+5
*
Introduce devel/onetbb and mark devel/tbb as legacy
Ganael LAPLANCHE
2021-02-19
1
-2
/
+2
*
biology/spoa: Fix build after recent devel/cereal update; Fix LIB_DEPENDS
Yuri Victorovich
2021-02-19
2
-4
/
+16
*
Mark BROKEN in 13/14 (via latest llvm update).
Mark Linimon
2021-02-17
1
-0
/
+3
*
biology/diamond: Update to 2.0.7
Joseph Mingrone
2021-02-17
2
-4
/
+4
*
Update a few GNUstep ports:
Neel Chauhan
2021-02-14
1
-1
/
+1
*
biology/py-multiqc: Update to 1.9
Jason W. Bacon
2021-02-05
2
-6
/
+7
*
biology/fastqc: Update to 0.11.9
Jason W. Bacon
2021-02-04
2
-4
/
+4
*
biology/bioparser: Update 3.0.12 -> 3.0.12-2
Yuri Victorovich
2021-02-03
3
-17
/
+17
*
biology/py-cutadapt: Update to 3.2
Jason W. Bacon
2021-02-02
4
-12
/
+12
*
biology/bowtie2: Reverse switch to devel/onetbb
Jason W. Bacon
2021-01-30
1
-2
/
+2
*
biology/bowtie2: Switch to devel/onetbb
Jason W. Bacon
2021-01-30
1
-1
/
+2
*
biology/vsearch: Update to 2.15.2
Jason W. Bacon
2021-01-30
3
-10
/
+11
*
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
Sunpoet Po-Chuan Hsieh
2021-01-30
5
-5
/
+5
*
biology/hyphy: Update to version 2.5.27
Joseph Mingrone
2021-01-27
2
-4
/
+4
*
biology/kallisto: Add -lz for pending hdf5 upgrade
Jason W. Bacon
2021-01-26
1
-1
/
+2
*
biology/bedtools: Upgrade to 2.30.0
Jason W. Bacon
2021-01-24
6
-34
/
+46
*
biology/haplohseq: Fix example scripts for python 3
Jason W. Bacon
2021-01-23
6
-43
/
+81
*
biology/bedtools: License changed upstream
Jason W. Bacon
2021-01-22
1
-1
/
+1
*
biology/gatk: Add the WITH_LARGE_FILES option.
Yuri Victorovich
2021-01-22
1
-0
/
+30
*
biology/gatk: Update 4.1.8.1 -> 4.1.9.0
Yuri Victorovich
2021-01-21
2
-6
/
+6
*
Fix build on GCC-based systems by adding compiler:c++14-lang to USES:
Mark Linimon
2021-01-20
1
-1
/
+1
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