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* biology/ucsc-userapps: Replace dependenciesMuhammad Moinur Rahman2023-12-301-2/+1
* biology/diamond: Fix build on main after import of clang 17Dimitry Andric2023-12-292-0/+15
* */*: Refactor with IGNORE_WITH_MYSQLMuhammad Moinur Rahman2023-12-291-1/+1
* biology/libbigwig: Fix name-clashing in roundupJason E. Hale2023-12-281-0/+29
* biology/p5-Bio-DB-NCBIHelper: Update to 1.7.8Po-Chuan Hsieh2023-12-252-5/+5
* biology/hyphy: Update to 2.5.58Joseph Mingrone2023-12-233-4/+6
* biology/taxonkit: update 0.15.0 → 0.15.1Yuri Victorovich2023-12-192-7/+6
* biology/py-pyrodigal: update 3.1.1 → 3.2.1Yuri Victorovich2023-12-192-4/+4
* biology/gatk: update 4.4.0.0 → 4.5.0.0Yuri Victorovich2023-12-182-8/+8
* biology/sim4: fix EXPIRATION_DATERene Ladan2023-12-181-1/+1
* biology/recombine: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-4/+8
* biology/seqio: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-7/+11
* biology/sim4: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-0/+3
* biology/py-pybigwig: Update to 0.3.22Jason W. Bacon2023-12-163-4/+33
* biology/R-cran-Biobase: New portMuhammad Moinur Rahman2023-12-154-0/+24
* biology/R-cran-BiocGenerics: New portMuhammad Moinur Rahman2023-12-154-0/+21
* biology/R-cran-BiocManager: New portMuhammad Moinur Rahman2023-12-154-0/+22
* devel/grpc: Update to 1.60.0Po-Chuan Hsieh2023-12-151-0/+1
* biology/py-PySCeS: Fix build by adding USES=localbase:ldflagsYuri Victorovich2023-12-141-1/+1
* biology/locarna: Fix build on 14.x and mainYuri Victorovich2023-12-131-0/+1
* biology/btllib: update 1.6.2 → 1.7.0Yuri Victorovich2023-12-123-7/+7
* */*: bump PORTREVISION after the upgrade of OpenBLASThierry Thomas2023-12-123-3/+3
* biology/gcta: chase the upgrade of OpenBLASEijiro Shibusawa2023-12-125-3/+72
* */*: bump PORTREVISION after the upgrade of MPICH to 4.1.2Thierry Thomas2023-12-101-0/+1
* biology/py-resdk: relax chardet limitationThierry Thomas2023-12-081-1/+1
* all: Bump PORTREVISION after lang/go* updateAshish SHUKLA2023-12-075-3/+5
* biology/mashmap: update 3.1.1 → 3.1.2Yuri Victorovich2023-12-062-4/+4
* biology/py-python-libsbml: relax python version requirementRuslan Makhmatkhanov2023-12-031-1/+1
* biology/py-pysam: relax python version requirementRuslan Makhmatkhanov2023-12-031-1/+1
* biology/emboss: fix build on powerpc*Piotr Kubaj2023-12-031-0/+10
* devel/onetbb: Update to 2021.11.0Ganael LAPLANCHE2023-11-281-1/+1
* biology/vsearch: Update to 2.26.1Jason W. Bacon2023-11-262-4/+4
* biology/bifrost: Update to 1.3.1Jason W. Bacon2023-11-213-15/+4
* biology/seqkit: update 2.6.0 → 2.6.1Yuri Victorovich2023-11-192-8/+8
* biology/hyphy: Update to 2.5.57Joseph Mingrone2023-11-142-4/+4
* biology/seqkit: update 2.5.1 → 2.6.0Yuri Victorovich2023-11-132-9/+8
* biology/vsearch: Update to 2.25.0Jason W. Bacon2023-11-122-5/+4
* biology/bedtools: Update to 2.31.1Jason W. Bacon2023-11-082-4/+4
* biology/py-pyrodigal: update 3.1.0 → 3.1.1Yuri Victorovich2023-11-072-4/+4
* biology/hyphy: Update to 2.5.56Joseph Mingrone2023-11-072-4/+4
* */*: Update WWW to use HTTPS for sourceforge.net projectsRodrigo Osorio2023-11-065-5/+5
* biology/py-pyrodigal: update 2.2.0 → 3.1.0Yuri Victorovich2023-11-052-6/+7
* biology/seqwish: Add commentYuri Victorovich2023-11-051-1/+1
* biology/py-dna-features-viewer: Update to 3.1.3Jason W. Bacon2023-11-042-5/+4
* biology/kallisto: Update to 0.50.1,1Jason W. Bacon2023-11-043-5/+14
* biology/viennarna: update 2.6.3 → 2.6.4Yuri Victorovich2023-11-032-9/+14
* */*: Bump PORTREVISION for Ghostscript 10 changeMichael Osipov2023-11-031-0/+1
* */*: Update WWW to use HTTPS for sourceforge.net projectsRodrigo Osorio2023-11-012-2/+2
* */*: bump portrevision to chase CHOLMOD’s upgradeThierry Thomas2023-10-311-1/+1
* biology/babel: Update WWWRodrigo Osorio2023-10-301-3/+2
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