diff options
Diffstat (limited to 'science')
40 files changed, 220 insertions, 110 deletions
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile index ae5f9cb90bc8..c3ef9c28bb62 100644 --- a/science/R-cran-e1071/Makefile +++ b/science/R-cran-e1071/Makefile @@ -1,11 +1,11 @@ PORTNAME= e1071 -DISTVERSION= 1.7-16 +DISTVERSION= 1.7-17 CATEGORIES= science DISTNAME= ${PORTNAME}_${DISTVERSION} MAINTAINER= eduardo@FreeBSD.org COMMENT= Misc Functions of the Department of Statistics (e1071), TU Wien -WWW= https://cran.r-project.org/web/packages/e1071/ +WWW= https://cran.r-project.org/package=e1071 LICENSE= GPLv2+ diff --git a/science/R-cran-e1071/distinfo b/science/R-cran-e1071/distinfo index afa5a1d0ae40..ef816f55ad4a 100644 --- a/science/R-cran-e1071/distinfo +++ b/science/R-cran-e1071/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1726646778 -SHA256 (e1071_1.7-16.tar.gz) = 12d565e3033fdb94c96c1e49f1a08202fcfb9e2a804a2e6b8fd204bdd97c3a4f -SIZE (e1071_1.7-16.tar.gz) = 326734 +TIMESTAMP = 1766181199 +SHA256 (e1071_1.7-17.tar.gz) = 6debc371ad478c2aa6de1f6510e254e80e797de4974b855f63b35509a3c2ac87 +SIZE (e1071_1.7-17.tar.gz) = 318056 diff --git a/science/afni/Makefile b/science/afni/Makefile index 5b9d77b3920c..769ec31d6078 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -1,6 +1,6 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 25.3.01 +DISTVERSION= 25.3.03 CATEGORIES= science biology graphics perl5 python MAINTAINER= fernape@FreeBSD.org diff --git a/science/afni/distinfo b/science/afni/distinfo index eff28baed2a3..180cfc9188c5 100644 --- a/science/afni/distinfo +++ b/science/afni/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1764918918 -SHA256 (afni-afni-AFNI_25.3.01_GH0.tar.gz) = 29317f60586f1c652d0d47bd324a8241befb83c16e6df127633a776d0c8810d8 -SIZE (afni-afni-AFNI_25.3.01_GH0.tar.gz) = 53422684 +TIMESTAMP = 1765278441 +SHA256 (afni-afni-AFNI_25.3.03_GH0.tar.gz) = ee896e0168661fd7d708fa1dd454ab7334ae96bbba7c0ec93e63a5a21c69540d +SIZE (afni-afni-AFNI_25.3.03_GH0.tar.gz) = 53428208 diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist index 6f92d8e84736..02d5eba40f14 100644 --- a/science/afni/pkg-plist +++ b/science/afni/pkg-plist @@ -641,6 +641,7 @@ bin/nifti_tool bin/niml_feedme bin/niprobe bin/nsize +bin/obliquity_remover.py bin/open_apqc.py bin/p2dsetstat bin/parse_fs_lt_log.py diff --git a/science/cdo/Makefile b/science/cdo/Makefile index d1bdbc708e93..ee01054d2e79 100644 --- a/science/cdo/Makefile +++ b/science/cdo/Makefile @@ -12,7 +12,7 @@ WWW= https://code.mpimet.mpg.de/projects/cdo LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -USES= compiler:c++20-lang gmake libtool localbase pathfix python:build +USES= compiler:c++20-lang gmake libtool localbase python:build CONFIGURE_ARGS= --disable-data \ --disable-extra \ diff --git a/science/clhep/Makefile b/science/clhep/Makefile index 76313e29ad47..d4e6b0527c74 100644 --- a/science/clhep/Makefile +++ b/science/clhep/Makefile @@ -1,5 +1,5 @@ PORTNAME= clhep -PORTVERSION= 2.4.7.1 +DISTVERSION= 2.4.7.2 CATEGORIES= science math MASTER_SITES= https://proj-clhep.web.cern.ch/proj-clhep/dist1/ @@ -11,12 +11,15 @@ LICENSE= GPLv3 LGPL3 LICENSE_COMB= multi USES= cmake:testing compiler:c++11-lang perl5 tar:tgz +USE_GITLAB= yes +GL_SITE= https://gitlab.cern.ch +GL_ACCOUNT= ${PORTNAME:tu} +GL_PROJECT= ${PORTNAME:tu} +GL_TAGNAME= ${PORTNAME:tu}_${DISTVERSION:S/./_/g} USE_LDCONFIG= yes USE_PERL5= build -WRKSRC= ${WRKDIR}/${PORTVERSION}/${PORTNAME:tu} - -PLIST_SUB= VERSION="${PORTVERSION}" +PLIST_SUB= VERSION="${DISTVERSION}" post-patch: @${REINPLACE_CMD} -e \ diff --git a/science/clhep/distinfo b/science/clhep/distinfo index 86f0e68bf63f..0a292e0dcbab 100644 --- a/science/clhep/distinfo +++ b/science/clhep/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1697274749 -SHA256 (clhep-2.4.7.1.tgz) = 1c8304a7772ac6b99195f1300378c6e3ddf4ad07c85d64a04505652abb8a55f9 -SIZE (clhep-2.4.7.1.tgz) = 1229169 +TIMESTAMP = 1765961293 +SHA256 (CLHEP-CLHEP_2_4_7_2.tar.bz2) = 41fb3d045eac52d8abca3e6614dda058dfb1f78e3873fe3fe4610d552f74f6f7 +SIZE (CLHEP-CLHEP_2_4_7_2.tar.bz2) = 953450 diff --git a/science/colt/Makefile b/science/colt/Makefile index 88974b022de0..6edfe26a7c90 100644 --- a/science/colt/Makefile +++ b/science/colt/Makefile @@ -8,6 +8,11 @@ MAINTAINER= ports@FreeBSD.org COMMENT= Java package for scalable scientific and technical computing WWW= https://acs.lbl.gov/~hoschek/colt/ +DEPRECATED= java 8 only, unmaintained, no users in the ports tree, latest release was 2004 +EXPIRATION_DATE= 2026-04-13 + +JAVA_VERSION= 8 + NO_ARCH= yes WRKSRC= ${WRKDIR}/${PORTNAME} diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile index e12178ad5ce0..71918dddfcaa 100644 --- a/science/csvtk/Makefile +++ b/science/csvtk/Makefile @@ -1,7 +1,6 @@ PORTNAME= csvtk DISTVERSIONPREFIX= v -DISTVERSION= 0.35.0 -PORTREVISION= 2 +DISTVERSION= 0.36.0 CATEGORIES= science MAINTAINER= jwb@FreeBSD.org diff --git a/science/csvtk/distinfo b/science/csvtk/distinfo index f96f90ae121a..d08cea3d58ea 100644 --- a/science/csvtk/distinfo +++ b/science/csvtk/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1761745541 -SHA256 (go/science_csvtk/csvtk-v0.35.0/v0.35.0.mod) = eeb9915dc3bd2695d637683b3da2a00d5c2c24bf995b0476a7bfa44a35916d4a -SIZE (go/science_csvtk/csvtk-v0.35.0/v0.35.0.mod) = 2595 -SHA256 (go/science_csvtk/csvtk-v0.35.0/v0.35.0.zip) = bb258e5ac8ce551063cf8c818be75ab055458c34dacf2e911783c2040017e1e8 -SIZE (go/science_csvtk/csvtk-v0.35.0/v0.35.0.zip) = 2659159 -SHA256 (go/science_csvtk/csvtk-v0.35.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 -SIZE (go/science_csvtk/csvtk-v0.35.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234 +TIMESTAMP = 1766073314 +SHA256 (go/science_csvtk/csvtk-v0.36.0/v0.36.0.mod) = 56ea275fd443212776ac029af59e8ba5054e3c84a143c89f57e566acae6ebfc0 +SIZE (go/science_csvtk/csvtk-v0.36.0/v0.36.0.mod) = 2595 +SHA256 (go/science_csvtk/csvtk-v0.36.0/v0.36.0.zip) = 4149c91353a96d8aeecdd07f710aab7c8535855f37d001227c73a1538658d479 +SIZE (go/science_csvtk/csvtk-v0.36.0/v0.36.0.zip) = 2661444 +SHA256 (go/science_csvtk/csvtk-v0.36.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 +SIZE (go/science_csvtk/csvtk-v0.36.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234 diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index b05b532e61d9..1ff10398c473 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -1,6 +1,5 @@ PORTNAME= gnudatalanguage -PORTVERSION= 1.1.1 -PORTREVISION= 3 +PORTVERSION= 1.1.3 DISTVERSIONPREFIX= v CATEGORIES= science lang MASTER_SITES= https://github.com/${PORTNAME}/gdl/releases/download/v${PORTVERSION}/ @@ -128,18 +127,4 @@ post-install: (cd ${WRKSRC}/testsuite && ${COPYTREE_SHARE} \* ${STAGEDIR}${EXAMPLESDIR}/testsuite/) .endif -.if defined(MAINTAINER_MODE) -regression-test: install -. if defined(BUILD_PYTHON_MODULE) - @${ECHO_CMD} 'import GDL' > ${WRKDIR}/testgdl.py - @${ECHO_CMD} 'print GDL.function("sin",(1,))' >> ${WRKDIR}/testgdl.py - ${PYTHON_CMD} ${WRKDIR}/testgdl.py -. else - @${ECHO_CMD} ".RUN ${EXAMPLESDIR}/testsuite/test_suite.pro" \ - > ${WRKDIR}/testgdl - @${ECHO_CMD} "exit" >> ${WRKDIR}/testgdl - ${PREFIX}/bin/gdl < ${WRKDIR}/testgdl -. endif -.endif - .include <bsd.port.mk> diff --git a/science/gnudatalanguage/distinfo b/science/gnudatalanguage/distinfo index 8e691c6239fd..dbdfde76869f 100644 --- a/science/gnudatalanguage/distinfo +++ b/science/gnudatalanguage/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1742749829 -SHA256 (gdl-v1.1.1.tar.gz) = 744ed3abcdc5e1bbf31147a8a0c21c33662f200b6096ee3d3adedd160a3a9662 -SIZE (gdl-v1.1.1.tar.gz) = 33813887 +TIMESTAMP = 1766140431 +SHA256 (gdl-v1.1.3.tar.gz) = 7f2b39cec13d7589e7d810ca2197ffb080f80d3de0de440a8cba26e21cadf8a1 +SIZE (gdl-v1.1.3.tar.gz) = 33933705 diff --git a/science/gnudatalanguage/files/patch-testsuite_get__path__to__exe.pro b/science/gnudatalanguage/files/patch-testsuite_get__path__to__exe.pro new file mode 100644 index 000000000000..748a4629e36f --- /dev/null +++ b/science/gnudatalanguage/files/patch-testsuite_get__path__to__exe.pro @@ -0,0 +1,11 @@ +--- testsuite/get_path_to_exe.pro.orig 2025-12-18 17:13:01 UTC ++++ testsuite/get_path_to_exe.pro +@@ -11,7 +11,7 @@ known_case=0 + ; + ; On Linux, this is fine with GDL, IDL & FL + ; +-if (STRLOWCASE(!version.os) EQ 'linux') then begin ++if (STRLOWCASE(!version.os_family) eq 'unix') then begin + get_pid=FILE_READLINK('/proc/self') + get_abspath_to_exe=FILE_READLINK('/proc/'+get_pid+'/exe') + known_case=1 diff --git a/science/gnudatalanguage/pkg-plist b/science/gnudatalanguage/pkg-plist index b3df28380cfd..6c13765948b4 100644 --- a/science/gnudatalanguage/pkg-plist +++ b/science/gnudatalanguage/pkg-plist @@ -37,6 +37,9 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/demo_graphics1.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/demo_graphics2.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/demo_graphics3.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/dlm/README +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/dlm/testmodule.c +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/dlm/testmodule.dlm %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/errors_add.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/errors_cumul.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/errors_reset.pro @@ -63,6 +66,7 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/hdf5-struct-test.h5 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/idl.xdr %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/indgen_sample.sav +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/example_event_handling.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_all_projs.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_axis.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/interactive_tests/test_besel.pro @@ -111,15 +115,12 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_file_info.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_point_lun.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_ps_decomposed.pro -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_readf.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_skip_lun.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_spawn_unit.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_step.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/spawn_is_dangerous/test_zip.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/string.h5 -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test-read_ascii.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test-read_ascii.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test-swap_endian.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_ac_correlate.pro.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_all_basic_functions.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_angles.pro @@ -147,7 +148,6 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3061072.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3081887.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3085858.pro -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3086851.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3091599.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3091610.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3100945.pro @@ -161,7 +161,6 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3189072.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3199465.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3285659.pro -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3286031.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3290532.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3296360.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3298378.pro @@ -175,7 +174,6 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3559291.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3572473.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_3595172.pro -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_573.tmp %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_635.dat %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_635.f90 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_bug_635.pro @@ -221,6 +219,7 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_erfs.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_erode.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_execute.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_expand_path.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_expint.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_extra_keywords.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_factorial.pro @@ -269,6 +268,7 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_idl_validname.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_idlneturl.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_image_statistics.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_imsl_zeropoly.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_indepth_basic_functions.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_indgen.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_interpol.pro @@ -340,7 +340,9 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_qromb.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_qromo.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_r_correlate.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_read_ascii.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_read_jpeg.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_readf.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_readf_with_crlf.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_reads.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_rebin.pro @@ -374,6 +376,7 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_struct_assign.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_structures.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_suite.pro +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_swap_endian.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_systime.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_tag_names.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_tic_toc.pro @@ -400,13 +403,13 @@ bin/gdl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_xmlsax.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_xyztick_get.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_zero_divide.pro -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/test_zeropoly.pro %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/24bit_color.tif %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/24bit_color.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/8bit_gray_geo.tif %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/8bit_gray_geo.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/8bit_gray_tiled.tif %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/tiff/8bit_gray_tiled.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/vlen_strings.h5 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/testsuite/wrong/test_sem.pro %%DATADIR%%/AUTHORS %%DATADIR%%/README @@ -438,6 +441,7 @@ bin/gdl %%DATADIR%%/lib/cvttobm.pro %%DATADIR%%/lib/cw_bgroup.pro %%DATADIR%%/lib/cw_bgroup_donotuseyet.pro +%%DATADIR%%/lib/cw_field.pro %%DATADIR%%/lib/define_msgblk.pro %%DATADIR%%/lib/define_msgblk_from_file.pro %%DATADIR%%/lib/delvar.pro @@ -497,10 +501,10 @@ bin/gdl %%DATADIR%%/lib/loadct.pro %%DATADIR%%/lib/make_dll.pro %%DATADIR%%/lib/map/gdl_map_proj_init_common.pro -%%DATADIR%%/lib/map/gdl_set_map_limits.pro %%DATADIR%%/lib/map/gdlcommon_mapprojections_common.pro %%DATADIR%%/lib/map/gdldrawshapecompound.pro %%DATADIR%%/lib/map/gdldrawshapefile.pro +%%DATADIR%%/lib/map/griddata.pro %%DATADIR%%/lib/map/map_adjlon.pro %%DATADIR%%/lib/map/map_clip_set.pro %%DATADIR%%/lib/map/map_continents.pro @@ -651,6 +655,7 @@ bin/gdl %%DATADIR%%/lib/utilities/app_user_dir.pro %%DATADIR%%/lib/utilities/app_user_dir_query.pro %%DATADIR%%/lib/utilities/color2color.pro +%%DATADIR%%/lib/utilities/dlm_register.pro %%DATADIR%%/lib/utilities/funct.pro %%DATADIR%%/lib/utilities/gdl_gaussfunct.pro %%DATADIR%%/lib/utilities/gdl_implied_print.pro @@ -740,3 +745,4 @@ bin/gdl %%DATADIR%%/resource/maps/projections.ods %%DATADIR%%/resource/randomgenerators_parallel.cpp share/man/man1/gdl.1.gz +@dir %%DATADIR%%/dlm diff --git a/science/kalzium/distinfo b/science/kalzium/distinfo index f93bc65bb23c..dbcc472221ea 100644 --- a/science/kalzium/distinfo +++ b/science/kalzium/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1762264756 -SHA256 (KDE/release-service/25.08.3/kalzium-25.08.3.tar.xz) = 36e6c4f46e1a5daaace14ebb5b1f6dac3429ad5df3d4fc1f0adeaec3e28e420b -SIZE (KDE/release-service/25.08.3/kalzium-25.08.3.tar.xz) = 22663696 +TIMESTAMP = 1765478756 +SHA256 (KDE/release-service/25.12.0/kalzium-25.12.0.tar.xz) = 9ff53a58e655a674056618522b7a2a44fa54b7e1f72f91b4d20104c28fe82b0b +SIZE (KDE/release-service/25.12.0/kalzium-25.12.0.tar.xz) = 22666820 diff --git a/science/libkml/Makefile b/science/libkml/Makefile index 4f393b67245b..2e708f9c4b29 100644 --- a/science/libkml/Makefile +++ b/science/libkml/Makefile @@ -14,7 +14,7 @@ LIB_DEPENDS= libboost_thread.so:devel/boost-libs \ libexpat.so:textproc/expat2 \ liburiparser.so:net/uriparser -USES= cmake compiler:c++11-lang minizip pathfix +USES= cmake compiler:c++11-lang minizip CMAKE_ARGS= -DEXPAT_LIBRARY=${LOCALBASE}/lib/libexpat.so CMAKE_OFF= BUILD_TESTING WITH_JAVA WITH_PYTHON WITH_SWIG diff --git a/science/netcdf-cxx/Makefile b/science/netcdf-cxx/Makefile index d8c9f9934e3c..c27657275990 100644 --- a/science/netcdf-cxx/Makefile +++ b/science/netcdf-cxx/Makefile @@ -18,7 +18,7 @@ LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell LIB_DEPENDS= libnetcdf.so:science/netcdf -USES= libtool localbase pathfix +USES= libtool localbase CPPFLAGS+= -fPIC -DPIC GNU_CONFIGURE= yes diff --git a/science/netcdf-fortran/Makefile b/science/netcdf-fortran/Makefile index ecb9a52e7e52..b3f9cb96f91b 100644 --- a/science/netcdf-fortran/Makefile +++ b/science/netcdf-fortran/Makefile @@ -17,7 +17,7 @@ LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell BUILD_DEPENDS= netcdf>=4.9.0:science/netcdf LIB_DEPENDS= libnetcdf.so:science/netcdf -USES= fortran gmake libtool localbase makeinfo pathfix +USES= fortran gmake libtool localbase makeinfo CPPFLAGS+= -fPIC -DPIC -DgFortran GNU_CONFIGURE= yes diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile index c241bd9f7d5a..0fe19a3a0cd0 100644 --- a/science/netcdf/Makefile +++ b/science/netcdf/Makefile @@ -17,7 +17,7 @@ LIB_DEPENDS= libcurl.so:ftp/curl \ libhdf5.so:science/hdf5 \ libzstd.so:archivers/zstd -USES= gmake libtool localbase ncurses pathfix pkgconfig:run +USES= gmake libtool localbase ncurses pkgconfig:run CONFIGURE_ARGS= --disable-filter-testing --disable-libxml2 \ --enable-byterange --enable-curl --enable-dap --enable-hdf5 --enable-logging diff --git a/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp b/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp new file mode 100644 index 000000000000..c0ec4a17af5a --- /dev/null +++ b/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp @@ -0,0 +1,16 @@ +Fix build with Qt 6.10.1. The QString::arg() method no longer accepts +implicit conversions. [1] + +[1] https://doc.qt.io/qt-6/qstring.html#arg-2 + +--- OMEdit/OMEditLIB/Modeling/ModelWidgetContainer.cpp.orig 2025-11-24 16:18:03 UTC ++++ OMEdit/OMEditLIB/Modeling/ModelWidgetContainer.cpp +@@ -3943,7 +3943,7 @@ void GraphicsView::getCoordinateSystemAndGraphics(QStr + } + // add the initial scale + if (mCoordinateSystem.hasInitialScale()) { +- coOrdinateSystemList.append(QString("initialScale=%1").arg(mCoordinateSystem.getInitialScale())); ++ coOrdinateSystemList.append(QString("initialScale=%1").arg(static_cast<int>(mCoordinateSystem.getInitialScale()))); + } + // add the grid + if (mCoordinateSystem.hasGrid()) { diff --git a/science/opsin/Makefile b/science/opsin/Makefile index f4e98275bd30..b9c6e1f5da9d 100644 --- a/science/opsin/Makefile +++ b/science/opsin/Makefile @@ -15,7 +15,6 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= maven>0:devel/maven USES= java -JAVA_VERSION= 17 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=29730, tid=0x000000000002d236 guarantee(val < (1U << nbits)) failed: Field too big for insn NO_ARCH= yes diff --git a/science/opsin/files/patch-pom.xml b/science/opsin/files/patch-pom.xml new file mode 100644 index 000000000000..97c13f852077 --- /dev/null +++ b/science/opsin/files/patch-pom.xml @@ -0,0 +1,22 @@ +--- pom.xml.orig 2025-12-13 15:51:13 UTC ++++ pom.xml +@@ -60,8 +60,8 @@ + <artifactId>maven-compiler-plugin</artifactId>
+ <version>3.1</version>
+ <configuration>
+- <source>1.7</source>
+- <target>1.7</target>
++ <source>1.8</source>
++ <target>1.8</target>
+ </configuration>
+ </plugin>
+ <!-- Include POM.xml in source JAR -->
+@@ -141,7 +141,7 @@ + <artifactId>maven-pmd-plugin</artifactId>
+ <version>3.1</version>
+ <configuration>
+- <targetJdk>1.7</targetJdk>
++ <targetJdk>1.8</targetJdk>
+ <linkXref>true</linkXref>
+ </configuration>
+ </plugin>
diff --git a/science/orthanc-postgresql/Makefile b/science/orthanc-postgresql/Makefile index 0c3a2281fe46..efdb2d2eb7c9 100644 --- a/science/orthanc-postgresql/Makefile +++ b/science/orthanc-postgresql/Makefile @@ -1,6 +1,5 @@ PORTNAME= orthanc-postgresql -DISTVERSION= 9.0 -PORTREVISION= 1 +DISTVERSION= 10.0 CATEGORIES= science MASTER_SITES= https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/:pgsql \ https://orthanc.uclouvain.be/downloads/sources/orthanc/:orthanc \ diff --git a/science/orthanc-postgresql/distinfo b/science/orthanc-postgresql/distinfo index eb471a05a907..ad08b10220c0 100644 --- a/science/orthanc-postgresql/distinfo +++ b/science/orthanc-postgresql/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1764254021 -SHA256 (orthanc/OrthancPostgreSQL-9.0.tar.gz) = 92c3fde9c3baad343a4de7090759274a733ac28af06037538dbf70f0ee50cd75 -SIZE (orthanc/OrthancPostgreSQL-9.0.tar.gz) = 790691 +TIMESTAMP = 1765988345 +SHA256 (orthanc/OrthancPostgreSQL-10.0.tar.gz) = 64c6dd8055bb4aa6055be86a5beedb96cfa974103343f5dc26d219d3d28065b8 +SIZE (orthanc/OrthancPostgreSQL-10.0.tar.gz) = 869242 SHA256 (orthanc/Orthanc-1.12.10.tar.gz) = b5d6934d123182fb2186cd54ef7f203be06b544afb03df67b0c64ad68d6c9286 SIZE (orthanc/Orthanc-1.12.10.tar.gz) = 2192892 SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc diff --git a/science/packmol/Makefile b/science/packmol/Makefile index aa9368fabd48..3d175e6dde2b 100644 --- a/science/packmol/Makefile +++ b/science/packmol/Makefile @@ -1,6 +1,6 @@ PORTNAME= packmol DISTVERSIONPREFIX= v -DISTVERSION= 21.1.3 +DISTVERSION= 21.1.4 CATEGORIES= science MAINTAINER= eduardo@FreeBSD.org diff --git a/science/packmol/distinfo b/science/packmol/distinfo index 04a34d95fab4..440d62f0dbb9 100644 --- a/science/packmol/distinfo +++ b/science/packmol/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1763590917 -SHA256 (m3g-packmol-v21.1.3_GH0.tar.gz) = 21a22e4e3f183e2c594c2e1d85cd7c16a95a8c609b36fc28d653f6c2c2d54c0c -SIZE (m3g-packmol-v21.1.3_GH0.tar.gz) = 637489 +TIMESTAMP = 1766090725 +SHA256 (m3g-packmol-v21.1.4_GH0.tar.gz) = 62e0bf9a5d0671ff1f03d57671c8bb91fd16790fcc07f0e68f1829b1f34fae48 +SIZE (m3g-packmol-v21.1.4_GH0.tar.gz) = 637997 diff --git a/science/paraview/files/patch-qt-6.10.1-fix b/science/paraview/files/patch-qt-6.10.1-fix new file mode 100644 index 000000000000..5d3d326bca0f --- /dev/null +++ b/science/paraview/files/patch-qt-6.10.1-fix @@ -0,0 +1,77 @@ +Backport of upstream patches to fix build with Qt 6.10.1. + +https://gitlab.kitware.com/paraview/paraview/-/commit/cd7e633df299c29e8e76c34df83d8c67dfb386a1 +https://gitlab.kitware.com/paraview/qttesting/-/commit/9ba0a2104840ac5ddf0b73a36d72b282bf6b03d9 + +--- Qt/Core/pqFlatTreeViewEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC ++++ Qt/Core/pqFlatTreeViewEventTranslator.cxx +@@ -73,8 +73,8 @@ bool pqFlatTreeViewEventTranslator::translateEvent(QOb + + QString info = QString("%1,%2,%3,%4,%5,%6") + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers()) ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers())) + .arg(relPt.x()) + .arg(relPt.y()) + .arg(idxStr); +--- Qt/Core/pqQVTKWidgetEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC ++++ Qt/Core/pqQVTKWidgetEventTranslator.cxx +@@ -85,8 +85,8 @@ bool pqQVTKWidgetEventTranslator::translateEvent( + .arg(normalized_x) + .arg(normalized_y) + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers())); ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers()))); + } + return true; + break; +@@ -108,15 +108,15 @@ bool pqQVTKWidgetEventTranslator::translateEvent( + .arg(normalized_x) + .arg(normalized_y) + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers())); ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers()))); + Q_EMIT recordEvent(widget, "mouseRelease", + QString("(%1,%2,%3,%4,%5)") + .arg(normalized_x) + .arg(normalized_y) + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers())); ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers()))); + } + return true; + break; +--- ThirdParty/QtTesting/vtkqttesting/pqAbstractItemViewEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC ++++ ThirdParty/QtTesting/vtkqttesting/pqAbstractItemViewEventTranslator.cxx +@@ -118,8 +118,8 @@ bool pqAbstractItemViewEventTranslator::translateEvent + + QString info = QString("%1,%2,%3,%4,%5,%6") + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers()) ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers())) + .arg(relPt.x()) + .arg(relPt.y()) + .arg(idxStr); +--- ThirdParty/QtTesting/vtkqttesting/pqBasicWidgetEventTranslator.cxx.orig 2025-12-05 14:13:11 UTC ++++ ThirdParty/QtTesting/vtkqttesting/pqBasicWidgetEventTranslator.cxx +@@ -78,8 +78,8 @@ bool pqBasicWidgetEventTranslator::translateEvent( + QMouseEvent* mouseEvent = static_cast<QMouseEvent*>(event); + QString info = QString("%1,%2,%3,%4,%5") + .arg(mouseEvent->button()) +- .arg(mouseEvent->buttons()) +- .arg(mouseEvent->modifiers()) ++ .arg(static_cast<int>(mouseEvent->buttons())) ++ .arg(static_cast<int>(mouseEvent->modifiers())) + .arg(mouseEvent->x()) + .arg(mouseEvent->y()); + diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile index e131d647de3b..8f20c0b5240c 100644 --- a/science/pnetcdf/Makefile +++ b/science/pnetcdf/Makefile @@ -14,7 +14,7 @@ LICENSE_NAME= NetCDF License LICENSE_FILE= ${WRKSRC}/COPYRIGHT LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell -USES= fortran gmake libtool mpi:${FLAVOR} pathfix perl5 +USES= fortran gmake libtool mpi:${FLAVOR} perl5 USE_PERL5= build CFLAGS+= -fPIC diff --git a/science/py-pyked/Makefile b/science/py-pyked/Makefile index 44c97100f135..52b4ef9ea5f8 100644 --- a/science/py-pyked/Makefile +++ b/science/py-pyked/Makefile @@ -2,7 +2,7 @@ PORTNAME= pyked DISTVERSIONPREFIX= v DISTVERSION= 0.4.1-16 DISTVERSIONSUFFIX= -gfcccaf8 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science python #MASTER_SITES= PYPI 0.4.1 is broken there PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -15,7 +15,7 @@ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE RUN_DEPENDS= ${PYNUMPY} \ - ${PYTHON_PKGNAMEPREFIX}Cerberus>=1.0.0:devel/py-cerberus@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}cerberus>=1.0.0:devel/py-cerberus@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}habanero>=0.6.0:www/py-habanero@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>=0.7.2:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}uncertainties>=3.0.1:math/py-uncertainties@${PY_FLAVOR} \ diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile index 26690ce9ba2e..6db6bccf7ac2 100644 --- a/science/py-qiskit/Makefile +++ b/science/py-qiskit/Makefile @@ -1,6 +1,6 @@ PORTNAME= qiskit DISTVERSION= 2.2.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/q/Makefile b/science/q/Makefile index 06a21db399e2..19152626bfc1 100644 --- a/science/q/Makefile +++ b/science/q/Makefile @@ -11,7 +11,7 @@ WWW= https://github.com/qusers/Q6 LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/../LICENSE -USES= fortran gmake +USES= fortran:gfortran gmake USE_GITHUB= yes GH_ACCOUNT= qusers diff --git a/science/qt6-quick3dphysics/distinfo b/science/qt6-quick3dphysics/distinfo index a1a299cb31b7..a5ac11a7e2a9 100644 --- a/science/qt6-quick3dphysics/distinfo +++ b/science/qt6-quick3dphysics/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1759303916 -SHA256 (KDE/Qt/6.9.3/qtquick3dphysics-everywhere-src-6.9.3.tar.xz) = dcd7b22d745d249eb602c5d4d8af8a8e9d11217ccb42b3dd611bb047153b5a6e -SIZE (KDE/Qt/6.9.3/qtquick3dphysics-everywhere-src-6.9.3.tar.xz) = 4668392 +TIMESTAMP = 1763965268 +SHA256 (KDE/Qt/6.10.1/qtquick3dphysics-everywhere-src-6.10.1.tar.xz) = d973847df1be6ee711e771df923537fb62fcac5bf57100f2ebc6f7742c8d2fee +SIZE (KDE/Qt/6.10.1/qtquick3dphysics-everywhere-src-6.10.1.tar.xz) = 4669412 diff --git a/science/qt6-quick3dphysics/pkg-plist b/science/qt6-quick3dphysics/pkg-plist index 769b63cf2550..a29926d0318f 100644 --- a/science/qt6-quick3dphysics/pkg-plist +++ b/science/qt6-quick3dphysics/pkg-plist @@ -107,8 +107,8 @@ lib/cmake/Qt6Quick3DPhysicsPrivate/Qt6Quick3DPhysicsPrivateVersionlessTargets.cm %%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so %%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so.6 %%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so.%%FULLVER%% -%%QT_LIBDIR%%/metatypes/qt6quick3dphysics_%%CMAKE_BUILD_TYPE%%_metatypes.json -%%QT_LIBDIR%%/metatypes/qt6quick3dphysicshelpers_%%CMAKE_BUILD_TYPE%%_metatypes.json +%%QT_LIBDIR%%/metatypes/qt6quick3dphysics_metatypes.json +%%QT_LIBDIR%%/metatypes/qt6quick3dphysicshelpers_metatypes.json %%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysics.pri %%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysics_private.pri %%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysicshelpers.pri diff --git a/science/siesta/Makefile b/science/siesta/Makefile index 9b7f782f1d5c..01d1dbcd203e 100644 --- a/science/siesta/Makefile +++ b/science/siesta/Makefile @@ -16,7 +16,7 @@ BROKEN_aarch64= Lack of IEEE754 support in gcc causes "Cannot find an intrinsic LIB_DEPENDS= libblas.so:math/blas \ liblapack.so:math/lapack -USES= fortran gmake localbase:ldflags +USES= fortran:gfortran gmake localbase:ldflags ALL_TARGET= default diff --git a/science/step/distinfo b/science/step/distinfo index 21ad428a5628..0a8b11c7c8a4 100644 --- a/science/step/distinfo +++ b/science/step/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1762264758 -SHA256 (KDE/release-service/25.08.3/step-25.08.3.tar.xz) = b1ddce4f52a0b75188616c062be4fa7ad5d3d7725c211ec011719a9ad27e86f9 -SIZE (KDE/release-service/25.08.3/step-25.08.3.tar.xz) = 1016244 +TIMESTAMP = 1765478759 +SHA256 (KDE/release-service/25.12.0/step-25.12.0.tar.xz) = c80c54d8b6d61e1a70b631241cc40aca69368d0c95e40408fc3342a39ccb0b23 +SIZE (KDE/release-service/25.12.0/step-25.12.0.tar.xz) = 1019368 diff --git a/science/step/files/patch-stepcore_object.h b/science/step/files/patch-stepcore_object.h deleted file mode 100644 index 5b2f47415a27..000000000000 --- a/science/step/files/patch-stepcore_object.h +++ /dev/null @@ -1,21 +0,0 @@ -Clang >= 19.1.0-rc1 requires a template argument list after an identifier -prefixed by the template keyword. [1] - -/wrkdirs/usr/ports/science/step/work/step-23.08.5/stepcore/object.h:252:45: -error: a template argument list is expected after a name prefixed by the -template keyword [-Wmissing-template-arg-list-after-template-kw] - 252 | if(!src || !src->metaObject()->template inherits(_Dst())) return NULL; - -[1] https://github.com/llvm/llvm-project/commit/f46d1463b835560d90ad3ac02b63c771e4ebe566 - ---- stepcore/object.h.orig 2024-02-10 03:35:30 UTC -+++ stepcore/object.h -@@ -249,7 +249,7 @@ _Dst stepcore_cast(_Src src) { - /** Casts between pointers to Object */ - template<class _Dst, class _Src> // XXX: implement it better - _Dst stepcore_cast(_Src src) { -- if(!src || !src->metaObject()->template inherits(_Dst())) return NULL; -+ if(!src || !src->metaObject()->template inherits<_Dst>(_Dst())) return NULL; - return static_cast<_Dst>(src); - } - diff --git a/science/tinker/Makefile b/science/tinker/Makefile index f66cb43850b0..5f4e8fe9c739 100644 --- a/science/tinker/Makefile +++ b/science/tinker/Makefile @@ -1,6 +1,6 @@ PORTNAME= tinker DISTVERSIONPREFIX= v -DISTVERSION= 25.5.4 +DISTVERSION= 25.6.3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/tinker/distinfo b/science/tinker/distinfo index c80318510948..1632fdfa6948 100644 --- a/science/tinker/distinfo +++ b/science/tinker/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1763921430 -SHA256 (TinkerTools-tinker-v25.5.4_GH0.tar.gz) = 410d02d3fe7b42b124cc38cef8cf3c077037a099465c799259f60bdae4e367b2 -SIZE (TinkerTools-tinker-v25.5.4_GH0.tar.gz) = 34197683 +TIMESTAMP = 1765785371 +SHA256 (TinkerTools-tinker-v25.6.3_GH0.tar.gz) = 83429088ba19ecd1673e53fc29c60d1787ed5c4f3ec1a4e381bfa48ab55c4af3 +SIZE (TinkerTools-tinker-v25.6.3_GH0.tar.gz) = 34581826 diff --git a/science/tinker/pkg-plist b/science/tinker/pkg-plist index cf05ef8ea37c..7d584cc522c3 100644 --- a/science/tinker/pkg-plist +++ b/science/tinker/pkg-plist @@ -107,8 +107,8 @@ bin/xyzpdb %%DATADIR%%/params/water21.prm %%DATADIR%%/params/water22.prm %%DATADIR%%/test/0README +%%DATADIR%%/test/anion.1st %%DATADIR%%/test/anion.dat -%%DATADIR%%/test/anion.dyn0 %%DATADIR%%/test/anion.key %%DATADIR%%/test/anion.log %%DATADIR%%/test/anion.run @@ -219,6 +219,14 @@ bin/xyzpdb %%DATADIR%%/test/salt.key %%DATADIR%%/test/salt.log %%DATADIR%%/test/salt.run +%%DATADIR%%/test/scorpion.cif +%%DATADIR%%/test/scorpion.key +%%DATADIR%%/test/scorpion.log +%%DATADIR%%/test/scorpion.run +%%DATADIR%%/test/tip4p.key +%%DATADIR%%/test/tip4p.log +%%DATADIR%%/test/tip4p.run +%%DATADIR%%/test/tip4p.xyz %%DATADIR%%/test/vasopressin.key %%DATADIR%%/test/vasopressin.log %%DATADIR%%/test/vasopressin.run |