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-rw-r--r--science/PETSc/Makefile1
-rw-r--r--science/abinit/Makefile1
-rw-r--r--science/afni/Makefile2
-rw-r--r--science/afni/distinfo6
-rw-r--r--science/bout++/Makefile4
-rw-r--r--science/cdo/Makefile3
-rw-r--r--science/elk/Makefile2
-rw-r--r--science/fleur/Makefile2
-rw-r--r--science/gchemutils/Makefile2
-rw-r--r--science/ghemical/Makefile2
-rw-r--r--science/ghmm/Makefile2
-rw-r--r--science/kalzium/distinfo6
-rw-r--r--science/openbabel/Makefile2
-rw-r--r--science/openmodelica/Makefile3
-rw-r--r--science/orthanc/Makefile4
-rw-r--r--science/paraview/Makefile2
-rw-r--r--science/py-eccodes/Makefile2
-rw-r--r--science/py-eccodes/distinfo6
-rw-r--r--science/py-pymol/Makefile2
-rw-r--r--science/py-qiskit/Makefile2
-rw-r--r--science/qbox/Makefile3
-rw-r--r--science/qmcpack/Makefile2
-rw-r--r--science/salome-kernel/Makefile3
-rw-r--r--science/step/distinfo6
24 files changed, 39 insertions, 31 deletions
diff --git a/science/PETSc/Makefile b/science/PETSc/Makefile
index 4684b21a9b24..b7ab3e403b9f 100644
--- a/science/PETSc/Makefile
+++ b/science/PETSc/Makefile
@@ -1,5 +1,6 @@
PORTNAME= PETSc
DISTVERSION= 3.22.4
+PORTREVISION= 1
CATEGORIES= science devel
MASTER_SITES= https://web.cels.anl.gov/projects/petsc/download/release-snapshots/
DISTNAME= ${PORTNAME:tl}-${DISTVERSION}
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index 2d49adde13b9..a310bee72cd0 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -1,5 +1,6 @@
PORTNAME= abinit
DISTVERSION= 10.2.7
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 062b567c1ec2..85c39533a0bb 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -1,6 +1,6 @@
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
-DISTVERSION= 25.1.15
+DISTVERSION= 25.2.00
CATEGORIES= science biology graphics perl5 python
MAINTAINER= fernape@FreeBSD.org
diff --git a/science/afni/distinfo b/science/afni/distinfo
index e196c92bdb90..2ed0998ce153 100644
--- a/science/afni/distinfo
+++ b/science/afni/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1750240671
-SHA256 (afni-afni-AFNI_25.1.15_GH0.tar.gz) = d1c183b1af83b487916c0c9e960927aa3204c7d73106e63d01045447f8ae2eaa
-SIZE (afni-afni-AFNI_25.1.15_GH0.tar.gz) = 53283451
+TIMESTAMP = 1751437927
+SHA256 (afni-afni-AFNI_25.2.00_GH0.tar.gz) = bb9b51eaea6d8dd900370d52da78eaf5ef4ab0b1bd67513ba4872bbf73426152
+SIZE (afni-afni-AFNI_25.2.00_GH0.tar.gz) = 53283529
diff --git a/science/bout++/Makefile b/science/bout++/Makefile
index 2eb36e82ec9e..bbdf2813b4cd 100644
--- a/science/bout++/Makefile
+++ b/science/bout++/Makefile
@@ -1,7 +1,7 @@
PORTNAME= bout++
DISTVERSIONPREFIX= v
DISTVERSION= 5.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science math # physics
MAINTAINER= yuri@FreeBSD.org
@@ -15,7 +15,7 @@ BUILD_DEPENDS= gmake:devel/gmake
LIB_DEPENDS= libfftw3.so:math/fftw3 \
libfmt.so:devel/libfmt \
libopenblas.so:math/openblas \
- libuuid.so:misc/e2fsprogs-libuuid
+ libuuid.so:misc/libuuid
RUN_DEPENDS= bash:shells/bash \
${PYTHON_PKGNAMEPREFIX}matplotlib>=3.2.1:math/py-matplotlib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}natsort>=8.1.0:devel/py-natsort@${PY_FLAVOR} \
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index 3544e890ac51..783eae420b68 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -1,5 +1,6 @@
PORTNAME= cdo
PORTVERSION= 2.5.2
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/29938/ \
LOCAL/sunpoet
@@ -59,7 +60,7 @@ SZIP_LIB_DEPENDS= libsz.so:science/libaec
UDUNITS_CONFIGURE_WITH= udunits2
UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits
UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no
-UUID_LIB_DEPENDS= libuuid.so:misc/e2fsprogs-libuuid
+UUID_LIB_DEPENDS= libuuid.so:misc/libuuid
post-patch:
@${REINPLACE_CMD} -e '/^SUBDIRS = / s| contrib||' ${WRKSRC}/Makefile.in
diff --git a/science/elk/Makefile b/science/elk/Makefile
index a092be431179..3901d4ab49f2 100644
--- a/science/elk/Makefile
+++ b/science/elk/Makefile
@@ -1,6 +1,6 @@
PORTNAME= elk
DISTVERSION= 10.3.12
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}
PKGNAMESUFFIX= -chemistry
diff --git a/science/fleur/Makefile b/science/fleur/Makefile
index f8e5cc7bf64b..062471209bd4 100644
--- a/science/fleur/Makefile
+++ b/science/fleur/Makefile
@@ -1,6 +1,6 @@
PORTNAME= fleur
DISTVERSION= 7.2
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science # chemistry
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile
index 7c54225e49b6..644ef599a5f7 100644
--- a/science/gchemutils/Makefile
+++ b/science/gchemutils/Makefile
@@ -1,6 +1,6 @@
PORTNAME= gchemutils
PORTVERSION= 0.14.17
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= SAVANNAH/${PORTNAME}/${PORTVERSION:R}
DISTNAME= gnome-chemistry-utils-${PORTVERSION}
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 0d393aa81339..3900f5d87dc8 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -1,6 +1,6 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
-PORTREVISION= 28
+PORTREVISION= 29
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
MASTER_SITE_SUBDIR= release20111012 current
diff --git a/science/ghmm/Makefile b/science/ghmm/Makefile
index b665afc62876..2b596af2cb00 100644
--- a/science/ghmm/Makefile
+++ b/science/ghmm/Makefile
@@ -1,6 +1,6 @@
PORTNAME= ghmm
DISTVERSION= 0.9-rc3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science math
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${DISTVERSION}
diff --git a/science/kalzium/distinfo b/science/kalzium/distinfo
index 3ca9e73e2f8f..55a8ed08734d 100644
--- a/science/kalzium/distinfo
+++ b/science/kalzium/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1749036942
-SHA256 (KDE/release-service/25.04.2/kalzium-25.04.2.tar.xz) = 267ae25fd41fc03a386e432d56a7ce34f9ecba4ce5c56869ad0f5d60ad44db76
-SIZE (KDE/release-service/25.04.2/kalzium-25.04.2.tar.xz) = 22661016
+TIMESTAMP = 1751381644
+SHA256 (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = d8d76ae3d123d93fe0ddf33992d7c85292ec5560b76a634f9bf2d731c2fccada
+SIZE (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = 22660296
diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile
index a5db531efc36..b14fb8f12ff0 100644
--- a/science/openbabel/Makefile
+++ b/science/openbabel/Makefile
@@ -1,6 +1,6 @@
PORTNAME= openbabel
DISTVERSION= 3-1-1-178
-PORTREVISION= 4
+PORTREVISION= 5
#DISTVERSIONSUFFIX= -source
DISTVERSIONSUFFIX= -g2b211d6ac
CATEGORIES= science
diff --git a/science/openmodelica/Makefile b/science/openmodelica/Makefile
index cc1aaa4b5574..7b68d78286ef 100644
--- a/science/openmodelica/Makefile
+++ b/science/openmodelica/Makefile
@@ -1,6 +1,7 @@
PORTNAME= openmodelica
DISTVERSIONPREFIX= v
DISTVERSION= 1.25.1
+PORTREVISION= 1
CATEGORIES= science cad java
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
@@ -32,7 +33,7 @@ LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs \
libcurl.so:ftp/curl \
libicuuc.so:devel/icu \
libosg.so:graphics/osg \
- libuuid.so:misc/e2fsprogs-libuuid
+ libuuid.so:misc/libuuid
RUN_DEPENDS= bash:shells/bash \
gmake:devel/gmake
diff --git a/science/orthanc/Makefile b/science/orthanc/Makefile
index 427f97a463fd..515e49a5a4fb 100644
--- a/science/orthanc/Makefile
+++ b/science/orthanc/Makefile
@@ -1,6 +1,6 @@
PORTNAME= orthanc
DISTVERSION= 1.12.6
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://orthanc.uclouvain.be/downloads/sources/orthanc/
DISTNAME= Orthanc-${PORTVERSION}
@@ -25,7 +25,7 @@ LIB_DEPENDS= libboost_atomic.so:devel/boost-libs \
libprotobuf.so:devel/protobuf \
libpugixml.so:textproc/pugixml \
libtiff.so:graphics/tiff \
- libuuid.so:misc/e2fsprogs-libuuid
+ libuuid.so:misc/libuuid
USES= cmake gnome iconv jpeg lua python:build sqlite ssl
USE_GNOME= libxml2
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index 53ae109ad5bb..4e69796ed499 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -1,6 +1,6 @@
PORTNAME= paraview
DISTVERSION= ${PARAVIEW_VER}.3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science graphics
MASTER_SITES= http://www.paraview.org/files/v${PARAVIEW_VER}/
DISTNAME= ParaView-v${PORTVERSION}
diff --git a/science/py-eccodes/Makefile b/science/py-eccodes/Makefile
index d76393714ea3..5f7093dce593 100644
--- a/science/py-eccodes/Makefile
+++ b/science/py-eccodes/Makefile
@@ -1,5 +1,5 @@
PORTNAME= eccodes
-PORTVERSION= 2.41.0
+PORTVERSION= 2.42.0
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-eccodes/distinfo b/science/py-eccodes/distinfo
index 6c4b4266664a..21954c2072d6 100644
--- a/science/py-eccodes/distinfo
+++ b/science/py-eccodes/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1745177940
-SHA256 (eccodes-2.41.0.tar.gz) = f3e209f5da5a7fcee4942295db4ee7888e077bd2e0342e6170ec5fedb9b29840
-SIZE (eccodes-2.41.0.tar.gz) = 2268345
+TIMESTAMP = 1750954222
+SHA256 (eccodes-2.42.0.tar.gz) = 0abb2bc6c6f4e83749c4e9c313d5428c62b15dc6c5b47d2807943e3a5ffd5291
+SIZE (eccodes-2.42.0.tar.gz) = 2268756
diff --git a/science/py-pymol/Makefile b/science/py-pymol/Makefile
index 35810048bbd2..a5d83df2c640 100644
--- a/science/py-pymol/Makefile
+++ b/science/py-pymol/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pymol
DISTVERSIONPREFIX= v
DISTVERSION= 3.0.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile
index 34dfa65c6d12..e28c1d3cd27c 100644
--- a/science/py-qiskit/Makefile
+++ b/science/py-qiskit/Makefile
@@ -1,6 +1,6 @@
PORTNAME= qiskit
DISTVERSION= 2.0.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/qbox/Makefile b/science/qbox/Makefile
index 6eaf55eb80d3..6c76aa7980fe 100644
--- a/science/qbox/Makefile
+++ b/science/qbox/Makefile
@@ -1,6 +1,7 @@
PORTNAME= qbox
DISTVERSIONPREFIX= rel
DISTVERSION= 1_78_4
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -16,7 +17,7 @@ LIB_DEPENDS= libblas.so:math/blas \
liblapack.so:math/lapack \
libmpicxx.so:net/mpich \
libscalapack.so:math/scalapack \
- libuuid.so:misc/e2fsprogs-libuuid \
+ libuuid.so:misc/libuuid \
libxerces-c.so:textproc/xerces-c3
USES= compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags
diff --git a/science/qmcpack/Makefile b/science/qmcpack/Makefile
index 231e826dbf21..e53ffec135e8 100644
--- a/science/qmcpack/Makefile
+++ b/science/qmcpack/Makefile
@@ -1,7 +1,7 @@
PORTNAME= qmcpack
DISTVERSIONPREFIX= v
DISTVERSION= 4.0.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/salome-kernel/Makefile b/science/salome-kernel/Makefile
index c3e361b22c53..490e715aab60 100644
--- a/science/salome-kernel/Makefile
+++ b/science/salome-kernel/Makefile
@@ -11,6 +11,9 @@ WWW= https://www.salome-platform.org/
LICENSE= LGPL21
LICENSE_FILE= ${WRKSRC}/COPYING
+DEPRECATED= Depends on expired science/salome-configuration
+EXPIRATION_DATE=2025-09-30
+
FETCH_DEPENDS= git:devel/git
PY_DEPENDS= ${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}omniorb>0:devel/py-omniorb \
diff --git a/science/step/distinfo b/science/step/distinfo
index 1b4693330a8d..d0003f376b70 100644
--- a/science/step/distinfo
+++ b/science/step/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1749036945
-SHA256 (KDE/release-service/25.04.2/step-25.04.2.tar.xz) = 38a6e5eaf9dd87e5a21a16235ac31026b057b09eae503150769f5170dbc9407e
-SIZE (KDE/release-service/25.04.2/step-25.04.2.tar.xz) = 988436
+TIMESTAMP = 1751381646
+SHA256 (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 0aa86e2dd0bebbd9da8b8b77d0da3cd924e25be7084accaf11850d51857fba3e
+SIZE (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 987244
generated by cgit v1.2.3 (git 2.25.1) at 2025-07-04 03:07:03 +0000