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-rw-r--r--science/cdo/Makefile2
-rw-r--r--science/clhep/Makefile11
-rw-r--r--science/clhep/distinfo6
-rw-r--r--science/csvtk/Makefile3
-rw-r--r--science/csvtk/distinfo14
-rw-r--r--science/libkml/Makefile2
-rw-r--r--science/netcdf-cxx/Makefile2
-rw-r--r--science/netcdf-fortran/Makefile2
-rw-r--r--science/netcdf/Makefile2
-rw-r--r--science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp16
-rw-r--r--science/orthanc-postgresql/Makefile3
-rw-r--r--science/orthanc-postgresql/distinfo6
-rw-r--r--science/packmol/Makefile2
-rw-r--r--science/packmol/distinfo6
-rw-r--r--science/paraview/files/patch-qt-6.10.1-fix77
-rw-r--r--science/pnetcdf/Makefile2
-rw-r--r--science/py-pyked/Makefile4
-rw-r--r--science/py-qiskit/Makefile2
-rw-r--r--science/qt6-quick3dphysics/distinfo6
-rw-r--r--science/qt6-quick3dphysics/pkg-plist4
20 files changed, 133 insertions, 39 deletions
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index d1bdbc708e93..ee01054d2e79 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -12,7 +12,7 @@ WWW= https://code.mpimet.mpg.de/projects/cdo
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
-USES= compiler:c++20-lang gmake libtool localbase pathfix python:build
+USES= compiler:c++20-lang gmake libtool localbase python:build
CONFIGURE_ARGS= --disable-data \
--disable-extra \
diff --git a/science/clhep/Makefile b/science/clhep/Makefile
index 76313e29ad47..d4e6b0527c74 100644
--- a/science/clhep/Makefile
+++ b/science/clhep/Makefile
@@ -1,5 +1,5 @@
PORTNAME= clhep
-PORTVERSION= 2.4.7.1
+DISTVERSION= 2.4.7.2
CATEGORIES= science math
MASTER_SITES= https://proj-clhep.web.cern.ch/proj-clhep/dist1/
@@ -11,12 +11,15 @@ LICENSE= GPLv3 LGPL3
LICENSE_COMB= multi
USES= cmake:testing compiler:c++11-lang perl5 tar:tgz
+USE_GITLAB= yes
+GL_SITE= https://gitlab.cern.ch
+GL_ACCOUNT= ${PORTNAME:tu}
+GL_PROJECT= ${PORTNAME:tu}
+GL_TAGNAME= ${PORTNAME:tu}_${DISTVERSION:S/./_/g}
USE_LDCONFIG= yes
USE_PERL5= build
-WRKSRC= ${WRKDIR}/${PORTVERSION}/${PORTNAME:tu}
-
-PLIST_SUB= VERSION="${PORTVERSION}"
+PLIST_SUB= VERSION="${DISTVERSION}"
post-patch:
@${REINPLACE_CMD} -e \
diff --git a/science/clhep/distinfo b/science/clhep/distinfo
index 86f0e68bf63f..0a292e0dcbab 100644
--- a/science/clhep/distinfo
+++ b/science/clhep/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1697274749
-SHA256 (clhep-2.4.7.1.tgz) = 1c8304a7772ac6b99195f1300378c6e3ddf4ad07c85d64a04505652abb8a55f9
-SIZE (clhep-2.4.7.1.tgz) = 1229169
+TIMESTAMP = 1765961293
+SHA256 (CLHEP-CLHEP_2_4_7_2.tar.bz2) = 41fb3d045eac52d8abca3e6614dda058dfb1f78e3873fe3fe4610d552f74f6f7
+SIZE (CLHEP-CLHEP_2_4_7_2.tar.bz2) = 953450
diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile
index e12178ad5ce0..71918dddfcaa 100644
--- a/science/csvtk/Makefile
+++ b/science/csvtk/Makefile
@@ -1,7 +1,6 @@
PORTNAME= csvtk
DISTVERSIONPREFIX= v
-DISTVERSION= 0.35.0
-PORTREVISION= 2
+DISTVERSION= 0.36.0
CATEGORIES= science
MAINTAINER= jwb@FreeBSD.org
diff --git a/science/csvtk/distinfo b/science/csvtk/distinfo
index f96f90ae121a..d08cea3d58ea 100644
--- a/science/csvtk/distinfo
+++ b/science/csvtk/distinfo
@@ -1,7 +1,7 @@
-TIMESTAMP = 1761745541
-SHA256 (go/science_csvtk/csvtk-v0.35.0/v0.35.0.mod) = eeb9915dc3bd2695d637683b3da2a00d5c2c24bf995b0476a7bfa44a35916d4a
-SIZE (go/science_csvtk/csvtk-v0.35.0/v0.35.0.mod) = 2595
-SHA256 (go/science_csvtk/csvtk-v0.35.0/v0.35.0.zip) = bb258e5ac8ce551063cf8c818be75ab055458c34dacf2e911783c2040017e1e8
-SIZE (go/science_csvtk/csvtk-v0.35.0/v0.35.0.zip) = 2659159
-SHA256 (go/science_csvtk/csvtk-v0.35.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54
-SIZE (go/science_csvtk/csvtk-v0.35.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234
+TIMESTAMP = 1766073314
+SHA256 (go/science_csvtk/csvtk-v0.36.0/v0.36.0.mod) = 56ea275fd443212776ac029af59e8ba5054e3c84a143c89f57e566acae6ebfc0
+SIZE (go/science_csvtk/csvtk-v0.36.0/v0.36.0.mod) = 2595
+SHA256 (go/science_csvtk/csvtk-v0.36.0/v0.36.0.zip) = 4149c91353a96d8aeecdd07f710aab7c8535855f37d001227c73a1538658d479
+SIZE (go/science_csvtk/csvtk-v0.36.0/v0.36.0.zip) = 2661444
+SHA256 (go/science_csvtk/csvtk-v0.36.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54
+SIZE (go/science_csvtk/csvtk-v0.36.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234
diff --git a/science/libkml/Makefile b/science/libkml/Makefile
index 4f393b67245b..2e708f9c4b29 100644
--- a/science/libkml/Makefile
+++ b/science/libkml/Makefile
@@ -14,7 +14,7 @@ LIB_DEPENDS= libboost_thread.so:devel/boost-libs \
libexpat.so:textproc/expat2 \
liburiparser.so:net/uriparser
-USES= cmake compiler:c++11-lang minizip pathfix
+USES= cmake compiler:c++11-lang minizip
CMAKE_ARGS= -DEXPAT_LIBRARY=${LOCALBASE}/lib/libexpat.so
CMAKE_OFF= BUILD_TESTING WITH_JAVA WITH_PYTHON WITH_SWIG
diff --git a/science/netcdf-cxx/Makefile b/science/netcdf-cxx/Makefile
index d8c9f9934e3c..c27657275990 100644
--- a/science/netcdf-cxx/Makefile
+++ b/science/netcdf-cxx/Makefile
@@ -18,7 +18,7 @@ LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell
LIB_DEPENDS= libnetcdf.so:science/netcdf
-USES= libtool localbase pathfix
+USES= libtool localbase
CPPFLAGS+= -fPIC -DPIC
GNU_CONFIGURE= yes
diff --git a/science/netcdf-fortran/Makefile b/science/netcdf-fortran/Makefile
index ecb9a52e7e52..b3f9cb96f91b 100644
--- a/science/netcdf-fortran/Makefile
+++ b/science/netcdf-fortran/Makefile
@@ -17,7 +17,7 @@ LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell
BUILD_DEPENDS= netcdf>=4.9.0:science/netcdf
LIB_DEPENDS= libnetcdf.so:science/netcdf
-USES= fortran gmake libtool localbase makeinfo pathfix
+USES= fortran gmake libtool localbase makeinfo
CPPFLAGS+= -fPIC -DPIC -DgFortran
GNU_CONFIGURE= yes
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index c241bd9f7d5a..0fe19a3a0cd0 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -17,7 +17,7 @@ LIB_DEPENDS= libcurl.so:ftp/curl \
libhdf5.so:science/hdf5 \
libzstd.so:archivers/zstd
-USES= gmake libtool localbase ncurses pathfix pkgconfig:run
+USES= gmake libtool localbase ncurses pkgconfig:run
CONFIGURE_ARGS= --disable-filter-testing --disable-libxml2 \
--enable-byterange --enable-curl --enable-dap --enable-hdf5 --enable-logging
diff --git a/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp b/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp
new file mode 100644
index 000000000000..c0ec4a17af5a
--- /dev/null
+++ b/science/openmodelica/files/patch-OMEdit_OMEditLIB_Modeling_ModelWidgetContainer.cpp
@@ -0,0 +1,16 @@
+Fix build with Qt 6.10.1. The QString::arg() method no longer accepts
+implicit conversions. [1]
+
+[1] https://doc.qt.io/qt-6/qstring.html#arg-2
+
+--- OMEdit/OMEditLIB/Modeling/ModelWidgetContainer.cpp.orig 2025-11-24 16:18:03 UTC
++++ OMEdit/OMEditLIB/Modeling/ModelWidgetContainer.cpp
+@@ -3943,7 +3943,7 @@ void GraphicsView::getCoordinateSystemAndGraphics(QStr
+ }
+ // add the initial scale
+ if (mCoordinateSystem.hasInitialScale()) {
+- coOrdinateSystemList.append(QString("initialScale=%1").arg(mCoordinateSystem.getInitialScale()));
++ coOrdinateSystemList.append(QString("initialScale=%1").arg(static_cast<int>(mCoordinateSystem.getInitialScale())));
+ }
+ // add the grid
+ if (mCoordinateSystem.hasGrid()) {
diff --git a/science/orthanc-postgresql/Makefile b/science/orthanc-postgresql/Makefile
index 0c3a2281fe46..efdb2d2eb7c9 100644
--- a/science/orthanc-postgresql/Makefile
+++ b/science/orthanc-postgresql/Makefile
@@ -1,6 +1,5 @@
PORTNAME= orthanc-postgresql
-DISTVERSION= 9.0
-PORTREVISION= 1
+DISTVERSION= 10.0
CATEGORIES= science
MASTER_SITES= https://orthanc.uclouvain.be/downloads/sources/orthanc-postgresql/:pgsql \
https://orthanc.uclouvain.be/downloads/sources/orthanc/:orthanc \
diff --git a/science/orthanc-postgresql/distinfo b/science/orthanc-postgresql/distinfo
index eb471a05a907..ad08b10220c0 100644
--- a/science/orthanc-postgresql/distinfo
+++ b/science/orthanc-postgresql/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1764254021
-SHA256 (orthanc/OrthancPostgreSQL-9.0.tar.gz) = 92c3fde9c3baad343a4de7090759274a733ac28af06037538dbf70f0ee50cd75
-SIZE (orthanc/OrthancPostgreSQL-9.0.tar.gz) = 790691
+TIMESTAMP = 1765988345
+SHA256 (orthanc/OrthancPostgreSQL-10.0.tar.gz) = 64c6dd8055bb4aa6055be86a5beedb96cfa974103343f5dc26d219d3d28065b8
+SIZE (orthanc/OrthancPostgreSQL-10.0.tar.gz) = 869242
SHA256 (orthanc/Orthanc-1.12.10.tar.gz) = b5d6934d123182fb2186cd54ef7f203be06b544afb03df67b0c64ad68d6c9286
SIZE (orthanc/Orthanc-1.12.10.tar.gz) = 2192892
SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
diff --git a/science/packmol/Makefile b/science/packmol/Makefile
index aa9368fabd48..3d175e6dde2b 100644
--- a/science/packmol/Makefile
+++ b/science/packmol/Makefile
@@ -1,6 +1,6 @@
PORTNAME= packmol
DISTVERSIONPREFIX= v
-DISTVERSION= 21.1.3
+DISTVERSION= 21.1.4
CATEGORIES= science
MAINTAINER= eduardo@FreeBSD.org
diff --git a/science/packmol/distinfo b/science/packmol/distinfo
index 04a34d95fab4..440d62f0dbb9 100644
--- a/science/packmol/distinfo
+++ b/science/packmol/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1763590917
-SHA256 (m3g-packmol-v21.1.3_GH0.tar.gz) = 21a22e4e3f183e2c594c2e1d85cd7c16a95a8c609b36fc28d653f6c2c2d54c0c
-SIZE (m3g-packmol-v21.1.3_GH0.tar.gz) = 637489
+TIMESTAMP = 1766090725
+SHA256 (m3g-packmol-v21.1.4_GH0.tar.gz) = 62e0bf9a5d0671ff1f03d57671c8bb91fd16790fcc07f0e68f1829b1f34fae48
+SIZE (m3g-packmol-v21.1.4_GH0.tar.gz) = 637997
diff --git a/science/paraview/files/patch-qt-6.10.1-fix b/science/paraview/files/patch-qt-6.10.1-fix
new file mode 100644
index 000000000000..5d3d326bca0f
--- /dev/null
+++ b/science/paraview/files/patch-qt-6.10.1-fix
@@ -0,0 +1,77 @@
+Backport of upstream patches to fix build with Qt 6.10.1.
+
+https://gitlab.kitware.com/paraview/paraview/-/commit/cd7e633df299c29e8e76c34df83d8c67dfb386a1
+https://gitlab.kitware.com/paraview/qttesting/-/commit/9ba0a2104840ac5ddf0b73a36d72b282bf6b03d9
+
+--- Qt/Core/pqFlatTreeViewEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC
++++ Qt/Core/pqFlatTreeViewEventTranslator.cxx
+@@ -73,8 +73,8 @@ bool pqFlatTreeViewEventTranslator::translateEvent(QOb
+
+ QString info = QString("%1,%2,%3,%4,%5,%6")
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers())
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers()))
+ .arg(relPt.x())
+ .arg(relPt.y())
+ .arg(idxStr);
+--- Qt/Core/pqQVTKWidgetEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC
++++ Qt/Core/pqQVTKWidgetEventTranslator.cxx
+@@ -85,8 +85,8 @@ bool pqQVTKWidgetEventTranslator::translateEvent(
+ .arg(normalized_x)
+ .arg(normalized_y)
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers()));
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers())));
+ }
+ return true;
+ break;
+@@ -108,15 +108,15 @@ bool pqQVTKWidgetEventTranslator::translateEvent(
+ .arg(normalized_x)
+ .arg(normalized_y)
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers()));
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers())));
+ Q_EMIT recordEvent(widget, "mouseRelease",
+ QString("(%1,%2,%3,%4,%5)")
+ .arg(normalized_x)
+ .arg(normalized_y)
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers()));
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers())));
+ }
+ return true;
+ break;
+--- ThirdParty/QtTesting/vtkqttesting/pqAbstractItemViewEventTranslator.cxx.orig 2025-03-31 14:04:52 UTC
++++ ThirdParty/QtTesting/vtkqttesting/pqAbstractItemViewEventTranslator.cxx
+@@ -118,8 +118,8 @@ bool pqAbstractItemViewEventTranslator::translateEvent
+
+ QString info = QString("%1,%2,%3,%4,%5,%6")
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers())
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers()))
+ .arg(relPt.x())
+ .arg(relPt.y())
+ .arg(idxStr);
+--- ThirdParty/QtTesting/vtkqttesting/pqBasicWidgetEventTranslator.cxx.orig 2025-12-05 14:13:11 UTC
++++ ThirdParty/QtTesting/vtkqttesting/pqBasicWidgetEventTranslator.cxx
+@@ -78,8 +78,8 @@ bool pqBasicWidgetEventTranslator::translateEvent(
+ QMouseEvent* mouseEvent = static_cast<QMouseEvent*>(event);
+ QString info = QString("%1,%2,%3,%4,%5")
+ .arg(mouseEvent->button())
+- .arg(mouseEvent->buttons())
+- .arg(mouseEvent->modifiers())
++ .arg(static_cast<int>(mouseEvent->buttons()))
++ .arg(static_cast<int>(mouseEvent->modifiers()))
+ .arg(mouseEvent->x())
+ .arg(mouseEvent->y());
+
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index e131d647de3b..8f20c0b5240c 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -14,7 +14,7 @@ LICENSE_NAME= NetCDF License
LICENSE_FILE= ${WRKSRC}/COPYRIGHT
LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell
-USES= fortran gmake libtool mpi:${FLAVOR} pathfix perl5
+USES= fortran gmake libtool mpi:${FLAVOR} perl5
USE_PERL5= build
CFLAGS+= -fPIC
diff --git a/science/py-pyked/Makefile b/science/py-pyked/Makefile
index 44c97100f135..52b4ef9ea5f8 100644
--- a/science/py-pyked/Makefile
+++ b/science/py-pyked/Makefile
@@ -2,7 +2,7 @@ PORTNAME= pyked
DISTVERSIONPREFIX= v
DISTVERSION= 0.4.1-16
DISTVERSIONSUFFIX= -gfcccaf8
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
#MASTER_SITES= PYPI 0.4.1 is broken there
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -15,7 +15,7 @@ LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
RUN_DEPENDS= ${PYNUMPY} \
- ${PYTHON_PKGNAMEPREFIX}Cerberus>=1.0.0:devel/py-cerberus@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}cerberus>=1.0.0:devel/py-cerberus@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}habanero>=0.6.0:www/py-habanero@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pint>=0.7.2:devel/py-pint@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}uncertainties>=3.0.1:math/py-uncertainties@${PY_FLAVOR} \
diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile
index 26690ce9ba2e..6db6bccf7ac2 100644
--- a/science/py-qiskit/Makefile
+++ b/science/py-qiskit/Makefile
@@ -1,6 +1,6 @@
PORTNAME= qiskit
DISTVERSION= 2.2.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/qt6-quick3dphysics/distinfo b/science/qt6-quick3dphysics/distinfo
index a1a299cb31b7..a5ac11a7e2a9 100644
--- a/science/qt6-quick3dphysics/distinfo
+++ b/science/qt6-quick3dphysics/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1759303916
-SHA256 (KDE/Qt/6.9.3/qtquick3dphysics-everywhere-src-6.9.3.tar.xz) = dcd7b22d745d249eb602c5d4d8af8a8e9d11217ccb42b3dd611bb047153b5a6e
-SIZE (KDE/Qt/6.9.3/qtquick3dphysics-everywhere-src-6.9.3.tar.xz) = 4668392
+TIMESTAMP = 1763965268
+SHA256 (KDE/Qt/6.10.1/qtquick3dphysics-everywhere-src-6.10.1.tar.xz) = d973847df1be6ee711e771df923537fb62fcac5bf57100f2ebc6f7742c8d2fee
+SIZE (KDE/Qt/6.10.1/qtquick3dphysics-everywhere-src-6.10.1.tar.xz) = 4669412
diff --git a/science/qt6-quick3dphysics/pkg-plist b/science/qt6-quick3dphysics/pkg-plist
index 769b63cf2550..a29926d0318f 100644
--- a/science/qt6-quick3dphysics/pkg-plist
+++ b/science/qt6-quick3dphysics/pkg-plist
@@ -107,8 +107,8 @@ lib/cmake/Qt6Quick3DPhysicsPrivate/Qt6Quick3DPhysicsPrivateVersionlessTargets.cm
%%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so
%%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so.6
%%QT_LIBDIR%%/libQt6Quick3DPhysicsHelpers.so.%%FULLVER%%
-%%QT_LIBDIR%%/metatypes/qt6quick3dphysics_%%CMAKE_BUILD_TYPE%%_metatypes.json
-%%QT_LIBDIR%%/metatypes/qt6quick3dphysicshelpers_%%CMAKE_BUILD_TYPE%%_metatypes.json
+%%QT_LIBDIR%%/metatypes/qt6quick3dphysics_metatypes.json
+%%QT_LIBDIR%%/metatypes/qt6quick3dphysicshelpers_metatypes.json
%%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysics.pri
%%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysics_private.pri
%%QT_MKSPECDIR%%/modules/qt_lib_quick3dphysicshelpers.pri
generated by cgit v1.2.3 (git 2.25.1) at 2025-12-19 07:54:56 +0000