16 files changed, 31 insertions, 116 deletions

diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 75f332286234..f11586616811 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -1,7 +1,7 @@
 PORTNAME=	InsightToolkit
 DISTVERSIONPREFIX=	v
 DISTVERSION=	5.3.0
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	science biology
 MASTER_SITES=	https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${DISTVERSION}/:data
 DISTFILES=	InsightData-${DISTVERSION}.tar.gz:data
diff --git a/science/InsightToolkit/Makefile.remote_modules b/science/InsightToolkit/Makefile.remote_modules
index ed3659eabd22..ac598e13d5cf 100644
--- a/science/InsightToolkit/Makefile.remote_modules
+++ b/science/InsightToolkit/Makefile.remote_modules
@@ -79,7 +79,7 @@ CMAKE_ON+=Module_IOScanco
 CMAKE_ON+=Module_IOTransformDCMTK
 CMAKE_OFF+=Module_IsotropicWavelets # cmake fails: No such module: "ITKImageIO"
 CMAKE_ON+=Module_LabelErodeDilate
-CMAKE_ON+=Module_LesionSizingToolkit
+#CMAKE_ON+=Module_LesionSizingToolkit
 CMAKE_ON+=Module_itkMGHImageIO
 CMAKE_ON+=Module_MeshNoise
 CMAKE_ON+=Module_MeshToPolyData
diff --git a/science/InsightToolkit/pkg-plist b/science/InsightToolkit/pkg-plist
index b2301e5560a8..8f1a4fb86c8f 100644
--- a/science/InsightToolkit/pkg-plist
+++ b/science/InsightToolkit/pkg-plist
@@ -148,12 +148,10 @@ include/ITK-%%ITK_VER%%/ITKTransformExport.h
 include/ITK-%%ITK_VER%%/ITKVTKExport.h
 include/ITK-%%ITK_VER%%/ITKVideoCoreExport.h
 include/ITK-%%ITK_VER%%/ITKVideoIOExport.h
-include/ITK-%%ITK_VER%%/ITKVtkGlueExport.h
 include/ITK-%%ITK_VER%%/ITKWatershedsExport.h
 include/ITK-%%ITK_VER%%/MinimalPathExtractionExport.h
 include/ITK-%%ITK_VER%%/MontageExport.h
 include/ITK-%%ITK_VER%%/NrrdIO.h
-include/ITK-%%ITK_VER%%/QuickView.h
 include/ITK-%%ITK_VER%%/RTKExport.h
 include/ITK-%%ITK_VER%%/SimpleITKFiltersExport.h
 include/ITK-%%ITK_VER%%/VNLIterativeSparseSolverTraits.h
@@ -413,8 +411,6 @@ include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter.h
 include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter3D.h
 include/ITK-%%ITK_VER%%/itkBinaryThinningImageFilter3D.hxx
-include/ITK-%%ITK_VER%%/itkBinaryThresholdFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkBinaryThresholdFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFilter.h
 include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkBinaryThresholdImageFunction.h
@@ -477,14 +473,6 @@ include/ITK-%%ITK_VER%%/itkCSVNumericObjectFileWriter.hxx
 include/ITK-%%ITK_VER%%/itkCacheableScalarFunction.h
 include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionImageFilter.h
 include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionRecursiveGaussianImageFilter.h
-include/ITK-%%ITK_VER%%/itkCannyEdgeDetectionRecursiveGaussianImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceAdvectionFieldFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceAdvectionFieldFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesDistanceFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkCannyEdgesFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkCannyEdgesFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetFunction.h
 include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkCannySegmentationLevelSetImageFilter.h
@@ -579,8 +567,6 @@ include/ITK-%%ITK_VER%%/itkConceptChecking.h
 include/ITK-%%ITK_VER%%/itkConditionalConstIterator.h
 include/ITK-%%ITK_VER%%/itkConfidenceConnectedImageFilter.h
 include/ITK-%%ITK_VER%%/itkConfidenceConnectedImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkConfidenceConnectedSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkConfidenceConnectedSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkConfigure.h
 include/ITK-%%ITK_VER%%/itkConformalFlatteningMeshFilter.h
 include/ITK-%%ITK_VER%%/itkConformalFlatteningMeshFilter.hxx
@@ -599,8 +585,6 @@ include/ITK-%%ITK_VER%%/itkConnectedRegionsMeshFilter.h
 include/ITK-%%ITK_VER%%/itkConnectedRegionsMeshFilter.hxx
 include/ITK-%%ITK_VER%%/itkConnectedThresholdImageFilter.h
 include/ITK-%%ITK_VER%%/itkConnectedThresholdImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkConnectedThresholdSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkConnectedThresholdSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkConstNeighborhoodIterator.h
 include/ITK-%%ITK_VER%%/itkConstNeighborhoodIterator.hxx
 include/ITK-%%ITK_VER%%/itkConstNeighborhoodIteratorWithOnlyIndex.h
@@ -765,9 +749,6 @@ include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureImageFilter.h
 include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureParameterEstimationFilter.h
 include/ITK-%%ITK_VER%%/itkDescoteauxEigenToMeasureParameterEstimationFilter.hxx
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkDescoteauxSheetnessImageFilter.h
 include/ITK-%%ITK_VER%%/itkDiffeomorphicDemonsRegistrationFilter.h
 include/ITK-%%ITK_VER%%/itkDiffeomorphicDemonsRegistrationFilter.hxx
 include/ITK-%%ITK_VER%%/itkDifferenceOfGaussiansGradientImageFilter.h
@@ -927,10 +908,6 @@ include/ITK-%%ITK_VER%%/itkFastChamferDistanceImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkFastGrowCut.h
 include/ITK-%%ITK_VER%%/itkFastGrowCut.hxx
 include/ITK-%%ITK_VER%%/itkFastIncrementalBinaryDilateImageFilter.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndGeodesicActiveContourLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndGeodesicActiveContourLevelSetSegmentationModule.hxx
-include/ITK-%%ITK_VER%%/itkFastMarchingAndShapeDetectionLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingAndShapeDetectionLevelSetSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkFastMarchingBase.h
 include/ITK-%%ITK_VER%%/itkFastMarchingBase.hxx
 include/ITK-%%ITK_VER%%/itkFastMarchingExtensionImageFilter.h
@@ -947,8 +924,6 @@ include/ITK-%%ITK_VER%%/itkFastMarchingNumberOfElementsStoppingCriterion.h
 include/ITK-%%ITK_VER%%/itkFastMarchingQuadEdgeMeshFilterBase.h
 include/ITK-%%ITK_VER%%/itkFastMarchingQuadEdgeMeshFilterBase.hxx
 include/ITK-%%ITK_VER%%/itkFastMarchingReachedTargetNodesStoppingCriterion.h
-include/ITK-%%ITK_VER%%/itkFastMarchingSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkFastMarchingSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkFastMarchingStoppingCriterionBase.h
 include/ITK-%%ITK_VER%%/itkFastMarchingThresholdStoppingCriterion.h
 include/ITK-%%ITK_VER%%/itkFastMarchingTraits.h
@@ -960,10 +935,6 @@ include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFilter.h
 include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFilter.hxx
 include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFunction.h
 include/ITK-%%ITK_VER%%/itkFastSymmetricForcesDemonsRegistrationFunction.hxx
-include/ITK-%%ITK_VER%%/itkFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkFeatureAggregator.hxx
-include/ITK-%%ITK_VER%%/itkFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkFileListVideoIO.h
 include/ITK-%%ITK_VER%%/itkFileListVideoIOFactory.h
 include/ITK-%%ITK_VER%%/itkFileOutputWindow.h
@@ -1012,9 +983,6 @@ include/ITK-%%ITK_VER%%/itkFrameAverageVideoFilter.h
 include/ITK-%%ITK_VER%%/itkFrameAverageVideoFilter.hxx
 include/ITK-%%ITK_VER%%/itkFrameDifferenceVideoFilter.h
 include/ITK-%%ITK_VER%%/itkFrameDifferenceVideoFilter.hxx
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkFrangiTubularnessImageFilter.h
 include/ITK-%%ITK_VER%%/itkFreeSurferAsciiMeshIO.h
 include/ITK-%%ITK_VER%%/itkFreeSurferAsciiMeshIOFactory.h
 include/ITK-%%ITK_VER%%/itkFreeSurferBinaryMeshIO.h
@@ -1144,8 +1112,6 @@ include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetFunction.h
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetImageFilter.h
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkGeodesicActiveContourLevelSetSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetFunction.h
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkGeodesicActiveContourShapePriorLevelSetImageFilter.h
@@ -1179,8 +1145,6 @@ include/ITK-%%ITK_VER%%/itkGradientMagnitudeImageFilter.h
 include/ITK-%%ITK_VER%%/itkGradientMagnitudeImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkGradientMagnitudeRecursiveGaussianImageFilter.h
 include/ITK-%%ITK_VER%%/itkGradientMagnitudeRecursiveGaussianImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGradientMagnitudeSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkGradientMagnitudeSigmoidFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkGradientNDAnisotropicDiffusionFunction.h
 include/ITK-%%ITK_VER%%/itkGradientNDAnisotropicDiffusionFunction.hxx
 include/ITK-%%ITK_VER%%/itkGradientRecursiveGaussianImageFilter.h
@@ -1207,8 +1171,6 @@ include/ITK-%%ITK_VER%%/itkGrayscaleGeodesicErodeImageFilter.h
 include/ITK-%%ITK_VER%%/itkGrayscaleGeodesicErodeImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkGrayscaleGrindPeakImageFilter.h
 include/ITK-%%ITK_VER%%/itkGrayscaleGrindPeakImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkGrayscaleImageSegmentationVolumeEstimator.h
-include/ITK-%%ITK_VER%%/itkGrayscaleImageSegmentationVolumeEstimator.hxx
 include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalClosingImageFilter.h
 include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalClosingImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkGrayscaleMorphologicalOpeningImageFilter.h
@@ -1466,8 +1428,6 @@ include/ITK-%%ITK_VER%%/itkImageToSpatialObjectMetric.h
 include/ITK-%%ITK_VER%%/itkImageToSpatialObjectMetric.hxx
 include/ITK-%%ITK_VER%%/itkImageToSpatialObjectRegistrationMethod.h
 include/ITK-%%ITK_VER%%/itkImageToSpatialObjectRegistrationMethod.hxx
-include/ITK-%%ITK_VER%%/itkImageToVTKImageFilter.h
-include/ITK-%%ITK_VER%%/itkImageToVTKImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkImageToVideoFilter.h
 include/ITK-%%ITK_VER%%/itkImageToVideoFilter.hxx
 include/ITK-%%ITK_VER%%/itkImageVectorOptimizerParametersHelper.h
@@ -1532,10 +1492,6 @@ include/ITK-%%ITK_VER%%/itkIsolatedWatershedImageFilter.h
 include/ITK-%%ITK_VER%%/itkIsolatedWatershedImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkIsotropicFourthOrderLevelSetImageFilter.h
 include/ITK-%%ITK_VER%%/itkIsotropicFourthOrderLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkIsotropicResampler.h
-include/ITK-%%ITK_VER%%/itkIsotropicResampler.hxx
-include/ITK-%%ITK_VER%%/itkIsotropicResamplerImageFilter.h
-include/ITK-%%ITK_VER%%/itkIsotropicResamplerImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkIterateNeighborhoodOptimizer.h
 include/ITK-%%ITK_VER%%/itkIterationReporter.h
 include/ITK-%%ITK_VER%%/itkIterativeDeconvolutionImageFilter.h
@@ -1686,8 +1642,6 @@ include/ITK-%%ITK_VER%%/itkLandmarkDisplacementFieldSource.h
 include/ITK-%%ITK_VER%%/itkLandmarkDisplacementFieldSource.hxx
 include/ITK-%%ITK_VER%%/itkLandmarkSpatialObject.h
 include/ITK-%%ITK_VER%%/itkLandmarkSpatialObject.hxx
-include/ITK-%%ITK_VER%%/itkLandmarksReader.h
-include/ITK-%%ITK_VER%%/itkLandmarksReader.hxx
 include/ITK-%%ITK_VER%%/itkLandweberDeconvolutionImageFilter.h
 include/ITK-%%ITK_VER%%/itkLandweberDeconvolutionImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkLaplacianDeformationQuadEdgeMeshFilter.h
@@ -1708,10 +1662,6 @@ include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.h
 include/ITK-%%ITK_VER%%/itkLaplacianSegmentationLevelSetImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.h
 include/ITK-%%ITK_VER%%/itkLaplacianSharpeningImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkLesionSegmentationImageFilter8.h
-include/ITK-%%ITK_VER%%/itkLesionSegmentationImageFilter8.hxx
-include/ITK-%%ITK_VER%%/itkLesionSegmentationMethod.h
-include/ITK-%%ITK_VER%%/itkLesionSegmentationMethod.hxx
 include/ITK-%%ITK_VER%%/itkLevelSet.h
 include/ITK-%%ITK_VER%%/itkLevelSetBase.h
 include/ITK-%%ITK_VER%%/itkLevelSetBase.hxx
@@ -1807,7 +1757,6 @@ include/ITK-%%ITK_VER%%/itkLinearInterpolateImageFunction.h
 include/ITK-%%ITK_VER%%/itkLinearInterpolateImageFunction.hxx
 include/ITK-%%ITK_VER%%/itkListSample.h
 include/ITK-%%ITK_VER%%/itkListSample.hxx
-include/ITK-%%ITK_VER%%/itkLocalStructureImageFilter.h
 include/ITK-%%ITK_VER%%/itkLog10ImageAdaptor.h
 include/ITK-%%ITK_VER%%/itkLog10ImageFilter.h
 include/ITK-%%ITK_VER%%/itkLogGaborFreqImageSource.h
@@ -1822,8 +1771,6 @@ include/ITK-%%ITK_VER%%/itkLoggerOutput.h
 include/ITK-%%ITK_VER%%/itkLoggerThreadWrapper.h
 include/ITK-%%ITK_VER%%/itkLoggerThreadWrapper.hxx
 include/ITK-%%ITK_VER%%/itkLogicOpsFunctors.h
-include/ITK-%%ITK_VER%%/itkLungWallFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkLungWallFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkMINCImageIO.h
 include/ITK-%%ITK_VER%%/itkMINCImageIOFactory.h
 include/ITK-%%ITK_VER%%/itkMINCTransformAdapter.h
@@ -1896,8 +1843,6 @@ include/ITK-%%ITK_VER%%/itkMaximumDecisionRule.h
 include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdCalculator.h
 include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdCalculator.hxx
 include/ITK-%%ITK_VER%%/itkMaximumEntropyThresholdImageFilter.h
-include/ITK-%%ITK_VER%%/itkMaximumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkMaximumFeatureAggregator.hxx
 include/ITK-%%ITK_VER%%/itkMaximumImageFilter.h
 include/ITK-%%ITK_VER%%/itkMaximumProjectionImageFilter.h
 include/ITK-%%ITK_VER%%/itkMaximumRatioDecisionRule.h
@@ -2015,8 +1960,6 @@ include/ITK-%%ITK_VER%%/itkMinMaxCurvatureFlowImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkMiniPipelineSeparableImageFilter.h
 include/ITK-%%ITK_VER%%/itkMiniPipelineSeparableImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkMinimumDecisionRule.h
-include/ITK-%%ITK_VER%%/itkMinimumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkMinimumFeatureAggregator.hxx
 include/ITK-%%ITK_VER%%/itkMinimumImageFilter.h
 include/ITK-%%ITK_VER%%/itkMinimumMaximumImageCalculator.h
 include/ITK-%%ITK_VER%%/itkMinimumMaximumImageCalculator.hxx
@@ -2039,10 +1982,6 @@ include/ITK-%%ITK_VER%%/itkMorphologicalDistanceTransformImageFilter.h
 include/ITK-%%ITK_VER%%/itkMorphologicalDistanceTransformImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkMorphologicalGradientImageFilter.h
 include/ITK-%%ITK_VER%%/itkMorphologicalGradientImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkMorphologicalOpeningFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkMorphologicalOpeningFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkMorphologicalOpenningFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkMorphologicalOpenningFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkMorphologicalSharpeningImageFilter.h
 include/ITK-%%ITK_VER%%/itkMorphologicalSharpeningImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkMorphologicalSignedDistanceTransformImageFilter.h
@@ -2529,16 +2468,12 @@ include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionData.h
 include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionData.hxx
 include/ITK-%%ITK_VER%%/itkRegionBasedLevelSetFunctionSharedData.h
-include/ITK-%%ITK_VER%%/itkRegionCompetitionImageFilter.h
-include/ITK-%%ITK_VER%%/itkRegionCompetitionImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkRegionConstrainedSubsampler.h
 include/ITK-%%ITK_VER%%/itkRegionConstrainedSubsampler.hxx
 include/ITK-%%ITK_VER%%/itkRegionFromReferenceLabelMapFilter.h
 include/ITK-%%ITK_VER%%/itkRegionFromReferenceLabelMapFilter.hxx
 include/ITK-%%ITK_VER%%/itkRegionGrowImageFilter.h
 include/ITK-%%ITK_VER%%/itkRegionGrowImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkRegionGrowingSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkRegionGrowingSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkRegionOfInterestImageFilter.h
 include/ITK-%%ITK_VER%%/itkRegionOfInterestImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkRegionalMaximaImageFilter.h
@@ -2619,12 +2554,6 @@ include/ITK-%%ITK_VER%%/itkSampleToHistogramFilter.h
 include/ITK-%%ITK_VER%%/itkSampleToHistogramFilter.hxx
 include/ITK-%%ITK_VER%%/itkSampleToSubsampleFilter.h
 include/ITK-%%ITK_VER%%/itkSampleToSubsampleFilter.hxx
-include/ITK-%%ITK_VER%%/itkSatoLocalStructureFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoLocalStructureFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkSatoVesselnessFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoVesselnessFeatureGenerator.hxx
-include/ITK-%%ITK_VER%%/itkSatoVesselnessSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSatoVesselnessSigmoidFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkScalableAffineTransform.h
 include/ITK-%%ITK_VER%%/itkScalableAffineTransform.hxx
 include/ITK-%%ITK_VER%%/itkScalarAnisotropicDiffusionFunction.h
@@ -2677,11 +2606,7 @@ include/ITK-%%ITK_VER%%/itkSegmentationLevelSetFunction.h
 include/ITK-%%ITK_VER%%/itkSegmentationLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkSegmentationLevelSetImageFilter.h
 include/ITK-%%ITK_VER%%/itkSegmentationLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkSegmentationRegion.h
-include/ITK-%%ITK_VER%%/itkSegmentationVolumeEstimator.h
-include/ITK-%%ITK_VER%%/itkSegmentationVolumeEstimator.hxx
 include/ITK-%%ITK_VER%%/itkShanbhagThresholdCalculator.h
 include/ITK-%%ITK_VER%%/itkShanbhagThresholdCalculator.hxx
 include/ITK-%%ITK_VER%%/itkShanbhagThresholdImageFilter.h
@@ -2689,8 +2614,6 @@ include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetFunction.h
 include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetFunction.hxx
 include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetImageFilter.h
 include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkShapeDetectionLevelSetSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkShapeKeepNObjectsLabelMapFilter.h
 include/ITK-%%ITK_VER%%/itkShapeKeepNObjectsLabelMapFilter.hxx
 include/ITK-%%ITK_VER%%/itkShapeLabelMapFilter.h
@@ -2741,8 +2664,6 @@ include/ITK-%%ITK_VER%%/itkSiddonJacobsRayCastInterpolateImageFunction.h
 include/ITK-%%ITK_VER%%/itkSiddonJacobsRayCastInterpolateImageFunction.hxx
 include/ITK-%%ITK_VER%%/itkSiemensVisionImageIO.h
 include/ITK-%%ITK_VER%%/itkSiemensVisionImageIOFactory.h
-include/ITK-%%ITK_VER%%/itkSigmoidFeatureGenerator.h
-include/ITK-%%ITK_VER%%/itkSigmoidFeatureGenerator.hxx
 include/ITK-%%ITK_VER%%/itkSigmoidImageFilter.h
 include/ITK-%%ITK_VER%%/itkSignedDanielssonDistanceMapImageFilter.h
 include/ITK-%%ITK_VER%%/itkSignedDanielssonDistanceMapImageFilter.hxx
@@ -2775,8 +2696,6 @@ include/ITK-%%ITK_VER%%/itkSinRegularizedHeavisideStepFunction.h
 include/ITK-%%ITK_VER%%/itkSinRegularizedHeavisideStepFunction.hxx
 include/ITK-%%ITK_VER%%/itkSingleImageCostFunction.h
 include/ITK-%%ITK_VER%%/itkSingleImageCostFunction.hxx
-include/ITK-%%ITK_VER%%/itkSinglePhaseLevelSetSegmentationModule.h
-include/ITK-%%ITK_VER%%/itkSinglePhaseLevelSetSegmentationModule.hxx
 include/ITK-%%ITK_VER%%/itkSingleValuedCostFunction.h
 include/ITK-%%ITK_VER%%/itkSingleValuedCostFunctionv4.h
 include/ITK-%%ITK_VER%%/itkSingleValuedNonLinearOptimizer.h
@@ -3105,8 +3024,6 @@ include/ITK-%%ITK_VER%%/itkVTKImageIO.h
 include/ITK-%%ITK_VER%%/itkVTKImageIOFactory.h
 include/ITK-%%ITK_VER%%/itkVTKImageImport.h
 include/ITK-%%ITK_VER%%/itkVTKImageImport.hxx
-include/ITK-%%ITK_VER%%/itkVTKImageToImageFilter.h
-include/ITK-%%ITK_VER%%/itkVTKImageToImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkVTKPolyDataMeshIO.h
 include/ITK-%%ITK_VER%%/itkVTKPolyDataMeshIOFactory.h
 include/ITK-%%ITK_VER%%/itkVTKPolyDataReader.h
@@ -3227,8 +3144,6 @@ include/ITK-%%ITK_VER%%/itkVersorTransform.hxx
 include/ITK-%%ITK_VER%%/itkVersorTransformOptimizer.h
 include/ITK-%%ITK_VER%%/itkVertexCell.h
 include/ITK-%%ITK_VER%%/itkVertexCell.hxx
-include/ITK-%%ITK_VER%%/itkVesselEnhancingDiffusion3DImageFilter.h
-include/ITK-%%ITK_VER%%/itkVesselEnhancingDiffusion3DImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkVideoFileReader.h
 include/ITK-%%ITK_VER%%/itkVideoFileReader.hxx
 include/ITK-%%ITK_VER%%/itkVideoFileWriter.h
@@ -3241,8 +3156,6 @@ include/ITK-%%ITK_VER%%/itkVideoStream.h
 include/ITK-%%ITK_VER%%/itkVideoStream.hxx
 include/ITK-%%ITK_VER%%/itkVideoToVideoFilter.h
 include/ITK-%%ITK_VER%%/itkVideoToVideoFilter.hxx
-include/ITK-%%ITK_VER%%/itkViewImage.h
-include/ITK-%%ITK_VER%%/itkViewImage.hxx
 include/ITK-%%ITK_VER%%/itkVnlComplexToComplex1DFFTImageFilter.h
 include/ITK-%%ITK_VER%%/itkVnlComplexToComplex1DFFTImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkVnlComplexToComplexFFTImageFilter.h
@@ -3276,8 +3189,6 @@ include/ITK-%%ITK_VER%%/itkVoronoiSegmentationImageFilterBase.h
 include/ITK-%%ITK_VER%%/itkVoronoiSegmentationImageFilterBase.hxx
 include/ITK-%%ITK_VER%%/itkVoronoiSegmentationRGBImageFilter.h
 include/ITK-%%ITK_VER%%/itkVoronoiSegmentationRGBImageFilter.hxx
-include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillFloodingImageFilter.h
-include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillFloodingImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillingImageFilter.h
 include/ITK-%%ITK_VER%%/itkVotingBinaryHoleFillingImageFilter.hxx
 include/ITK-%%ITK_VER%%/itkVotingBinaryImageFilter.h
@@ -3321,8 +3232,6 @@ include/ITK-%%ITK_VER%%/itkWeightedCovarianceSampleFilter.h
 include/ITK-%%ITK_VER%%/itkWeightedCovarianceSampleFilter.hxx
 include/ITK-%%ITK_VER%%/itkWeightedMeanSampleFilter.h
 include/ITK-%%ITK_VER%%/itkWeightedMeanSampleFilter.hxx
-include/ITK-%%ITK_VER%%/itkWeightedSumFeatureAggregator.h
-include/ITK-%%ITK_VER%%/itkWeightedSumFeatureAggregator.hxx
 include/ITK-%%ITK_VER%%/itkWhitakerSparseLevelSetImage.h
 include/ITK-%%ITK_VER%%/itkWhitakerSparseLevelSetImage.hxx
 include/ITK-%%ITK_VER%%/itkWhiteTopHatImageFilter.h
@@ -3855,7 +3764,6 @@ include/ITK-%%ITK_VER%%/rtkZengBackProjectionImageFilter.hxx
 include/ITK-%%ITK_VER%%/rtkZengForwardProjectionImageFilter.h
 include/ITK-%%ITK_VER%%/rtkZengForwardProjectionImageFilter.hxx
 include/ITK-%%ITK_VER%%/stub.h
-include/ITK-%%ITK_VER%%/vtkCaptureScreen.h
 include/ITK-%%ITK_VER%%/znzlib.h
 include/RTK/lpsolve/lp_Hash.h
 include/RTK/lpsolve/lp_MDO.h
@@ -4045,11 +3953,9 @@ lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoCore.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoFiltering.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVideoIO.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVoronoi.cmake
-lib/cmake/ITK-%%ITK_VER%%/Modules/ITKVtkGlue.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/ITKWatersheds.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/ITKZLIB.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/LabelErodeDilate.cmake
-lib/cmake/ITK-%%ITK_VER%%/Modules/LesionSizingToolkit.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/MeshNoise.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/MeshToPolyData.cmake
 lib/cmake/ITK-%%ITK_VER%%/Modules/MinimalPathExtraction.cmake
@@ -4231,8 +4137,6 @@ lib/libITKVideoCore-%%ITK_VER%%.so
 lib/libITKVideoCore-%%ITK_VER%%.so.1
 lib/libITKVideoIO-%%ITK_VER%%.so
 lib/libITKVideoIO-%%ITK_VER%%.so.1
-lib/libITKVtkGlue-%%ITK_VER%%.so
-lib/libITKVtkGlue-%%ITK_VER%%.so.1
 lib/libITKWatersheds-%%ITK_VER%%.so
 lib/libITKWatersheds-%%ITK_VER%%.so.1
 lib/libITKgiftiio-%%ITK_VER%%.so
diff --git a/science/avogadrolibs/Makefile b/science/avogadrolibs/Makefile
index b6c54be01a66..96b7dc019a4f 100644
--- a/science/avogadrolibs/Makefile
+++ b/science/avogadrolibs/Makefile
@@ -1,5 +1,6 @@
 PORTNAME=	avogadrolibs
 DISTVERSION=	1.100.0
+PORTREVISION=	1
 CATEGORIES=	science
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/science/elmerfem/Makefile b/science/elmerfem/Makefile
index 81fb5bf4e664..6922d8d4b4eb 100644
--- a/science/elmerfem/Makefile
+++ b/science/elmerfem/Makefile
@@ -9,10 +9,12 @@ PATCHFILES=	48e9430c.patch:-p1 # https://github.com/ElmerCSC/elmerfem/pull/294
 
 MAINTAINER=	henrik@gulbra.net
 COMMENT=	Multiphysical simulation software
-WWW=		https://www.csc.fi/web/elmer
+WWW=		https://www.elmerfem.org/blog/
 
 LICENSE=	GPLv2
 
+BROKEN=		fails to build with vtk-9.5.0, see https://github.com/ElmerCSC/elmerfem/issues/677
+
 LIB_DEPENDS=	libblas.so:math/blas \
 		libhdf5.so:science/hdf5 \
 		libmetis.so:math/metis \
diff --git a/science/lammps/Makefile b/science/lammps/Makefile
index 1bdf467a781d..ca1ee8bb2653 100644
--- a/science/lammps/Makefile
+++ b/science/lammps/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	lammps
 PORTVERSION=	${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/S/_update/./:C/\.([1-9])$/.0\1/:S/.//g}
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/science/libaec/Makefile b/science/libaec/Makefile
index 8df9c8eecaa7..4c96052c3035 100644
--- a/science/libaec/Makefile
+++ b/science/libaec/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	libaec
-PORTVERSION=	1.1.3
+PORTVERSION=	1.1.4
 CATEGORIES=	science
 MASTER_SITES=	https://github.com/MathisRosenhauer/libaec/releases/download/v${PORTVERSION}/
 
@@ -13,7 +13,11 @@ LICENSE_FILE=	${WRKSRC}/LICENSE.txt
 
 USES=		cmake:testing
 
-CMAKE_OFF=	AEC_FUZZING BUILD_TESTING
+CMAKE_OFF=	AEC_FUZZING \
+		BUILD_TESTING
+CMAKE_ON=	BUILD_SHARED_LIBS \
+		BUILD_STATIC_LIBS \
+		libaec_INCLUDE_PACKAGING
 USE_LDCONFIG=	yes
 
 .include <bsd.port.mk>
diff --git a/science/libaec/distinfo b/science/libaec/distinfo
index 608c4223f5e4..d36e3dc23478 100644
--- a/science/libaec/distinfo
+++ b/science/libaec/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1711541240
-SHA256 (libaec-1.1.3.tar.gz) = bd8bea8b69ca602796b2daf17b0a7de019ce3c3bd0ad56fa9ef4a631a4088058
-SIZE (libaec-1.1.3.tar.gz) = 3137647
+TIMESTAMP = 1750188012
+SHA256 (libaec-1.1.4.tar.gz) = 1b9f3b913d9111469a83820ab62bb6a9f3ec7a5f9b6d681761776aecbc7fefbe
+SIZE (libaec-1.1.4.tar.gz) = 3148407
diff --git a/science/libaec/pkg-plist b/science/libaec/pkg-plist
index 703f76e3068c..c325028be7b8 100644
--- a/science/libaec/pkg-plist
+++ b/science/libaec/pkg-plist
@@ -1,11 +1,13 @@
-cmake/libaec-config-version.cmake
-cmake/libaec-config.cmake
 include/libaec.h
 include/szlib.h
+lib/cmake/libaec/libaec-config-version.cmake
+lib/cmake/libaec/libaec-config.cmake
+lib/cmake/libaec/libaec-targets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/libaec/libaec-targets.cmake
 lib/libaec.a
 lib/libaec.so
 lib/libaec.so.0
-lib/libaec.so.0.1.3
+lib/libaec.so.0.1.4
 lib/libsz.a
 lib/libsz.so
 lib/libsz.so.2
diff --git a/science/liggghts/Makefile b/science/liggghts/Makefile
index dadf1e6ed49b..d088170996e3 100644
--- a/science/liggghts/Makefile
+++ b/science/liggghts/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	liggghts
 DISTVERSION=	3.8.0-58
-PORTREVISION=	6
+PORTREVISION=	7
 DISTVERSIONSUFFIX=	-g6e28cfe3
 CATEGORIES=	science
 
diff --git a/science/mmg/Makefile b/science/mmg/Makefile
index 20acba012afe..a3bf8dc89a09 100644
--- a/science/mmg/Makefile
+++ b/science/mmg/Makefile
@@ -1,6 +1,7 @@
 PORTNAME=	mmg
 DISTVERSIONPREFIX=	v
 DISTVERSION=	5.7.3
+PORTREVISION=	1
 CATEGORIES=	science
 
 MAINTAINER=	ports@FreeBSD.org
diff --git a/science/openems/Makefile b/science/openems/Makefile
index 4ded654ac32c..04c0f0305e74 100644
--- a/science/openems/Makefile
+++ b/science/openems/Makefile
@@ -1,7 +1,7 @@
 PORTNAME=	openems
 DISTVERSIONPREFIX=	v
 DISTVERSION=	0.0.36
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	science
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index 84dc3d063216..53ae109ad5bb 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	paraview
 DISTVERSION=	${PARAVIEW_VER}.3
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science graphics
 MASTER_SITES=	http://www.paraview.org/files/v${PARAVIEW_VER}/
 DISTNAME=	ParaView-v${PORTVERSION}
diff --git a/science/py-asdf-standard/Makefile b/science/py-asdf-standard/Makefile
index 878ed49864f2..9283d803ac3f 100644
--- a/science/py-asdf-standard/Makefile
+++ b/science/py-asdf-standard/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	asdf-standard
-PORTVERSION=	1.2.0
+PORTVERSION=	1.3.0
 CATEGORIES=	science python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -17,7 +17,7 @@ BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}setuptools>=61:devel/py-setuptools@${PY_FL
 		${PYTHON_PKGNAMEPREFIX}setuptools-scm>=3.4:devel/py-setuptools-scm@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR}
 
-USES=		python:3.9+
+USES=		python
 USE_PYTHON=	autoplist concurrent pep517
 
 NO_ARCH=	yes
diff --git a/science/py-asdf-standard/distinfo b/science/py-asdf-standard/distinfo
index e5807137d6e1..b0cc521e77a1 100644
--- a/science/py-asdf-standard/distinfo
+++ b/science/py-asdf-standard/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748495843
-SHA256 (asdf_standard-1.2.0.tar.gz) = e709912faf0be2f5843a23af2731e6f76ed6c279b29df5989e1520992fa3c5cf
-SIZE (asdf_standard-1.2.0.tar.gz) = 272660
+TIMESTAMP = 1750188132
+SHA256 (asdf_standard-1.3.0.tar.gz) = 5958961f399dead2000a78724da37f5aeeb0499a780bbd9ae4fc3ecbe3eaed64
+SIZE (asdf_standard-1.3.0.tar.gz) = 273495
diff --git a/science/py-vedo/Makefile b/science/py-vedo/Makefile
index 01c9af75b515..ca0e5d9e8df8 100644
--- a/science/py-vedo/Makefile
+++ b/science/py-vedo/Makefile
@@ -1,5 +1,6 @@
 PORTNAME=	vedo
 DISTVERSION=	2024.5.3
+PORTREVISION=	1
 CATEGORIES=	science graphics python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}