diff options
Diffstat (limited to 'science')
77 files changed, 472 insertions, 305 deletions
diff --git a/science/ALPSCore/Makefile b/science/ALPSCore/Makefile index cf74402f2eed..b2dcc2d64830 100644 --- a/science/ALPSCore/Makefile +++ b/science/ALPSCore/Makefile @@ -3,7 +3,7 @@ DISTVERSIONPREFIX= v DISTVERSION= 2.3.2 CATEGORIES= science -MAINTAINER= alster@vinterdalen.se +MAINTAINER= alven@FreeBSD.org COMMENT= Generic algorithms and utilities for condensed matter physics WWW= https://alpscore.org/ \ https://github.com/ALPSCore/ALPSCore/ diff --git a/science/R-cran-udunits2/Makefile b/science/R-cran-udunits2/Makefile index 3825ea143033..c8fb34cb9bba 100644 --- a/science/R-cran-udunits2/Makefile +++ b/science/R-cran-udunits2/Makefile @@ -1,6 +1,5 @@ PORTNAME= udunits2 -PORTVERSION= 0.13.2.1 -PORTREVISION= 1 +PORTVERSION= 0.13.2.2 CATEGORIES= science DISTNAME= ${PORTNAME}_${DISTVERSION} @@ -10,8 +9,8 @@ WWW= https://cran.r-project.org/web/packages/udunits2/ LICENSE= GPLv2 -LIB_DEPENDS= libudunits2.so:science/udunits \ - libexpat.so:textproc/expat2 +LIB_DEPENDS= libexpat.so:textproc/expat2 \ + libudunits2.so:science/udunits USES= cran:auto-plist,compiles diff --git a/science/R-cran-udunits2/distinfo b/science/R-cran-udunits2/distinfo index 4049bcc2344c..095995f9577f 100644 --- a/science/R-cran-udunits2/distinfo +++ b/science/R-cran-udunits2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1647094615 -SHA256 (udunits2_0.13.2.1.tar.gz) = 9f5429c04a24930f7d037d506e5b154b6154df69247dcdaa6261075291d7f902 -SIZE (udunits2_0.13.2.1.tar.gz) = 68485 +TIMESTAMP = 1753248089 +SHA256 (udunits2_0.13.2.2.tar.gz) = 3e6dc4a12c155fa3e77f982084adbd6cb75d7a106d0b1a49ddc50a17fa4d045b +SIZE (udunits2_0.13.2.2.tar.gz) = 68840 diff --git a/science/afni/Makefile b/science/afni/Makefile index d86ff6f58c23..c555c6c25e04 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -1,6 +1,6 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 25.2.04 +DISTVERSION= 25.2.09 CATEGORIES= science biology graphics perl5 python MAINTAINER= fernape@FreeBSD.org diff --git a/science/afni/distinfo b/science/afni/distinfo index 0a6ba0342711..4ec769ac8338 100644 --- a/science/afni/distinfo +++ b/science/afni/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753035323 -SHA256 (afni-afni-AFNI_25.2.04_GH0.tar.gz) = 61fe5592f537949625fedc9f2cd4605c354b1cfeb41f1ed23d41a989a3a4ebab -SIZE (afni-afni-AFNI_25.2.04_GH0.tar.gz) = 53316183 +TIMESTAMP = 1756108500 +SHA256 (afni-afni-AFNI_25.2.09_GH0.tar.gz) = ff6aacf8a4f2b0b60ea584ece08e23db665488bfb1978957f05f30df6c394e05 +SIZE (afni-afni-AFNI_25.2.09_GH0.tar.gz) = 53321640 diff --git a/science/agrum/Makefile b/science/agrum/Makefile index 5046ef8d6bc2..ff6dce0acfc3 100644 --- a/science/agrum/Makefile +++ b/science/agrum/Makefile @@ -1,5 +1,5 @@ PORTNAME= agrum -DISTVERSION= 2.1.1 +DISTVERSION= 2.2.0 CATEGORIES= science math MAINTAINER= yuri@FreeBSD.org @@ -20,7 +20,7 @@ LLD_UNSAFE= yes USE_GITLAB= yes GL_ACCOUNT= agrumery GL_PROJECT= aGrUM -GL_TAGNAME= d15a377b0f745a6afd15139d780b23056305a851 +GL_TAGNAME= cf1283f783aa6803bafbd9a3fb4991316c1b52d9 SHEBANG_FILES= act @@ -58,8 +58,10 @@ PYTHON_RUN_DEPENDS= ${PYNUMPY} \ BINARY_ALIAS= gcc=${CC} g++=${CXX} # only for tests, see https://gitlab.com/agrumery/aGrUM/-/issues/100 -do-test: # tests fail to compile, see https://gitlab.com/agrumery/aGrUM/-/issues/148 +do-test: @cd ${WRKSRC} && \ ${SETENV} ${MAKE_ENV} ./act test release agrum -t all +# tests as of 2.2.0: Failed 0 of 1483 tests + .include <bsd.port.mk> diff --git a/science/agrum/distinfo b/science/agrum/distinfo index 13627e87a707..62c51836a6d8 100644 --- a/science/agrum/distinfo +++ b/science/agrum/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750005327 -SHA256 (agrumery-aGrUM-d15a377b0f745a6afd15139d780b23056305a851_GL0.tar.gz) = 21f6ad004e8ff15d4b41fb6e30f8c60db3631a84d756bd91d3972432710f8048 -SIZE (agrumery-aGrUM-d15a377b0f745a6afd15139d780b23056305a851_GL0.tar.gz) = 28781050 +TIMESTAMP = 1753632410 +SHA256 (agrumery-aGrUM-cf1283f783aa6803bafbd9a3fb4991316c1b52d9_GL0.tar.gz) = 57f7274925f64129c2f3bfcd178f75edd4cb6eaff1d06c30f20c85c41e6ca3d9 +SIZE (agrumery-aGrUM-cf1283f783aa6803bafbd9a3fb4991316c1b52d9_GL0.tar.gz) = 29175753 diff --git a/science/agrum/pkg-plist b/science/agrum/pkg-plist index 123d787ba5bd..9fe1f9999703 100644 --- a/science/agrum/pkg-plist +++ b/science/agrum/pkg-plist @@ -180,6 +180,7 @@ include/agrum/BN/learning/localSearchWithTabuList_tpl.h include/agrum/BN/learning/paramUtils/DAG2BNLearner.h include/agrum/BN/learning/paramUtils/DAG2BNLearner_inl.h include/agrum/BN/learning/paramUtils/DAG2BNLearner_tpl.h +include/agrum/BN/learning/paramUtils/EMApproximationScheme.h include/agrum/BN/learning/paramUtils/paramEstimator.h include/agrum/BN/learning/paramUtils/paramEstimatorML.h include/agrum/BN/learning/paramUtils/paramEstimatorML_inl.h diff --git a/science/arbor/Makefile b/science/arbor/Makefile index 15368c1b0ac6..d2d6e0cf6ef2 100644 --- a/science/arbor/Makefile +++ b/science/arbor/Makefile @@ -1,7 +1,7 @@ PORTNAME= arbor DISTVERSIONPREFIX= v DISTVERSION= 0.10.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/axom/Makefile b/science/axom/Makefile index 35f116e96434..58c94b7ba017 100644 --- a/science/axom/Makefile +++ b/science/axom/Makefile @@ -1,6 +1,7 @@ PORTNAME= axom DISTVERSIONPREFIX= v DISTVERSION= 0.10.1 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/bout++/Makefile b/science/bout++/Makefile index bbdf2813b4cd..43b9accad186 100644 --- a/science/bout++/Makefile +++ b/science/bout++/Makefile @@ -1,7 +1,7 @@ PORTNAME= bout++ DISTVERSIONPREFIX= v DISTVERSION= 5.1.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science math # physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/cantera/Makefile b/science/cantera/Makefile index ebaa5cf75809..61a965965fe2 100644 --- a/science/cantera/Makefile +++ b/science/cantera/Makefile @@ -1,7 +1,7 @@ PORTNAME= cantera DISTVERSIONPREFIX= v DISTVERSION= 3.1.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science # chemistry physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/cdf/Makefile b/science/cdf/Makefile index 803a95f11b0d..edc94cf929c9 100644 --- a/science/cdf/Makefile +++ b/science/cdf/Makefile @@ -5,7 +5,7 @@ MASTER_SITES= https://spdf.gsfc.nasa.gov/pub/software/cdf/dist/cdf39_1/ DISTNAME= cdf${VER}-dist-cdf DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} -MAINTAINER= alster@vinterdalen.se +MAINTAINER= alven@FreeBSD.org COMMENT= Device independent view of the CDF data model WWW= https://cdf.gsfc.nasa.gov/ diff --git a/science/chemical-mime-data/Makefile b/science/chemical-mime-data/Makefile index 064fad3e2128..f2cf0d3ea3dd 100644 --- a/science/chemical-mime-data/Makefile +++ b/science/chemical-mime-data/Makefile @@ -1,21 +1,28 @@ PORTNAME= chemical-mime-data PORTVERSION= 0.1.94 -PORTREVISION= 11 +PORTREVISION= 12 CATEGORIES= science -MASTER_SITES= SF/chemical-mime/${PORTNAME}/${PORTVERSION} - MAINTAINER= ports@FreeBSD.org COMMENT= Collection of chemical MIME types for UNIX desktops -WWW= http://chemical-mime.sourceforge.net/ +WWW= https://github.com/dleidert/chemical-mime + +LICENSE= LGPL21 +LICENSE_FILE= ${WRKSRC}/COPYING -USES= gettext-tools gmake gnome localbase:ldflags pathfix pkgconfig \ +USES= autoreconf gettext-tools gmake gnome localbase:ldflags pathfix pkgconfig \ shared-mime-info tar:bzip2 USE_GNOME= gnomemimedata intlhack librsvg2:build libxslt:build GNU_CONFIGURE= yes -CONFIGURE_ARGS= --disable-update-database +CONFIGURE_ARGS= --disable-update-database \ + --without-kde-magic + +USE_GITHUB= yes +GH_ACCOUNT= dleidert +GH_PROJECT= chemical-mime +GH_TAGNAME= 4fd66e3b3b7d922555d1e25587908b036805c45b post-patch: - @${REINPLACE_CMD} -e 's|*-*-solaris*|*| ; s|rsvg|rsvg-convert|g' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|-f png $$< |-f png $$< > |' ${WRKSRC}/icons/hicolor/Makefile.in + @${REINPLACE_CMD} -e 's:acronym|alias|comment|:acronym|alias|comment|generic-icon|:' \ + ${WRKSRC}/xsl/cmd_freedesktop_org.xsl .include <bsd.port.mk> diff --git a/science/chemical-mime-data/distinfo b/science/chemical-mime-data/distinfo index d00a171cc183..efec878a86be 100644 --- a/science/chemical-mime-data/distinfo +++ b/science/chemical-mime-data/distinfo @@ -1,2 +1,3 @@ -SHA256 (chemical-mime-data-0.1.94.tar.bz2) = 4907cdf60e9edca0a453f6f24e9179ae9da085b67168e932ba44a4280316bff1 -SIZE (chemical-mime-data-0.1.94.tar.bz2) = 146077 +TIMESTAMP = 1753696974 +SHA256 (dleidert-chemical-mime-0.1.94-4fd66e3b3b7d922555d1e25587908b036805c45b_GH0.tar.gz) = f40fdf56ef14c67ab59b6ebb2e6d513ddf5070929695b62e04d9f40a2baccfff +SIZE (dleidert-chemical-mime-0.1.94-4fd66e3b3b7d922555d1e25587908b036805c45b_GH0.tar.gz) = 84515 diff --git a/science/chemical-mime-data/pkg-plist b/science/chemical-mime-data/pkg-plist index c22391dc17c7..aaf1cf38383d 100644 --- a/science/chemical-mime-data/pkg-plist +++ b/science/chemical-mime-data/pkg-plist @@ -1,26 +1,14 @@ libdata/pkgconfig/chemical-mime-data.pc -share/doc/chemical-mime-data/chemical-mime-data.html -share/doc/chemical-mime-data/cmd.css -share/doc/chemical-mime-data/index.html -share/icons/hicolor/16x16/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/22x22/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/24x24/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/32x32/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/36x36/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/48x48/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/64x64/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/72x72/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/96x96/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/128x128/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/192x192/mimetypes/gnome-mime-chemical.png -share/icons/hicolor/scalable/mimetypes/gnome-mime-chemical.svgz +%%DATADIR%%/file/magic.mime +%%DATADIR%%/mime.types share/locale/de/LC_MESSAGES/chemical-mime-data.mo share/locale/fr/LC_MESSAGES/chemical-mime-data.mo -share/pixmaps/chemistry.png -share/pixmaps/gnome-mime-chemical.png -share/mime/packages/chemical-mime-data.xml share/mime-info/chemical-mime-data.keys share/mime-info/chemical-mime-data.mime +share/mime/packages/chemical-mime-data.xml +share/mimelnk/chemical/cml.desktop +share/mimelnk/chemical/pdb.desktop +share/mimelnk/chemical/seq-na-genbank.desktop share/mimelnk/chemical/x-alchemy.desktop share/mimelnk/chemical/x-cache.desktop share/mimelnk/chemical/x-cactvs-ascii.desktop @@ -31,11 +19,18 @@ share/mimelnk/chemical/x-cdxml.desktop share/mimelnk/chemical/x-chem3d.desktop share/mimelnk/chemical/x-cif.desktop share/mimelnk/chemical/x-cml.desktop +share/mimelnk/chemical/x-daylight-smiles.desktop share/mimelnk/chemical/x-dmol.desktop share/mimelnk/chemical/x-gamess-input.desktop share/mimelnk/chemical/x-gamess-output.desktop share/mimelnk/chemical/x-gaussian-input.desktop share/mimelnk/chemical/x-gaussian-log.desktop +share/mimelnk/chemical/x-gaussian-output.desktop +share/mimelnk/chemical/x-gaussian.desktop +share/mimelnk/chemical/x-gaussian03-output.desktop +share/mimelnk/chemical/x-gaussian92-output.desktop +share/mimelnk/chemical/x-gaussian94-output.desktop +share/mimelnk/chemical/x-gaussian98-output.desktop share/mimelnk/chemical/x-genbank.desktop share/mimelnk/chemical/x-gulp.desktop share/mimelnk/chemical/x-hin.desktop @@ -46,18 +41,24 @@ share/mimelnk/chemical/x-macromodel-input.desktop share/mimelnk/chemical/x-mdl-molfile.desktop share/mimelnk/chemical/x-mdl-rdfile.desktop share/mimelnk/chemical/x-mdl-rxnfile.desktop +share/mimelnk/chemical/x-mdl-sdfile.desktop share/mimelnk/chemical/x-mdl-tgf.desktop share/mimelnk/chemical/x-mmcif.desktop share/mimelnk/chemical/x-mol2.desktop share/mimelnk/chemical/x-mopac-graph.desktop +share/mimelnk/chemical/x-mopac-input.desktop share/mimelnk/chemical/x-mopac-out.desktop +share/mimelnk/chemical/x-mopac.desktop share/mimelnk/chemical/x-msi-car.desktop share/mimelnk/chemical/x-msi-hessian.desktop share/mimelnk/chemical/x-msi-mdf.desktop share/mimelnk/chemical/x-msi-msi.desktop +share/mimelnk/chemical/x-ncbi-asn1-ascii.desktop share/mimelnk/chemical/x-ncbi-asn1-binary.desktop share/mimelnk/chemical/x-ncbi-asn1-xml.desktop share/mimelnk/chemical/x-ncbi-asn1.desktop +share/mimelnk/chemical/x-pdb.desktop share/mimelnk/chemical/x-shelx.desktop share/mimelnk/chemical/x-vmd.desktop share/mimelnk/chemical/x-xyz.desktop +share/mimelnk/chemical/xyz.desktop diff --git a/science/chemicalfun/Makefile b/science/chemicalfun/Makefile index 02ab01468d81..9b3afed93586 100644 --- a/science/chemicalfun/Makefile +++ b/science/chemicalfun/Makefile @@ -1,6 +1,6 @@ PORTNAME= chemicalfun DISTVERSION= 0.1.8 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science # chemistry MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${PORTNAME}/get/${BB_COMMIT}${EXTRACT_SUFX}?dummy=/:src DISTFILES= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}:src diff --git a/science/cp2k-data/Makefile b/science/cp2k-data/Makefile index 8bc9337cd7b9..bc2ad72bb356 100644 --- a/science/cp2k-data/Makefile +++ b/science/cp2k-data/Makefile @@ -1,6 +1,6 @@ PORTNAME= cp2k-data DISTVERSIONPREFIX= v -DISTVERSION= 2025.1 +DISTVERSION= 2025.2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/cp2k-data/distinfo b/science/cp2k-data/distinfo index 004194f14912..264eccf26d02 100644 --- a/science/cp2k-data/distinfo +++ b/science/cp2k-data/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1735891303 -SHA256 (cp2k-cp2k-v2025.1_GH0.tar.gz) = 9b58062b9aed51de06cb1248f5dbeab2741962f03eb72c4025b9d0533af1805e -SIZE (cp2k-cp2k-v2025.1_GH0.tar.gz) = 87315415 +TIMESTAMP = 1753646804 +SHA256 (cp2k-cp2k-v2025.2_GH0.tar.gz) = 02432be1f6b56bab1d4b43e86e28ba495405d6f4015f2610f3376d56495ef74b +SIZE (cp2k-cp2k-v2025.2_GH0.tar.gz) = 88095973 diff --git a/science/cp2k-data/pkg-plist b/science/cp2k-data/pkg-plist index 3e641bb9296c..27d24338488a 100644 --- a/science/cp2k-data/pkg-plist +++ b/science/cp2k-data/pkg-plist @@ -1,6 +1,7 @@ %%DATADIR%%/ALL_BASIS_SETS %%DATADIR%%/ALL_POTENTIALS %%DATADIR%%/AcPP1_POTENTIALS +%%DATADIR%%/AcPP2_POTENTIALS %%DATADIR%%/Allegro/gra-water-deployed-neq060sp.pth %%DATADIR%%/Allegro/si-deployed-neq060dp.pth %%DATADIR%%/BASIS_ADMM @@ -12,6 +13,7 @@ %%DATADIR%%/BASIS_MINIX %%DATADIR%%/BASIS_MOLOPT %%DATADIR%%/BASIS_MOLOPT_AcPP1 +%%DATADIR%%/BASIS_MOLOPT_AcPP2 %%DATADIR%%/BASIS_MOLOPT_LnPP1 %%DATADIR%%/BASIS_MOLOPT_LnPP2 %%DATADIR%%/BASIS_MOLOPT_PSI @@ -139,7 +141,7 @@ %%DATADIR%%/DFTB/scc/zns.spl %%DATADIR%%/DFTB/scc/znzn.spl %%DATADIR%%/DFTB/uff_table -%%DATADIR%%/DeePMD/W.pb +%%DATADIR%%/DeePMD/water_dpa2.pth %%DATADIR%%/ECP_POTENTIALS %%DATADIR%%/ECP_POTENTIALS_pob-TZVP-rev2 %%DATADIR%%/EMSL_BASIS_SETS @@ -185,6 +187,17 @@ %%DATADIR%%/NNP/bulkH2O-jcp2020-cnnp/nnp-8/scaling.data %%DATADIR%%/NNP/bulkH2O-jcp2020-cnnp/nnp-8/weights.001.data %%DATADIR%%/NNP/bulkH2O-jcp2020-cnnp/nnp-8/weights.008.data +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/input.nn +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/readme.md +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/scaling.data +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/weights.001.data +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/weights.002.data +%%DATADIR%%/NNP/protH2OHelium-interaction-nnp/weights.008.data +%%DATADIR%%/NNP/protH2Ocluster-jctc2020-nnp/input.nn +%%DATADIR%%/NNP/protH2Ocluster-jctc2020-nnp/readme.md +%%DATADIR%%/NNP/protH2Ocluster-jctc2020-nnp/scaling.data +%%DATADIR%%/NNP/protH2Ocluster-jctc2020-nnp/weights.001.data +%%DATADIR%%/NNP/protH2Ocluster-jctc2020-nnp/weights.008.data %%DATADIR%%/NequIP/water-deployed-neq060dp.pth %%DATADIR%%/NequIP/water-deployed-neq060sp.pth %%DATADIR%%/POTENTIAL diff --git a/science/cp2k/Makefile b/science/cp2k/Makefile index f6b05741f098..46e7081d3302 100644 --- a/science/cp2k/Makefile +++ b/science/cp2k/Makefile @@ -1,7 +1,6 @@ PORTNAME= cp2k DISTVERSIONPREFIX= v -DISTVERSION= 2025.1 -PORTREVISION= 2 +DISTVERSION= 2025.2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -61,5 +60,6 @@ do-test: install ./tests/do_regtest.py ${BUILD_WRKSRC}/bin ${EXE_VERSION} # build instructions: https://github.com/cp2k/cp2k/blob/master/INSTALL.md +# tests as of 2025.2: Summary: correct: 3009 / 3012; failed: 3; 141min .include <bsd.port.mk> diff --git a/science/cp2k/distinfo b/science/cp2k/distinfo index e6c365e0e377..aee1bed85e63 100644 --- a/science/cp2k/distinfo +++ b/science/cp2k/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1735886722 -SHA256 (cp2k-cp2k-v2025.1_GH0.tar.gz) = 9b58062b9aed51de06cb1248f5dbeab2741962f03eb72c4025b9d0533af1805e -SIZE (cp2k-cp2k-v2025.1_GH0.tar.gz) = 87315415 +TIMESTAMP = 1753641251 +SHA256 (cp2k-cp2k-v2025.2_GH0.tar.gz) = 02432be1f6b56bab1d4b43e86e28ba495405d6f4015f2610f3376d56495ef74b +SIZE (cp2k-cp2k-v2025.2_GH0.tar.gz) = 88095973 diff --git a/science/cp2k/files/patch-cmake_CompilerConfiguration.cmake b/science/cp2k/files/patch-cmake_CompilerConfiguration.cmake index 1ec302774635..3b5407d20736 100644 --- a/science/cp2k/files/patch-cmake_CompilerConfiguration.cmake +++ b/science/cp2k/files/patch-cmake_CompilerConfiguration.cmake @@ -1,11 +1,37 @@ ---- cmake/CompilerConfiguration.cmake.orig 2024-09-04 05:25:49 UTC +--- cmake/CompilerConfiguration.cmake.orig 2025-07-23 08:02:03 UTC +++ cmake/CompilerConfiguration.cmake -@@ -35,7 +35,7 @@ add_compile_options( - # https://github.com/cp2k/dbcsr/issues/261 eventually check compiler version - # (similar to -h system_alloc) - add_compile_options( -- "$<$<COMPILE_LANG_AND_ID:Fortran,GNU>:-mtune=native;-ffree-line-length-512;-ffree-form;-std=f2008;-fimplicit-none;-Werror=aliasing;-Werror=ampersand;-Werror=c-binding-type;-Werror=conversion;-Werror=intrinsic-shadow;-Werror=intrinsics-std;-Werror=line-truncation;-Werror=tabs;-Werror=target-lifetime;-Werror=underflow;-Werror=unused-but-set-variable;-Werror=unused-variable>" -+ "$<$<COMPILE_LANG_AND_ID:Fortran,GNU>:-ffree-line-length-512;-ffree-form;-std=f2008;-fimplicit-none;-Werror=aliasing;-Werror=ampersand;-Werror=c-binding-type;-Werror=conversion;-Werror=intrinsic-shadow;-Werror=intrinsics-std;-Werror=line-truncation;-Werror=tabs;-Werror=target-lifetime;-Werror=underflow;-Werror=unused-but-set-variable;-Werror=unused-variable>" - "$<$<AND:$<COMPILE_LANG_AND_ID:Fortran,GNU>,$<VERSION_GREATER_EQUAL:${CMAKE_Fortran_COMPILER_VERSION},11>>:-fallow-argument-mismatch>" - "$<$<COMPILE_LANG_AND_ID:Fortran,Intel>:-free -stand=f18 -fpp -heap-arrays>" - "$<$<COMPILE_LANG_AND_ID:Fortran,PGI>:-Mfreeform -Mextend -Mallocatable=03>" +@@ -53,9 +53,9 @@ add_compile_options( + + # Release + add_compile_options( +- "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:Fortran,GNU>>:-O3;-march=native;-mtune=native;-funroll-loops>" +- "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:CXX,GNU>>:-O3;-march=native;-mtune=native;-funroll-loops>" +- "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:C,GNU>>:-O3;-march=native;-mtune=native;-funroll-loops>" ++ "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:Fortran,GNU>>:-O3;-funroll-loops>" ++ "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:CXX,GNU>>:-O3;-funroll-loops>" ++ "$<$<AND:$<CONFIG:RELEASE>,$<COMPILE_LANG_AND_ID:C,GNU>>:-O3;-funroll-loops>" + ) + + # Generic +@@ -67,9 +67,9 @@ add_compile_options( + + # Debug + add_compile_options( +- "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:Fortran,GNU>>:-O1;-march=native;-mtune=native>" +- "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:CXX,GNU>>:-O1;-march=native;-mtune=native>" +- "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:C,GNU>>:-O1;-march=native;-mtune=native>" ++ "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:Fortran,GNU>>:-O1>" ++ "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:CXX,GNU>>:-O1>" ++ "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:C,GNU>>:-O1>" + ) + add_compile_options( + "$<$<AND:$<CONFIG:DEBUG>,$<COMPILE_LANG_AND_ID:Fortran,GNU>>:-fsanitize=leak;-Werror=realloc-lhs>" +@@ -100,7 +100,7 @@ add_compile_options( + + # Address Sanitizer + add_compile_options( +- "$<$<CONFIG:ASAN>:-fsanitize=address;-no-pie;-O3;-march=native;-mtune=native;-funroll-loops>" ++ "$<$<CONFIG:ASAN>:-fsanitize=address;-no-pie;-O3;-funroll-loops>" + ) + add_link_options("$<$<CONFIG:ASAN>:-fsanitize=address>") + diff --git a/science/cp2k/pkg-plist b/science/cp2k/pkg-plist index b502f43f6bfb..bc47f0049444 100644 --- a/science/cp2k/pkg-plist +++ b/science/cp2k/pkg-plist @@ -6,12 +6,15 @@ bin/dumpdcd%%SUFFIX%% bin/graph%%SUFFIX%% bin/grid_miniapp%%SUFFIX%% bin/grid_unittest%%SUFFIX%% +bin/gx_ac_unittest%%SUFFIX%% bin/libcp2k_unittest%%SUFFIX%% bin/memory_utilities_unittest%%SUFFIX%% bin/nequip_unittest%%SUFFIX%% bin/parallel_rng_types_unittest%%SUFFIX%% bin/xyz2dcd%%SUFFIX%% include/cp2k/libcp2k.h +include/cp2k/mod_files/ace_nlist.mod +include/cp2k/mod_files/ace_wrapper.mod include/cp2k/mod_files/admm_dm_methods.mod include/cp2k/mod_files/admm_dm_types.mod include/cp2k/mod_files/admm_methods.mod @@ -59,6 +62,7 @@ include/cp2k/mod_files/arnoldi_data_methods.mod include/cp2k/mod_files/arnoldi_geev.mod include/cp2k/mod_files/arnoldi_methods.mod include/cp2k/mod_files/arnoldi_types.mod +include/cp2k/mod_files/arnoldi_vector.mod include/cp2k/mod_files/atom.mod include/cp2k/mod_files/atom_admm_methods.mod include/cp2k/mod_files/atom_basis.mod @@ -146,6 +150,7 @@ include/cp2k/mod_files/cp_control_types.mod include/cp2k/mod_files/cp_control_utils.mod include/cp2k/mod_files/cp_dbcsr_api.mod include/cp2k/mod_files/cp_dbcsr_cholesky.mod +include/cp2k/mod_files/cp_dbcsr_contrib.mod include/cp2k/mod_files/cp_dbcsr_cp2k_link.mod include/cp2k/mod_files/cp_dbcsr_diag.mod include/cp2k/mod_files/cp_dbcsr_operations.mod @@ -209,7 +214,6 @@ include/cp2k/mod_files/ct_types.mod include/cp2k/mod_files/cube_utils.mod include/cp2k/mod_files/d3_poly.mod include/cp2k/mod_files/damping_dipole_types.mod -include/cp2k/mod_files/dbcsr_vector.mod include/cp2k/mod_files/dbm_api.mod include/cp2k/mod_files/dbm_tests.mod include/cp2k/mod_files/dbt_allocate_wrap.mod @@ -354,6 +358,7 @@ include/cp2k/mod_files/generic_os_integrals.mod include/cp2k/mod_files/generic_shg_integrals.mod include/cp2k/mod_files/generic_shg_integrals_init.mod include/cp2k/mod_files/geo_opt.mod +include/cp2k/mod_files/gfun.mod include/cp2k/mod_files/glbopt_callback.mod include/cp2k/mod_files/glbopt_history.mod include/cp2k/mod_files/glbopt_input.mod @@ -370,6 +375,7 @@ include/cp2k/mod_files/gopt_param_types.mod include/cp2k/mod_files/graph_methods.mod include/cp2k/mod_files/graph_utils.mod include/cp2k/mod_files/graphcon.mod +include/cp2k/mod_files/greenx_interface.mod include/cp2k/mod_files/grid_api.mod include/cp2k/mod_files/group_dist_types.mod include/cp2k/mod_files/grrm_utils.mod @@ -380,6 +386,7 @@ include/cp2k/mod_files/gw_large_cell_gamma.mod include/cp2k/mod_files/gw_main.mod include/cp2k/mod_files/gw_small_cell_full_kp.mod include/cp2k/mod_files/gw_utils.mod +include/cp2k/mod_files/hairy_probes.mod include/cp2k/mod_files/hartree_local_methods.mod include/cp2k/mod_files/hartree_local_types.mod include/cp2k/mod_files/hdf5_wrapper.mod @@ -505,7 +512,6 @@ include/cp2k/mod_files/kpoint_methods.mod include/cp2k/mod_files/kpoint_transitional.mod include/cp2k/mod_files/kpoint_types.mod include/cp2k/mod_files/kpsym.mod -include/cp2k/mod_files/lapack.mod include/cp2k/mod_files/lazy.mod include/cp2k/mod_files/lebedev.mod include/cp2k/mod_files/libcp2k.mod @@ -533,6 +539,7 @@ include/cp2k/mod_files/lri_optimize_ri_basis.mod include/cp2k/mod_files/lri_optimize_ri_basis_types.mod include/cp2k/mod_files/ls_matrix_exp.mod include/cp2k/mod_files/machine.mod +include/cp2k/mod_files/manybody_ace.mod include/cp2k/mod_files/manybody_allegro.mod include/cp2k/mod_files/manybody_deepmd.mod include/cp2k/mod_files/manybody_eam.mod @@ -790,6 +797,8 @@ include/cp2k/mod_files/qs_2nd_kernel_ao.mod include/cp2k/mod_files/qs_active_space_methods.mod include/cp2k/mod_files/qs_active_space_types.mod include/cp2k/mod_files/qs_active_space_utils.mod +include/cp2k/mod_files/qs_apt_fdiff_methods.mod +include/cp2k/mod_files/qs_apt_fdiff_types.mod include/cp2k/mod_files/qs_atomic_block.mod include/cp2k/mod_files/qs_band_structure.mod include/cp2k/mod_files/qs_basis_gradient.mod @@ -1001,10 +1010,6 @@ include/cp2k/mod_files/qs_tddfpt2_stda_utils.mod include/cp2k/mod_files/qs_tddfpt2_subgroups.mod include/cp2k/mod_files/qs_tddfpt2_types.mod include/cp2k/mod_files/qs_tddfpt2_utils.mod -include/cp2k/mod_files/qs_tddfpt_eigensolver.mod -include/cp2k/mod_files/qs_tddfpt_module.mod -include/cp2k/mod_files/qs_tddfpt_types.mod -include/cp2k/mod_files/qs_tddfpt_utils.mod include/cp2k/mod_files/qs_tensors.mod include/cp2k/mod_files/qs_tensors_types.mod include/cp2k/mod_files/qs_update_s_mstruct.mod @@ -1027,6 +1032,8 @@ include/cp2k/mod_files/replica_types.mod include/cp2k/mod_files/response_solver.mod include/cp2k/mod_files/restraint.mod include/cp2k/mod_files/ri_environment_methods.mod +include/cp2k/mod_files/rixs_methods.mod +include/cp2k/mod_files/rixs_types.mod include/cp2k/mod_files/rmsd.mod include/cp2k/mod_files/routine_map.mod include/cp2k/mod_files/rpa_communication.mod @@ -1135,6 +1142,9 @@ include/cp2k/mod_files/tamc_run.mod include/cp2k/mod_files/taper_types.mod include/cp2k/mod_files/task_list_methods.mod include/cp2k/mod_files/task_list_types.mod +include/cp2k/mod_files/tblite_interface.mod +include/cp2k/mod_files/tblite_ks_matrix.mod +include/cp2k/mod_files/tblite_types.mod include/cp2k/mod_files/thermal_region_types.mod include/cp2k/mod_files/thermal_region_utils.mod include/cp2k/mod_files/thermostat_mapping.mod @@ -1259,6 +1269,7 @@ include/cp2k/mod_files/xc_xbr_pbe_lda_hole_t_c_lr.mod include/cp2k/mod_files/xc_xlda_hole_t_c_lr.mod include/cp2k/mod_files/xc_xpbe_hole_t_c_lr.mod include/cp2k/mod_files/xc_xwpbe.mod +include/cp2k/mod_files/xmgrace.mod include/cp2k/mod_files/xray_diffraction.mod include/cp2k/mod_files/xtb_coulomb.mod include/cp2k/mod_files/xtb_eeq.mod @@ -1270,11 +1281,13 @@ include/cp2k/mod_files/xtb_ks_matrix.mod include/cp2k/mod_files/xtb_matrices.mod include/cp2k/mod_files/xtb_parameters.mod include/cp2k/mod_files/xtb_potentials.mod +include/cp2k/mod_files/xtb_qresp.mod include/cp2k/mod_files/xtb_types.mod lib/cmake/cp2k/cp2kConfig.cmake lib/cmake/cp2k/cp2kConfigVersion.cmake lib/cmake/cp2k/cp2kTargets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/cp2k/cp2kTargets.cmake +lib/cmake/cp2k/modules/FindACE.cmake lib/cmake/cp2k/modules/FindArmpl.cmake lib/cmake/cp2k/modules/FindAtlas.cmake lib/cmake/cp2k/modules/FindBlas.cmake @@ -1288,28 +1301,25 @@ lib/cmake/cp2k/modules/FindGenericBLAS.cmake lib/cmake/cp2k/modules/FindLapack.cmake lib/cmake/cp2k/modules/FindLibVDWXC.cmake lib/cmake/cp2k/modules/FindLibVORI.cmake -lib/cmake/cp2k/modules/FindLibXC.cmake lib/cmake/cp2k/modules/FindLibXSMM.cmake lib/cmake/cp2k/modules/FindLibint2.cmake lib/cmake/cp2k/modules/FindMKL.cmake -lib/cmake/cp2k/modules/FindMetis.cmake lib/cmake/cp2k/modules/FindNVHPCBlas.cmake lib/cmake/cp2k/modules/FindOpenBLAS.cmake -lib/cmake/cp2k/modules/FindPEXSI.cmake lib/cmake/cp2k/modules/FindPlumed.cmake -lib/cmake/cp2k/modules/FindPtscotch.cmake -lib/cmake/cp2k/modules/FindQuip.cmake lib/cmake/cp2k/modules/FindSCALAPACK.cmake lib/cmake/cp2k/modules/FindSCI.cmake -lib/cmake/cp2k/modules/FindSuperLU.cmake +lib/cmake/cp2k/modules/FindTrexIO.cmake +lib/cmake/cp2k/modules/Findlibsmeagol.cmake lib/cmake/cp2k/modules/Finducc.cmake lib/cmake/cp2k/modules/cp2k_utils.cmake lib/libcp2k.so -lib/libcp2k.so.2025.1 +lib/libcp2k.so.2025.2 libdata/pkgconfig/libcp2k.pc %%DATADIR%%/data/ALL_BASIS_SETS %%DATADIR%%/data/ALL_POTENTIALS %%DATADIR%%/data/AcPP1_POTENTIALS +%%DATADIR%%/data/AcPP2_POTENTIALS %%DATADIR%%/data/Allegro/gra-water-deployed-neq060sp.pth %%DATADIR%%/data/Allegro/si-deployed-neq060dp.pth %%DATADIR%%/data/BASIS_ADMM @@ -1321,6 +1331,7 @@ libdata/pkgconfig/libcp2k.pc %%DATADIR%%/data/BASIS_MINIX %%DATADIR%%/data/BASIS_MOLOPT %%DATADIR%%/data/BASIS_MOLOPT_AcPP1 +%%DATADIR%%/data/BASIS_MOLOPT_AcPP2 %%DATADIR%%/data/BASIS_MOLOPT_LnPP1 %%DATADIR%%/data/BASIS_MOLOPT_LnPP2 %%DATADIR%%/data/BASIS_MOLOPT_PSI @@ -1448,7 +1459,7 @@ libdata/pkgconfig/libcp2k.pc %%DATADIR%%/data/DFTB/scc/zns.spl %%DATADIR%%/data/DFTB/scc/znzn.spl %%DATADIR%%/data/DFTB/uff_table -%%DATADIR%%/data/DeePMD/W.pb +%%DATADIR%%/data/DeePMD/water_dpa2.pth %%DATADIR%%/data/ECP_POTENTIALS %%DATADIR%%/data/ECP_POTENTIALS_pob-TZVP-rev2 %%DATADIR%%/data/EMSL_BASIS_SETS @@ -1494,6 +1505,17 @@ libdata/pkgconfig/libcp2k.pc %%DATADIR%%/data/NNP/bulkH2O-jcp2020-cnnp/nnp-8/scaling.data %%DATADIR%%/data/NNP/bulkH2O-jcp2020-cnnp/nnp-8/weights.001.data %%DATADIR%%/data/NNP/bulkH2O-jcp2020-cnnp/nnp-8/weights.008.data +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/input.nn +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/readme.md +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/scaling.data +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/weights.001.data +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/weights.002.data +%%DATADIR%%/data/NNP/protH2OHelium-interaction-nnp/weights.008.data +%%DATADIR%%/data/NNP/protH2Ocluster-jctc2020-nnp/input.nn +%%DATADIR%%/data/NNP/protH2Ocluster-jctc2020-nnp/readme.md +%%DATADIR%%/data/NNP/protH2Ocluster-jctc2020-nnp/scaling.data +%%DATADIR%%/data/NNP/protH2Ocluster-jctc2020-nnp/weights.001.data +%%DATADIR%%/data/NNP/protH2Ocluster-jctc2020-nnp/weights.008.data %%DATADIR%%/data/NequIP/water-deployed-neq060dp.pth %%DATADIR%%/data/NequIP/water-deployed-neq060sp.pth %%DATADIR%%/data/POTENTIAL diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile index 707410f4fa7a..e4b2b99739a4 100644 --- a/science/csvtk/Makefile +++ b/science/csvtk/Makefile @@ -1,7 +1,7 @@ PORTNAME= csvtk DISTVERSIONPREFIX= v -DISTVERSION= 0.33.0 -PORTREVISION= 4 +DISTVERSION= 0.34.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= jwb@FreeBSD.org diff --git a/science/csvtk/distinfo b/science/csvtk/distinfo index 2baa84299593..0dfce56d9fa9 100644 --- a/science/csvtk/distinfo +++ b/science/csvtk/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1741868386 -SHA256 (go/science_csvtk/csvtk-v0.33.0/v0.33.0.mod) = b5fff90dd2b700db63cca9340ed60790096bd3f0e6650b0e159d9fa860fcc121 -SIZE (go/science_csvtk/csvtk-v0.33.0/v0.33.0.mod) = 2688 -SHA256 (go/science_csvtk/csvtk-v0.33.0/v0.33.0.zip) = 54d692d43c8c6dbd578355c7e810a658b52f68513e6a6246df192e139d6c1f3b -SIZE (go/science_csvtk/csvtk-v0.33.0/v0.33.0.zip) = 2617821 -SHA256 (go/science_csvtk/csvtk-v0.33.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 -SIZE (go/science_csvtk/csvtk-v0.33.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234 +TIMESTAMP = 1753550609 +SHA256 (go/science_csvtk/csvtk-v0.34.0/v0.34.0.mod) = 485d911da4192efc1aaf72df722990fb897f03cdac18aff77fee199a3dab507f +SIZE (go/science_csvtk/csvtk-v0.34.0/v0.34.0.mod) = 2607 +SHA256 (go/science_csvtk/csvtk-v0.34.0/v0.34.0.zip) = aa1a8825b1c69e507717b825c270d9849234ee21da04f0b58d9f064056f1c971 +SIZE (go/science_csvtk/csvtk-v0.34.0/v0.34.0.zip) = 2656260 +SHA256 (go/science_csvtk/csvtk-v0.34.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 +SIZE (go/science_csvtk/csvtk-v0.34.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234 diff --git a/science/dynare/Makefile b/science/dynare/Makefile index 0856cc00a8ed..d0babbf623e3 100644 --- a/science/dynare/Makefile +++ b/science/dynare/Makefile @@ -1,6 +1,6 @@ PORTNAME= dynare DISTVERSION= 5.4 -PORTREVISION= 13 +PORTREVISION= 14 CATEGORIES= science # economics MASTER_SITES= https://www.dynare.org/release/source/ diff --git a/science/eccodes/pkg-plist b/science/eccodes/pkg-plist index 29dff88bf736..52d540fa23dd 100644 --- a/science/eccodes/pkg-plist +++ b/science/eccodes/pkg-plist @@ -19886,7 +19886,7 @@ libdata/pkgconfig/eccodes.pc %%DATADIR%%/definitions/grib2/tables/34/5.6.table %%DATADIR%%/definitions/grib2/tables/34/5.7.table %%DATADIR%%/definitions/grib2/tables/34/6.0.table -%%DATADIR%%/definitions/grib2/tables/35/%%PERL_VER%%.table +%%DATADIR%%/definitions/grib2/tables/35/5.40.table %%DATADIR%%/definitions/grib2/tables/35/0.0.table %%DATADIR%%/definitions/grib2/tables/35/1.0.table %%DATADIR%%/definitions/grib2/tables/35/1.1.table diff --git a/science/fastjet/Makefile b/science/fastjet/Makefile index 8990a1950f62..00a5ee17b4c4 100644 --- a/science/fastjet/Makefile +++ b/science/fastjet/Makefile @@ -1,5 +1,5 @@ PORTNAME= fastjet -DISTVERSION= 3.4.3 +DISTVERSION= 3.5.1 CATEGORIES= science MASTER_SITES= https://fastjet.fr/repo/ @@ -46,7 +46,7 @@ post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/lib*.so* post-install-PYTHON-on: - @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet.so.0.0.0 + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet_swig.so.0.0.0 do-test: # python tests diff --git a/science/fastjet/distinfo b/science/fastjet/distinfo index c318c545d2f6..896e7e12357e 100644 --- a/science/fastjet/distinfo +++ b/science/fastjet/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1730346663 -SHA256 (fastjet-3.4.3.tar.gz) = cc175471bfab8656b8c6183a8e5e9ad05d5f7506e46f3212a9a8230905b8f6a3 -SIZE (fastjet-3.4.3.tar.gz) = 2984798 +TIMESTAMP = 1755888400 +SHA256 (fastjet-3.5.1.tar.gz) = 9a4154163e72041dee3fdde9cb24e814625e178091a8734a6ad5375e5371b423 +SIZE (fastjet-3.5.1.tar.gz) = 3069022 diff --git a/science/fastjet/pkg-plist b/science/fastjet/pkg-plist index 35b8c8caf328..5f83019a7641 100644 --- a/science/fastjet/pkg-plist +++ b/science/fastjet/pkg-plist @@ -129,11 +129,12 @@ lib/libsiscone_spherical.so lib/libsiscone_spherical.so.0 lib/libsiscone_spherical.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-1.pyc +%%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-2.pyc %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.pyc -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.a -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0 -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0.0.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.a +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/fastjet.py %%PYTHON%%%%DATADIR%%/pyinterface/FastJetPythonExtensions.hh %%PYTHON%%%%DATADIR%%/pyinterface/fastjet-doc.i diff --git a/science/gramps/Makefile b/science/gramps/Makefile index 4074db4cc44f..f261cd0a1aa4 100644 --- a/science/gramps/Makefile +++ b/science/gramps/Makefile @@ -1,5 +1,5 @@ PORTNAME= gramps -DISTVERSION= 6.0.3 +DISTVERSION= 6.0.4 CATEGORIES= science gnome python MASTER_SITES= PYPI diff --git a/science/gramps/distinfo b/science/gramps/distinfo index 7f082b790a6b..30016e379016 100644 --- a/science/gramps/distinfo +++ b/science/gramps/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750276417 -SHA256 (gramps-6.0.3.tar.gz) = 079fab79c330c2332e5cc5cd1ec9e953a2b76d9f103aa774b7850d01baf874ee -SIZE (gramps-6.0.3.tar.gz) = 21803163 +TIMESTAMP = 1754945114 +SHA256 (gramps-6.0.4.tar.gz) = ebabb1cfa8dc61859ee0e9c4ad0b54c94ccff2809dd1b0895a38a46b80382692 +SIZE (gramps-6.0.4.tar.gz) = 21963080 diff --git a/science/hypre/Makefile b/science/hypre/Makefile index d5df638850a3..a439de1d4f3c 100644 --- a/science/hypre/Makefile +++ b/science/hypre/Makefile @@ -1,6 +1,7 @@ PORTNAME= hypre DISTVERSIONPREFIX= v DISTVERSION= 2.33.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/kalzium/distinfo b/science/kalzium/distinfo index 55a8ed08734d..dc9bdf4527dc 100644 --- a/science/kalzium/distinfo +++ b/science/kalzium/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751381644 -SHA256 (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = d8d76ae3d123d93fe0ddf33992d7c85292ec5560b76a634f9bf2d731c2fccada -SIZE (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = 22660296 +TIMESTAMP = 1754646547 +SHA256 (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 8765737e7baeb7fb0d0c16112ce11694ddb90a102e8e6b3e723dae9d595b8529 +SIZE (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 22650880 diff --git a/science/kalzium/pkg-plist b/science/kalzium/pkg-plist index 6d96ce611615..08dc853471f9 100644 --- a/science/kalzium/pkg-plist +++ b/science/kalzium/pkg-plist @@ -10,6 +10,9 @@ include/libkdeedu/psetables.h include/libkdeedu/science_export.h include/libkdeedu/spectrum.h include/libkdeedu/spectrumparser.h +lib/libcompoundviewer.so +lib/libcompoundviewer.so.5 +lib/libcompoundviewer.so.5.0.0 lib/libscience.so lib/libscience.so.5 lib/libscience.so.5.0.0 @@ -348,6 +351,7 @@ share/icons/hicolor/scalable/apps/kalzium.svgz %%DATADIR%%/icons/hicolor/scalable/actions/statematter.svgz %%DATADIR%%/icons/hicolor/scalable/actions/timeline.svgz %%DATADIR%%/icons/hicolor/scalable/actions/tooltip.svgz +share/knsrcfiles/kalzium.knsrc share/libkdeedu/data/elements.xml share/libkdeedu/data/isotopes.xml share/libkdeedu/data/spectra.xml @@ -383,6 +387,7 @@ share/locale/hi/LC_MESSAGES/kalzium.mo share/locale/hne/LC_MESSAGES/kalzium.mo share/locale/hr/LC_MESSAGES/kalzium.mo share/locale/hu/LC_MESSAGES/kalzium.mo +share/locale/ia/LC_MESSAGES/kalzium.mo share/locale/is/LC_MESSAGES/kalzium.mo share/locale/it/LC_MESSAGES/kalzium.mo share/locale/ja/LC_MESSAGES/kalzium.mo @@ -424,6 +429,21 @@ share/locale/uk/LC_MESSAGES/kalzium.mo share/locale/xh/LC_MESSAGES/kalzium.mo share/locale/zh_CN/LC_MESSAGES/kalzium.mo share/locale/zh_TW/LC_MESSAGES/kalzium.mo +share/man/ca/man1/kalzium.1.gz +share/man/da/man1/kalzium.1.gz +share/man/de/man1/kalzium.1.gz +share/man/es/man1/kalzium.1.gz +share/man/et/man1/kalzium.1.gz +share/man/fr/man1/kalzium.1.gz +share/man/gl/man1/kalzium.1.gz +share/man/it/man1/kalzium.1.gz share/man/man1/kalzium.1.gz +share/man/nl/man1/kalzium.1.gz +share/man/pl/man1/kalzium.1.gz +share/man/pt/man1/kalzium.1.gz +share/man/pt_BR/man1/kalzium.1.gz +share/man/ru/man1/kalzium.1.gz +share/man/sv/man1/kalzium.1.gz +share/man/uk/man1/kalzium.1.gz share/metainfo/org.kde.kalzium.appdata.xml share/qlogging-categories6/kalzium.categories diff --git a/science/libcint/Makefile b/science/libcint/Makefile index af528fdf2ec6..030c5de31ee3 100644 --- a/science/libcint/Makefile +++ b/science/libcint/Makefile @@ -1,7 +1,6 @@ PORTNAME= libcint DISTVERSIONPREFIX= v -DISTVERSION= 6.1.2 -PORTREVISION= 2 +DISTVERSION= 6.1.3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -24,7 +23,7 @@ PLIST_FILES= include/cint.h \ include/cint_funcs.h \ lib/libcint.so \ lib/libcint.so.${PORTVERSION:R:R} \ - lib/libcint.so.6.1.1 # see https://github.com/sunqm/libcint/issues/106 + lib/libcint.so.${PORTVERSION} #lib/libcint.so.${PORTVERSION} post-patch: @@ -39,4 +38,6 @@ do-test: # needs science/py-pyscf, pending https://github.com/pyscf/pyscf/issues ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test +# tests as of 6.1.3: 100% tests passed, 0 tests failed out of 2 + .include <bsd.port.mk> diff --git a/science/libcint/distinfo b/science/libcint/distinfo index 947086b18216..c2d4cf4a3f83 100644 --- a/science/libcint/distinfo +++ b/science/libcint/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1710384136 -SHA256 (sunqm-libcint-v6.1.2_GH0.tar.gz) = 8287e1eaf2b8c8e19eb7a8ea92fd73898f0884023c503b84624610400adb25c4 -SIZE (sunqm-libcint-v6.1.2_GH0.tar.gz) = 50862041 +TIMESTAMP = 1755587717 +SHA256 (sunqm-libcint-v6.1.3_GH0.tar.gz) = e4d977d4aeb4d5b87639ea57a2d2f1d5c1001f3f94e480b08c297a6cbc186f27 +SIZE (sunqm-libcint-v6.1.3_GH0.tar.gz) = 50867546 diff --git a/science/libcint/files/patch-src_c2f.h b/science/libcint/files/patch-src_c2f.h deleted file mode 100644 index b7d3deccc865..000000000000 --- a/science/libcint/files/patch-src_c2f.h +++ /dev/null @@ -1,10 +0,0 @@ ---- src/c2f.h.orig 2018-03-21 00:24:56 UTC -+++ src/c2f.h -@@ -4,6 +4,7 @@ - */ - - #include "config.h" -+#include <sys/types.h> - - #define ALL_CINT_FORTRAN_(NAME) \ - int c##NAME##_sph_(double *out, int *shls, int *atm, int *natm, \ diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile index c65f1560bb54..4ac211eda4e6 100644 --- a/science/mbdyn/Makefile +++ b/science/mbdyn/Makefile @@ -1,6 +1,6 @@ PORTNAME= mbdyn DISTVERSION= 1.7.3 -PORTREVISION= 18 +PORTREVISION= 19 CATEGORIES= science MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/ diff --git a/science/mcpl/Makefile b/science/mcpl/Makefile index 7ee2ca520278..25c22bb8a36c 100644 --- a/science/mcpl/Makefile +++ b/science/mcpl/Makefile @@ -11,6 +11,9 @@ WWW= https://mctools.github.io/mcpl/ \ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE +NOT_FOR_ARCHS= armv7 powerpc i386 +NOT_FOR_ARCHS_REASON= MCPL does not support 32 bit platforms + BROKEN_i386= compilation fails, see https://github.com/mctools/mcpl/issues/88 USES= cmake:testing diff --git a/science/molgif/Makefile b/science/molgif/Makefile index cec8591a420f..280dc2503615 100644 --- a/science/molgif/Makefile +++ b/science/molgif/Makefile @@ -1,6 +1,6 @@ PORTNAME= molgif DISTVERSION= g20180108 -PORTREVISION= 28 +PORTREVISION= 29 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/ncrystal/Makefile b/science/ncrystal/Makefile index fb63deb58062..8738797874bd 100644 --- a/science/ncrystal/Makefile +++ b/science/ncrystal/Makefile @@ -1,6 +1,6 @@ PORTNAME= ncrystal DISTVERSIONPREFIX= v -DISTVERSION= 4.2.0 +DISTVERSION= 4.2.8 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org @@ -21,9 +21,6 @@ SHEBANG_FILES= tests/scripts/* CMAKE_TESTING_ON= NCRYSTAL_ENABLE_TESTING \ NCRYSTAL_ENABLE_CORE_TEST -post-install: # workaround for https://github.com/mctools/ncrystal/issues/150 - @${RM} ${STAGEDIR}${PREFIX}/*.sh - -# tests as of 4.1.4: 54% tests passed, 37 tests failed out of 80, see https://github.com/mctools/ncrystal/issues/231 +# tests as of 4.2.6: 51% tests passed, 43 tests failed out of 88 (only py_xx tests fail) .include <bsd.port.mk> diff --git a/science/ncrystal/distinfo b/science/ncrystal/distinfo index a9c11355be17..ebf4e8a8d01a 100644 --- a/science/ncrystal/distinfo +++ b/science/ncrystal/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749700880 -SHA256 (mctools-ncrystal-v4.2.0_GH0.tar.gz) = bc01465f4e7db596ebba34df96ad744eea7cd1d2308fb2ff1ae532d0dbc50725 -SIZE (mctools-ncrystal-v4.2.0_GH0.tar.gz) = 2812384 +TIMESTAMP = 1754558330 +SHA256 (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 499e355e8cb534954101241c5af1f3d4f729aa87f4d63734b05570033a5d6dbd +SIZE (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 2822048 diff --git a/science/openmc/Makefile b/science/openmc/Makefile index 9481907cdec7..dd31d577e3d7 100644 --- a/science/openmc/Makefile +++ b/science/openmc/Makefile @@ -1,6 +1,7 @@ PORTNAME= openmc DISTVERSIONPREFIX= v DISTVERSION= 0.15.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -12,7 +13,7 @@ WWW= https://openmc.org/ \ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -BROKEN_FreeBSD_15= compilation fails with clang-19, see https://github.com/openmc-dev/openmc/issues/3183 +BROKEN= compilation fails with clang-19, see https://github.com/openmc-dev/openmc/issues/3183 BUILD_DEPENDS= xtensor>0:math/xtensor LIB_DEPENDS= libfmt.so:devel/libfmt \ diff --git a/science/openmodelica/Makefile b/science/openmodelica/Makefile index dafafc57c8da..fd76e7f0a190 100644 --- a/science/openmodelica/Makefile +++ b/science/openmodelica/Makefile @@ -1,7 +1,6 @@ PORTNAME= openmodelica DISTVERSIONPREFIX= v -DISTVERSION= 1.25.1 -PORTREVISION= 1 +DISTVERSION= 1.25.2 CATEGORIES= science cad java DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} @@ -54,15 +53,15 @@ GH_PROJECT= OpenModelica SHEBANG_GLOB= *.sh *.in *.ac GH_TUPLE= \ - OpenModelica:OMOptim:f1036f43db18c5015da259771004cfb80e08a110:OpenModelica_OMOptim/OMOptim \ - OpenModelica:OMSimulator:46fa40f:OpenModelica_OMSimulator/OMSimulator \ + OpenModelica:OMOptim:d53288b:OpenModelica_OMOptim/OMOptim \ + OpenModelica:OMSimulator:e3a3aeb:OpenModelica_OMSimulator/OMSimulator \ OpenModelica:OMSimulator-3rdParty:5c10de1648d1134a577d9284b58580a72383d89f:OpenModelica_OMSimulator_3rdParty/OMSimulator/3rdParty \ OpenModelica:OMCompiler-3rdParty:520663f:OpenModelica_OMCompiler_3rdParty/OMCompiler/3rdParty \ OpenModelica:OMSens:093ad11:OpenModelica_OMSens/OMSens \ OpenModelica:OMSens_Qt:bab329a:OpenModelica_OMSens_Qt/OMSens_Qt \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMOptim/common \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMSens_Qt/common -GH_TUPLE+= OpenModelica:OMBootstrapping:91938f0acbdc6e9ba91114376e3640ca6147b579:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake +GH_TUPLE+= OpenModelica:OMBootstrapping:04d16f7461e5401321f0f72613daf466ae2f76be:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake # this should change make program everywhere, but it doesn't, # hence the patches in OMCompiler/Compiler/runtime/CMakeLists.txt, OMEdit/OMEditLIB/Simulation/SimulationOutputWidget.cpp diff --git a/science/openmodelica/distinfo b/science/openmodelica/distinfo index 66b481d27d53..56ac7fddde4b 100644 --- a/science/openmodelica/distinfo +++ b/science/openmodelica/distinfo @@ -1,19 +1,19 @@ -TIMESTAMP = 1750120788 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = f7d819fd7b838bad5ddbbd9ee585e49053464db68c0b9a406b2f9fea400ac2e5 -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = 148275827 -SHA256 (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 11189c8ab3fb9d22ed805271ef53b9698b0d41007a1708d7a77ef074a5b20447 -SIZE (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 4022842 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = eb5fbb88b2cf6a3556c43ee4c0b446fb26a70be06ddfb4031e50636dc1af1048 -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = 92370094 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 -SHA256 (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 -SIZE (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b -SIZE (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa -SIZE (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 -SHA256 (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 1a0327dabedd09dab3aa872af194b6d4e79bacc45659ea3154076e7f1f54b2cc -SIZE (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 3328929 +TIMESTAMP = 1756357301 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = a56f60074842f8b10c05d8ad323e89937b38ecbea0c9f062858f57d5ab8dbf7c +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = 148277183 +SHA256 (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = d5012951f43e90dce03d7866d221278ee11ddfbdac4db20fe43d93adbc3748e7 +SIZE (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = 4024177 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 6192d933c258950fb0171f5d0ddac0353632d17ee99f6974ba53dd654f547e49 +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 95557541 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 +SHA256 (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 +SIZE (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b +SIZE (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa +SIZE (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 +SHA256 (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 9ac6d28be6a331dfb61a57b033f2bcf984448cd63bc1a4cd140d60c2f5c64a79 +SIZE (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 3346859 diff --git a/science/openmodelica/pkg-plist b/science/openmodelica/pkg-plist index 2f3a85526399..9c08ba4f8e0a 100644 --- a/science/openmodelica/pkg-plist +++ b/science/openmodelica/pkg-plist @@ -778,12 +778,15 @@ share/OMSimulator/schema/fmi3/fmi3Type.xsd share/OMSimulator/schema/fmi3/fmi3Unit.xsd share/OMSimulator/schema/fmi3/fmi3Variable.xsd share/OMSimulator/schema/fmi3/fmi3VariableDependency.xsd +share/OMSimulator/schema/ssp/SSPTraceabilityCommon.xsd +share/OMSimulator/schema/ssp/SimulationResourceMetaData.xsd share/OMSimulator/schema/ssp/SystemStructureCommon.xsd share/OMSimulator/schema/ssp/SystemStructureDescription.xsd share/OMSimulator/schema/ssp/SystemStructureDescription11.xsd share/OMSimulator/schema/ssp/SystemStructureParameterMapping.xsd share/OMSimulator/schema/ssp/SystemStructureParameterValues.xsd share/OMSimulator/schema/ssp/SystemStructureSignalDictionary.xsd +share/OMSimulator/schema/ssp/xlink.xsd share/OMSimulator/scripts/OMSimulatorServer.py share/cmake/ZeroMQ/ZeroMQConfig.cmake share/cmake/ZeroMQ/ZeroMQConfigVersion.cmake diff --git a/science/opensph/Makefile b/science/opensph/Makefile index 84075c2486e7..8550bb4472b0 100644 --- a/science/opensph/Makefile +++ b/science/opensph/Makefile @@ -1,6 +1,6 @@ PORTNAME= OpenSPH DISTVERSION= 0.4.1 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/packmol/Makefile b/science/packmol/Makefile index 627188fa12eb..8f1bef5e46ce 100644 --- a/science/packmol/Makefile +++ b/science/packmol/Makefile @@ -1,6 +1,6 @@ PORTNAME= packmol DISTVERSIONPREFIX= v -DISTVERSION= 21.0.4 +DISTVERSION= 21.1.0 CATEGORIES= science MAINTAINER= eduardo@FreeBSD.org diff --git a/science/packmol/distinfo b/science/packmol/distinfo index 1e7f2f2c9e84..a62a7e08f6a6 100644 --- a/science/packmol/distinfo +++ b/science/packmol/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752317019 -SHA256 (m3g-packmol-v21.0.4_GH0.tar.gz) = ca2398a6f8f2a326f52cda8e45a8818ea430a1b195fd3801d017e1a18f38fde8 -SIZE (m3g-packmol-v21.0.4_GH0.tar.gz) = 630743 +TIMESTAMP = 1755694551 +SHA256 (m3g-packmol-v21.1.0_GH0.tar.gz) = bcb64849bd490c329018210cf91375871108004ac8bf3e8cf9463e42e551fe46 +SIZE (m3g-packmol-v21.1.0_GH0.tar.gz) = 634772 diff --git a/science/paje/Makefile b/science/paje/Makefile index 6c6a554a8b5b..0d73a91fe8bf 100644 --- a/science/paje/Makefile +++ b/science/paje/Makefile @@ -1,6 +1,6 @@ PORTNAME= paje PORTVERSION= 1.97 -PORTREVISION= 12 +PORTREVISION= 13 CATEGORIES= science gnustep MASTER_SITES= SF/${PORTNAME}/Releases DISTNAME= Paje_${PORTVERSION} diff --git a/science/py-asdf/Makefile b/science/py-asdf/Makefile index 8efabf947d4c..3986edee3d15 100644 --- a/science/py-asdf/Makefile +++ b/science/py-asdf/Makefile @@ -1,5 +1,5 @@ PORTNAME= asdf -PORTVERSION= 4.2.0 +PORTVERSION= 4.3.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-asdf/distinfo b/science/py-asdf/distinfo index 6de3b3412bd5..f3a2707208d2 100644 --- a/science/py-asdf/distinfo +++ b/science/py-asdf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1748831252 -SHA256 (asdf-4.2.0.tar.gz) = cba00a10cde18deb20100e001fe41022f5c0cda02720dda9f716fb2150a46cf7 -SIZE (asdf-4.2.0.tar.gz) = 892353 +TIMESTAMP = 1753265788 +SHA256 (asdf-4.3.0.tar.gz) = 961d75fb1f1c4868b4533f885655b7ea9a3f0d257c65b49d728da53fe6df087d +SIZE (asdf-4.3.0.tar.gz) = 897816 diff --git a/science/py-eccodes/Makefile b/science/py-eccodes/Makefile index 5f7093dce593..044eb813edc2 100644 --- a/science/py-eccodes/Makefile +++ b/science/py-eccodes/Makefile @@ -1,5 +1,5 @@ PORTNAME= eccodes -PORTVERSION= 2.42.0 +PORTVERSION= 2.43.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-eccodes/distinfo b/science/py-eccodes/distinfo index 21954c2072d6..e37fc89abc25 100644 --- a/science/py-eccodes/distinfo +++ b/science/py-eccodes/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750954222 -SHA256 (eccodes-2.42.0.tar.gz) = 0abb2bc6c6f4e83749c4e9c313d5428c62b15dc6c5b47d2807943e3a5ffd5291 -SIZE (eccodes-2.42.0.tar.gz) = 2268756 +TIMESTAMP = 1753796092 +SHA256 (eccodes-2.43.0.tar.gz) = b99c41aaa64b20291452297a3d513e0b08cc96bcedfe364d8f58348159c48faa +SIZE (eccodes-2.43.0.tar.gz) = 2269307 diff --git a/science/py-eccodes/files/patch-setup.py b/science/py-eccodes/files/patch-setup.py new file mode 100644 index 000000000000..8a15aeac70e2 --- /dev/null +++ b/science/py-eccodes/files/patch-setup.py @@ -0,0 +1,10 @@ +--- setup.py.orig 2025-07-25 10:03:25 UTC ++++ setup.py +@@ -90,7 +90,6 @@ install_requires += [ + "attrs", + "cffi", + "findlibs", +- "eccodeslib;platform_system!='Windows'", + ] + + setuptools.setup( diff --git a/science/py-ncrystal/Makefile b/science/py-ncrystal/Makefile index 16b71cb75d5e..c6a90d0c973f 100644 --- a/science/py-ncrystal/Makefile +++ b/science/py-ncrystal/Makefile @@ -1,6 +1,6 @@ PORTNAME= ncrystal DISTVERSIONPREFIX= v -DISTVERSION= 4.2.0 +DISTVERSION= 4.2.8 CATEGORIES= science # physics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -32,7 +32,7 @@ post-install: # strip binary #@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/NCrystal/ncrystal_pyinst_data/lib/libNCrystal.so -do-test: # the third test fails for an unknown reason +do-test: @cd ${TEST_WRKSRC} && \ ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m NCrystal.test all diff --git a/science/py-ncrystal/distinfo b/science/py-ncrystal/distinfo index a23e154ff514..335765086002 100644 --- a/science/py-ncrystal/distinfo +++ b/science/py-ncrystal/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749705869 -SHA256 (mctools-ncrystal-v4.2.0_GH0.tar.gz) = bc01465f4e7db596ebba34df96ad744eea7cd1d2308fb2ff1ae532d0dbc50725 -SIZE (mctools-ncrystal-v4.2.0_GH0.tar.gz) = 2812384 +TIMESTAMP = 1754559207 +SHA256 (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 499e355e8cb534954101241c5af1f3d4f729aa87f4d63734b05570033a5d6dbd +SIZE (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 2822048 diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile index e28c1d3cd27c..c55d7b2e49e3 100644 --- a/science/py-qiskit/Makefile +++ b/science/py-qiskit/Makefile @@ -1,6 +1,5 @@ PORTNAME= qiskit -DISTVERSION= 2.0.0 -PORTREVISION= 2 +DISTVERSION= 2.1.1 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-qiskit/Makefile.crates b/science/py-qiskit/Makefile.crates index ff8fa8febab4..790b3238b85a 100644 --- a/science/py-qiskit/Makefile.crates +++ b/science/py-qiskit/Makefile.crates @@ -1,5 +1,5 @@ -CARGO_CRATES= ahash-0.7.8 \ - ahash-0.8.11 \ +CARGO_CRATES= ahash-0.7.0 \ + ahash-0.8.12 \ aho-corasick-1.1.3 \ allocator-api2-0.2.21 \ anstream-0.6.18 \ @@ -10,15 +10,16 @@ CARGO_CRATES= ahash-0.7.8 \ approx-0.5.1 \ ariadne-0.3.0 \ autocfg-1.4.0 \ + bincode-1.3.3 \ bitfield-struct-0.9.5 \ bitflags-1.3.2 \ bitflags-2.9.0 \ block-buffer-0.10.4 \ boolenum-0.1.0 \ - bytemuck-1.22.0 \ + bytemuck-1.23.0 \ bytemuck_derive-1.8.1 \ byteorder-1.5.0 \ - cbindgen-0.28.0 \ + cbindgen-0.29.0 \ cfg-if-1.0.0 \ clap-4.5.31 \ clap_builder-4.5.31 \ @@ -66,19 +67,20 @@ CARGO_CRATES= ahash-0.7.8 \ getrandom-0.2.15 \ getrandom-0.3.1 \ half-2.4.1 \ + hash32-0.3.1 \ hashbrown-0.12.3 \ hashbrown-0.14.5 \ hashbrown-0.15.2 \ - heck-0.4.1 \ + heapless-0.8.0 \ heck-0.5.0 \ - hermit-abi-0.4.0 \ - indexmap-2.7.1 \ + hermit-abi-0.5.1 \ + indexmap-2.9.0 \ indoc-2.0.6 \ - is-terminal-0.4.15 \ + is-terminal-0.4.16 \ is_terminal_polyfill-1.70.1 \ itertools-0.10.5 \ itertools-0.11.0 \ - itertools-0.13.0 \ + itertools-0.14.0 \ itoa-1.0.15 \ lazy_static-1.5.0 \ libc-0.2.170 \ @@ -90,6 +92,7 @@ CARGO_CRATES= ahash-0.7.8 \ matrixmultiply-0.3.9 \ memchr-2.7.4 \ memoffset-0.9.1 \ + minimal-lexical-0.2.1 \ nalgebra-0.33.2 \ nalgebra-macros-0.2.2 \ nano-gemm-0.1.2 \ @@ -101,43 +104,44 @@ CARGO_CRATES= ahash-0.7.8 \ nano-gemm-f64-0.1.0 \ ndarray-0.16.1 \ ndarray-einsum-0.8.0 \ - npyz-0.8.3 \ + nom-7.1.3 \ + nom-unicode-0.3.0 \ + npyz-0.8.4 \ num-bigint-0.4.6 \ num-complex-0.4.6 \ num-integer-0.1.46 \ num-rational-0.4.2 \ num-traits-0.2.19 \ - numpy-0.23.0 \ - once_cell-1.20.3 \ + numpy-0.25.0 \ + once_cell-1.21.3 \ oq3_lexer-0.7.0 \ oq3_parser-0.7.0 \ oq3_semantics-0.7.0 \ oq3_source_file-0.7.0 \ oq3_syntax-0.7.0 \ paste-1.0.15 \ - pest-2.7.15 \ - pest_derive-2.7.15 \ - pest_generator-2.7.15 \ - pest_meta-2.7.15 \ + pest-2.8.0 \ + pest_derive-2.8.0 \ + pest_generator-2.8.0 \ + pest_meta-2.8.0 \ petgraph-0.6.5 \ petgraph-0.7.1 \ portable-atomic-1.11.0 \ portable-atomic-util-0.2.4 \ - ppv-lite86-0.2.20 \ + ppv-lite86-0.2.21 \ priority-queue-2.1.2 \ proc-macro-error-1.0.4 \ proc-macro-error-attr-1.0.4 \ proc-macro2-1.0.94 \ pulp-0.18.22 \ - pulp-0.21.4 \ + pulp-0.21.5 \ pulp-macro-0.1.1 \ py_literal-0.4.0 \ - pyo3-0.23.5 \ - pyo3-build-config-0.23.5 \ - pyo3-build-config-0.24.0 \ - pyo3-ffi-0.23.5 \ - pyo3-macros-0.23.5 \ - pyo3-macros-backend-0.23.5 \ + pyo3-0.25.0 \ + pyo3-build-config-0.25.0 \ + pyo3-ffi-0.25.0 \ + pyo3-macros-0.25.0 \ + pyo3-macros-backend-0.25.0 \ quote-1.0.39 \ ra_ap_limit-0.0.188 \ rand-0.8.5 \ @@ -160,9 +164,10 @@ CARGO_CRATES= ahash-0.7.8 \ regex-automata-0.4.9 \ regex-syntax-0.8.5 \ rowan-0.15.15 \ + rstar-0.12.2 \ rustc-hash-1.1.0 \ rustc-hash-2.1.1 \ - rustiq-core-0.0.10 \ + rustiq-core-0.0.11 \ rustix-0.38.44 \ rustversion-1.0.20 \ rustworkx-core-0.16.0 \ @@ -170,14 +175,15 @@ CARGO_CRATES= ahash-0.7.8 \ safe_arch-0.7.4 \ same-file-1.0.6 \ seq-macro-0.3.6 \ - serde-1.0.218 \ - serde_derive-1.0.218 \ + serde-1.0.219 \ + serde_derive-1.0.219 \ serde_json-1.0.140 \ serde_spanned-0.6.8 \ sha2-0.10.8 \ simba-0.9.0 \ - smallvec-1.14.0 \ + smallvec-1.15.0 \ smol_str-0.2.2 \ + stable_deref_trait-1.2.0 \ strsim-0.11.1 \ syn-1.0.109 \ syn-2.0.99 \ @@ -202,6 +208,7 @@ CARGO_CRATES= ahash-0.7.8 \ unicode-xid-0.2.6 \ unindent-0.2.4 \ utf8parse-0.2.2 \ + uuid-1.17.0 \ version_check-0.9.5 \ walkdir-2.5.0 \ wasi-0.11.0+wasi-snapshot-preview1 \ @@ -232,7 +239,5 @@ CARGO_CRATES= ahash-0.7.8 \ xshell-0.2.7 \ xshell-macros-0.2.7 \ yansi-0.5.1 \ - zerocopy-0.7.35 \ - zerocopy-0.8.21 \ - zerocopy-derive-0.7.35 \ - zerocopy-derive-0.8.21 + zerocopy-0.8.25 \ + zerocopy-derive-0.8.25 diff --git a/science/py-qiskit/distinfo b/science/py-qiskit/distinfo index 5614a20c079c..f1f98a1c4ce5 100644 --- a/science/py-qiskit/distinfo +++ b/science/py-qiskit/distinfo @@ -1,8 +1,8 @@ -TIMESTAMP = 1745542321 -SHA256 (rust/crates/ahash-0.7.8.crate) = 891477e0c6a8957309ee5c45a6368af3ae14bb510732d2684ffa19af310920f9 -SIZE (rust/crates/ahash-0.7.8.crate) = 38550 -SHA256 (rust/crates/ahash-0.8.11.crate) = e89da841a80418a9b391ebaea17f5c112ffaaa96f621d2c285b5174da76b9011 -SIZE (rust/crates/ahash-0.8.11.crate) = 43607 +TIMESTAMP = 1753430083 +SHA256 (rust/crates/ahash-0.7.0.crate) = efa60d2eadd8b12a996add391db32bd1153eac697ba4869660c0016353611426 +SIZE (rust/crates/ahash-0.7.0.crate) = 55813 +SHA256 (rust/crates/ahash-0.8.12.crate) = 5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75 +SIZE (rust/crates/ahash-0.8.12.crate) = 43413 SHA256 (rust/crates/aho-corasick-1.1.3.crate) = 8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916 SIZE (rust/crates/aho-corasick-1.1.3.crate) = 183311 SHA256 (rust/crates/allocator-api2-0.2.21.crate) = 683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923 @@ -23,6 +23,8 @@ SHA256 (rust/crates/ariadne-0.3.0.crate) = 72fe02fc62033df9ba41cba57ee19acf5e742 SIZE (rust/crates/ariadne-0.3.0.crate) = 21829 SHA256 (rust/crates/autocfg-1.4.0.crate) = ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26 SIZE (rust/crates/autocfg-1.4.0.crate) = 17712 +SHA256 (rust/crates/bincode-1.3.3.crate) = b1f45e9417d87227c7a56d22e471c6206462cba514c7590c09aff4cf6d1ddcad +SIZE (rust/crates/bincode-1.3.3.crate) = 28958 SHA256 (rust/crates/bitfield-struct-0.9.5.crate) = b2869c63ccf4f8bf0d485070b880e60e097fb7aeea80ee82a0a94a957e372a0b SIZE (rust/crates/bitfield-struct-0.9.5.crate) = 15953 SHA256 (rust/crates/bitflags-1.3.2.crate) = bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a @@ -33,14 +35,14 @@ SHA256 (rust/crates/block-buffer-0.10.4.crate) = 3078c7629b62d3f0439517fa394996a SIZE (rust/crates/block-buffer-0.10.4.crate) = 10538 SHA256 (rust/crates/boolenum-0.1.0.crate) = a6c8abd585d7026df20a9ae12982127ba5e81cc7a09397b957e71659da8c5de8 SIZE (rust/crates/boolenum-0.1.0.crate) = 3444 -SHA256 (rust/crates/bytemuck-1.22.0.crate) = b6b1fc10dbac614ebc03540c9dbd60e83887fda27794998c6528f1782047d540 -SIZE (rust/crates/bytemuck-1.22.0.crate) = 52451 +SHA256 (rust/crates/bytemuck-1.23.0.crate) = 9134a6ef01ce4b366b50689c94f82c14bc72bc5d0386829828a2e2752ef7958c +SIZE (rust/crates/bytemuck-1.23.0.crate) = 52534 SHA256 (rust/crates/bytemuck_derive-1.8.1.crate) = 3fa76293b4f7bb636ab88fd78228235b5248b4d05cc589aed610f954af5d7c7a SIZE (rust/crates/bytemuck_derive-1.8.1.crate) = 23100 SHA256 (rust/crates/byteorder-1.5.0.crate) = 1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b SIZE (rust/crates/byteorder-1.5.0.crate) = 23288 -SHA256 (rust/crates/cbindgen-0.28.0.crate) = eadd868a2ce9ca38de7eeafdcec9c7065ef89b42b32f0839278d55f35c54d1ff -SIZE (rust/crates/cbindgen-0.28.0.crate) = 223401 +SHA256 (rust/crates/cbindgen-0.29.0.crate) = 975982cdb7ad6a142be15bdf84aea7ec6a9e5d4d797c004d43185b24cfe4e684 +SIZE (rust/crates/cbindgen-0.29.0.crate) = 226905 SHA256 (rust/crates/cfg-if-1.0.0.crate) = baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd SIZE (rust/crates/cfg-if-1.0.0.crate) = 7934 SHA256 (rust/crates/clap-4.5.31.crate) = 027bb0d98429ae334a8698531da7077bdf906419543a35a55c2cb1b66437d767 @@ -135,32 +137,34 @@ SHA256 (rust/crates/getrandom-0.3.1.crate) = 43a49c392881ce6d5c3b8cb70f98717b7c0 SIZE (rust/crates/getrandom-0.3.1.crate) = 42449 SHA256 (rust/crates/half-2.4.1.crate) = 6dd08c532ae367adf81c312a4580bc67f1d0fe8bc9c460520283f4c0ff277888 SIZE (rust/crates/half-2.4.1.crate) = 50892 +SHA256 (rust/crates/hash32-0.3.1.crate) = 47d60b12902ba28e2730cd37e95b8c9223af2808df9e902d4df49588d1470606 +SIZE (rust/crates/hash32-0.3.1.crate) = 10273 SHA256 (rust/crates/hashbrown-0.12.3.crate) = 8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888 SIZE (rust/crates/hashbrown-0.12.3.crate) = 102968 SHA256 (rust/crates/hashbrown-0.14.5.crate) = e5274423e17b7c9fc20b6e7e208532f9b19825d82dfd615708b70edd83df41f1 SIZE (rust/crates/hashbrown-0.14.5.crate) = 141498 SHA256 (rust/crates/hashbrown-0.15.2.crate) = bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289 SIZE (rust/crates/hashbrown-0.15.2.crate) = 138478 -SHA256 (rust/crates/heck-0.4.1.crate) = 95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8 -SIZE (rust/crates/heck-0.4.1.crate) = 11567 +SHA256 (rust/crates/heapless-0.8.0.crate) = 0bfb9eb618601c89945a70e254898da93b13be0388091d42117462b265bb3fad +SIZE (rust/crates/heapless-0.8.0.crate) = 77802 SHA256 (rust/crates/heck-0.5.0.crate) = 2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea SIZE (rust/crates/heck-0.5.0.crate) = 11517 -SHA256 (rust/crates/hermit-abi-0.4.0.crate) = fbf6a919d6cf397374f7dfeeea91d974c7c0a7221d0d0f4f20d859d329e53fcc -SIZE (rust/crates/hermit-abi-0.4.0.crate) = 16310 -SHA256 (rust/crates/indexmap-2.7.1.crate) = 8c9c992b02b5b4c94ea26e32fe5bccb7aa7d9f390ab5c1221ff895bc7ea8b652 -SIZE (rust/crates/indexmap-2.7.1.crate) = 88644 +SHA256 (rust/crates/hermit-abi-0.5.1.crate) = f154ce46856750ed433c8649605bf7ed2de3bc35fd9d2a9f30cddd873c80cb08 +SIZE (rust/crates/hermit-abi-0.5.1.crate) = 17549 +SHA256 (rust/crates/indexmap-2.9.0.crate) = cea70ddb795996207ad57735b50c5982d8844f38ba9ee5f1aedcfb708a2aa11e +SIZE (rust/crates/indexmap-2.9.0.crate) = 91214 SHA256 (rust/crates/indoc-2.0.6.crate) = f4c7245a08504955605670dbf141fceab975f15ca21570696aebe9d2e71576bd SIZE (rust/crates/indoc-2.0.6.crate) = 17164 -SHA256 (rust/crates/is-terminal-0.4.15.crate) = e19b23d53f35ce9f56aebc7d1bb4e6ac1e9c0db7ac85c8d1760c04379edced37 -SIZE (rust/crates/is-terminal-0.4.15.crate) = 7770 +SHA256 (rust/crates/is-terminal-0.4.16.crate) = e04d7f318608d35d4b61ddd75cbdaee86b023ebe2bd5a66ee0915f0bf93095a9 +SIZE (rust/crates/is-terminal-0.4.16.crate) = 7811 SHA256 (rust/crates/is_terminal_polyfill-1.70.1.crate) = 7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf SIZE (rust/crates/is_terminal_polyfill-1.70.1.crate) = 7492 SHA256 (rust/crates/itertools-0.10.5.crate) = b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473 SIZE (rust/crates/itertools-0.10.5.crate) = 115354 SHA256 (rust/crates/itertools-0.11.0.crate) = b1c173a5686ce8bfa551b3563d0c2170bf24ca44da99c7ca4bfdab5418c3fe57 SIZE (rust/crates/itertools-0.11.0.crate) = 125074 -SHA256 (rust/crates/itertools-0.13.0.crate) = 413ee7dfc52ee1a4949ceeb7dbc8a33f2d6c088194d9f922fb8318faf1f01186 -SIZE (rust/crates/itertools-0.13.0.crate) = 146261 +SHA256 (rust/crates/itertools-0.14.0.crate) = 2b192c782037fadd9cfa75548310488aabdbf3d2da73885b31bd0abd03351285 +SIZE (rust/crates/itertools-0.14.0.crate) = 152715 SHA256 (rust/crates/itoa-1.0.15.crate) = 4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c SIZE (rust/crates/itoa-1.0.15.crate) = 11231 SHA256 (rust/crates/lazy_static-1.5.0.crate) = bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe @@ -183,6 +187,8 @@ SHA256 (rust/crates/memchr-2.7.4.crate) = 78ca9ab1a0babb1e7d5695e3530886289c18cf SIZE (rust/crates/memchr-2.7.4.crate) = 96670 SHA256 (rust/crates/memoffset-0.9.1.crate) = 488016bfae457b036d996092f6cb448677611ce4449e970ceaf42695203f218a SIZE (rust/crates/memoffset-0.9.1.crate) = 9032 +SHA256 (rust/crates/minimal-lexical-0.2.1.crate) = 68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a +SIZE (rust/crates/minimal-lexical-0.2.1.crate) = 94841 SHA256 (rust/crates/nalgebra-0.33.2.crate) = 26aecdf64b707efd1310e3544d709c5c0ac61c13756046aaaba41be5c4f66a3b SIZE (rust/crates/nalgebra-0.33.2.crate) = 385768 SHA256 (rust/crates/nalgebra-macros-0.2.2.crate) = 254a5372af8fc138e36684761d3c0cdb758a4410e938babcff1c860ce14ddbfc @@ -205,8 +211,12 @@ SHA256 (rust/crates/ndarray-0.16.1.crate) = 882ed72dce9365842bf196bdeedf5055305f SIZE (rust/crates/ndarray-0.16.1.crate) = 291026 SHA256 (rust/crates/ndarray-einsum-0.8.0.crate) = f4b2d52dfff9b24d072b6080eab1587cbd54ae24da7b8370072c3a84db221e05 SIZE (rust/crates/ndarray-einsum-0.8.0.crate) = 34449 -SHA256 (rust/crates/npyz-0.8.3.crate) = 13f27ea175875c472b3df61ece89a6d6ef4e0627f43704e400c782f174681ebd -SIZE (rust/crates/npyz-0.8.3.crate) = 75073 +SHA256 (rust/crates/nom-7.1.3.crate) = d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a +SIZE (rust/crates/nom-7.1.3.crate) = 117570 +SHA256 (rust/crates/nom-unicode-0.3.0.crate) = a5c03a4d71ab9740c752c165329e9df13a808093b146dfbef6170ac260771ffe +SIZE (rust/crates/nom-unicode-0.3.0.crate) = 9378 +SHA256 (rust/crates/npyz-0.8.4.crate) = 9f0e759e014e630f90af745101b614f761306ddc541681e546649068e25ec1b9 +SIZE (rust/crates/npyz-0.8.4.crate) = 77220 SHA256 (rust/crates/num-bigint-0.4.6.crate) = a5e44f723f1133c9deac646763579fdb3ac745e418f2a7af9cd0c431da1f20b9 SIZE (rust/crates/num-bigint-0.4.6.crate) = 102801 SHA256 (rust/crates/num-complex-0.4.6.crate) = 73f88a1307638156682bada9d7604135552957b7818057dcef22705b4d509495 @@ -217,10 +227,10 @@ SHA256 (rust/crates/num-rational-0.4.2.crate) = f83d14da390562dca69fc84082e73e54 SIZE (rust/crates/num-rational-0.4.2.crate) = 28159 SHA256 (rust/crates/num-traits-0.2.19.crate) = 071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841 SIZE (rust/crates/num-traits-0.2.19.crate) = 51631 -SHA256 (rust/crates/numpy-0.23.0.crate) = b94caae805f998a07d33af06e6a3891e38556051b8045c615470a71590e13e78 -SIZE (rust/crates/numpy-0.23.0.crate) = 79034 -SHA256 (rust/crates/once_cell-1.20.3.crate) = 945462a4b81e43c4e3ba96bd7b49d834c6f61198356aa858733bc4acf3cbe62e -SIZE (rust/crates/once_cell-1.20.3.crate) = 33456 +SHA256 (rust/crates/numpy-0.25.0.crate) = 29f1dee9aa8d3f6f8e8b9af3803006101bb3653866ef056d530d53ae68587191 +SIZE (rust/crates/numpy-0.25.0.crate) = 81623 +SHA256 (rust/crates/once_cell-1.21.3.crate) = 42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d +SIZE (rust/crates/once_cell-1.21.3.crate) = 34534 SHA256 (rust/crates/oq3_lexer-0.7.0.crate) = a27bbc91e3e9d6193a44aac8f5d62c1507c41669af71a4e7e0ef66fd6470e960 SIZE (rust/crates/oq3_lexer-0.7.0.crate) = 16877 SHA256 (rust/crates/oq3_parser-0.7.0.crate) = 9a72022fcb414e8a0912920a1cf46417b6aa95f19d4b38778df7450f8a3c17fa @@ -233,14 +243,14 @@ SHA256 (rust/crates/oq3_syntax-0.7.0.crate) = 42c754ce1d9da28d6c0334c212d64b5212 SIZE (rust/crates/oq3_syntax-0.7.0.crate) = 63066 SHA256 (rust/crates/paste-1.0.15.crate) = 57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a SIZE (rust/crates/paste-1.0.15.crate) = 18374 -SHA256 (rust/crates/pest-2.7.15.crate) = 8b7cafe60d6cf8e62e1b9b2ea516a089c008945bb5a275416789e7db0bc199dc -SIZE (rust/crates/pest-2.7.15.crate) = 127895 -SHA256 (rust/crates/pest_derive-2.7.15.crate) = 816518421cfc6887a0d62bf441b6ffb4536fcc926395a69e1a85852d4363f57e -SIZE (rust/crates/pest_derive-2.7.15.crate) = 40745 -SHA256 (rust/crates/pest_generator-2.7.15.crate) = 7d1396fd3a870fc7838768d171b4616d5c91f6cc25e377b673d714567d99377b -SIZE (rust/crates/pest_generator-2.7.15.crate) = 18417 -SHA256 (rust/crates/pest_meta-2.7.15.crate) = e1e58089ea25d717bfd31fb534e4f3afcc2cc569c70de3e239778991ea3b7dea -SIZE (rust/crates/pest_meta-2.7.15.crate) = 42121 +SHA256 (rust/crates/pest-2.8.0.crate) = 198db74531d58c70a361c42201efde7e2591e976d518caf7662a47dc5720e7b6 +SIZE (rust/crates/pest-2.8.0.crate) = 128955 +SHA256 (rust/crates/pest_derive-2.8.0.crate) = d725d9cfd79e87dccc9341a2ef39d1b6f6353d68c4b33c177febbe1a402c97c5 +SIZE (rust/crates/pest_derive-2.8.0.crate) = 42196 +SHA256 (rust/crates/pest_generator-2.8.0.crate) = db7d01726be8ab66ab32f9df467ae8b1148906685bbe75c82d1e65d7f5b3f841 +SIZE (rust/crates/pest_generator-2.8.0.crate) = 18617 +SHA256 (rust/crates/pest_meta-2.8.0.crate) = 7f9f832470494906d1fca5329f8ab5791cc60beb230c74815dff541cbd2b5ca0 +SIZE (rust/crates/pest_meta-2.8.0.crate) = 42931 SHA256 (rust/crates/petgraph-0.6.5.crate) = b4c5cc86750666a3ed20bdaf5ca2a0344f9c67674cae0515bec2da16fbaa47db SIZE (rust/crates/petgraph-0.6.5.crate) = 710970 SHA256 (rust/crates/petgraph-0.7.1.crate) = 3672b37090dbd86368a4145bc067582552b29c27377cad4e0a306c97f9bd7772 @@ -249,8 +259,8 @@ SHA256 (rust/crates/portable-atomic-1.11.0.crate) = 350e9b48cbc6b0e028b0473b1144 SIZE (rust/crates/portable-atomic-1.11.0.crate) = 181258 SHA256 (rust/crates/portable-atomic-util-0.2.4.crate) = d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507 SIZE (rust/crates/portable-atomic-util-0.2.4.crate) = 47043 -SHA256 (rust/crates/ppv-lite86-0.2.20.crate) = 77957b295656769bb8ad2b6a6b09d897d94f05c41b069aede1fcdaa675eaea04 -SIZE (rust/crates/ppv-lite86-0.2.20.crate) = 22478 +SHA256 (rust/crates/ppv-lite86-0.2.21.crate) = 85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9 +SIZE (rust/crates/ppv-lite86-0.2.21.crate) = 22522 SHA256 (rust/crates/priority-queue-2.1.2.crate) = 090ded312ed32a928fb49cb91ab4db6523ae3767225e61fbf6ceaaec3664ed26 SIZE (rust/crates/priority-queue-2.1.2.crate) = 36557 SHA256 (rust/crates/proc-macro-error-1.0.4.crate) = da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c @@ -261,24 +271,22 @@ SHA256 (rust/crates/proc-macro2-1.0.94.crate) = a31971752e70b8b2686d7e46ec17fb38 SIZE (rust/crates/proc-macro2-1.0.94.crate) = 52391 SHA256 (rust/crates/pulp-0.18.22.crate) = a0a01a0dc67cf4558d279f0c25b0962bd08fc6dec0137699eae304103e882fe6 SIZE (rust/crates/pulp-0.18.22.crate) = 117838 -SHA256 (rust/crates/pulp-0.21.4.crate) = 95fb7a99b37aaef4c7dd2fd15a819eb8010bfc7a2c2155230d51f497316cad6d -SIZE (rust/crates/pulp-0.21.4.crate) = 135569 +SHA256 (rust/crates/pulp-0.21.5.crate) = 96b86df24f0a7ddd5e4b95c94fc9ed8a98f1ca94d3b01bdce2824097e7835907 +SIZE (rust/crates/pulp-0.21.5.crate) = 136353 SHA256 (rust/crates/pulp-macro-0.1.1.crate) = d315b3197b780e4873bc0e11251cb56a33f65a6032a3d39b8d1405c255513766 SIZE (rust/crates/pulp-macro-0.1.1.crate) = 3268 SHA256 (rust/crates/py_literal-0.4.0.crate) = 102df7a3d46db9d3891f178dcc826dc270a6746277a9ae6436f8d29fd490a8e1 SIZE (rust/crates/py_literal-0.4.0.crate) = 16747 -SHA256 (rust/crates/pyo3-0.23.5.crate) = 7778bffd85cf38175ac1f545509665d0b9b92a198ca7941f131f85f7a4f9a872 -SIZE (rust/crates/pyo3-0.23.5.crate) = 1088533 -SHA256 (rust/crates/pyo3-build-config-0.23.5.crate) = 94f6cbe86ef3bf18998d9df6e0f3fc1050a8c5efa409bf712e661a4366e010fb -SIZE (rust/crates/pyo3-build-config-0.23.5.crate) = 33885 -SHA256 (rust/crates/pyo3-build-config-0.24.0.crate) = e9b6c2b34cf71427ea37c7001aefbaeb85886a074795e35f161f5aecc7620a7a -SIZE (rust/crates/pyo3-build-config-0.24.0.crate) = 33982 -SHA256 (rust/crates/pyo3-ffi-0.23.5.crate) = e9f1b4c431c0bb1c8fb0a338709859eed0d030ff6daa34368d3b152a63dfdd8d -SIZE (rust/crates/pyo3-ffi-0.23.5.crate) = 74867 -SHA256 (rust/crates/pyo3-macros-0.23.5.crate) = fbc2201328f63c4710f68abdf653c89d8dbc2858b88c5d88b0ff38a75288a9da -SIZE (rust/crates/pyo3-macros-0.23.5.crate) = 8856 -SHA256 (rust/crates/pyo3-macros-backend-0.23.5.crate) = fca6726ad0f3da9c9de093d6f116a93c1a38e417ed73bf138472cf4064f72028 -SIZE (rust/crates/pyo3-macros-backend-0.23.5.crate) = 70938 +SHA256 (rust/crates/pyo3-0.25.0.crate) = f239d656363bcee73afef85277f1b281e8ac6212a1d42aa90e55b90ed43c47a4 +SIZE (rust/crates/pyo3-0.25.0.crate) = 1120850 +SHA256 (rust/crates/pyo3-build-config-0.25.0.crate) = 755ea671a1c34044fa165247aaf6f419ca39caa6003aee791a0df2713d8f1b6d +SIZE (rust/crates/pyo3-build-config-0.25.0.crate) = 34122 +SHA256 (rust/crates/pyo3-ffi-0.25.0.crate) = fc95a2e67091e44791d4ea300ff744be5293f394f1bafd9f78c080814d35956e +SIZE (rust/crates/pyo3-ffi-0.25.0.crate) = 77991 +SHA256 (rust/crates/pyo3-macros-0.25.0.crate) = a179641d1b93920829a62f15e87c0ed791b6c8db2271ba0fd7c2686090510214 +SIZE (rust/crates/pyo3-macros-0.25.0.crate) = 8876 +SHA256 (rust/crates/pyo3-macros-backend-0.25.0.crate) = 9dff85ebcaab8c441b0e3f7ae40a6963ecea8a9f5e74f647e33fcf5ec9a1e89e +SIZE (rust/crates/pyo3-macros-backend-0.25.0.crate) = 75089 SHA256 (rust/crates/quote-1.0.39.crate) = c1f1914ce909e1658d9907913b4b91947430c7d9be598b15a1912935b8c04801 SIZE (rust/crates/quote-1.0.39.crate) = 31206 SHA256 (rust/crates/ra_ap_limit-0.0.188.crate) = 92d33758724f997689f84146e5401e28d875a061804f861f113696f44f5232aa @@ -323,12 +331,14 @@ SHA256 (rust/crates/regex-syntax-0.8.5.crate) = 2b15c43186be67a4fd63bee50d0303af SIZE (rust/crates/regex-syntax-0.8.5.crate) = 357541 SHA256 (rust/crates/rowan-0.15.15.crate) = 32a58fa8a7ccff2aec4f39cc45bf5f985cec7125ab271cf681c279fd00192b49 SIZE (rust/crates/rowan-0.15.15.crate) = 39971 +SHA256 (rust/crates/rstar-0.12.2.crate) = 421400d13ccfd26dfa5858199c30a5d76f9c54e0dba7575273025b43c5175dbb +SIZE (rust/crates/rstar-0.12.2.crate) = 43756 SHA256 (rust/crates/rustc-hash-1.1.0.crate) = 08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2 SIZE (rust/crates/rustc-hash-1.1.0.crate) = 9331 SHA256 (rust/crates/rustc-hash-2.1.1.crate) = 357703d41365b4b27c590e3ed91eabb1b663f07c4c084095e60cbed4362dff0d SIZE (rust/crates/rustc-hash-2.1.1.crate) = 14154 -SHA256 (rust/crates/rustiq-core-0.0.10.crate) = 666b580cb45b60a39f5a17b284bbe8343cfcd67929931729b4afee19ec94d308 -SIZE (rust/crates/rustiq-core-0.0.10.crate) = 40292 +SHA256 (rust/crates/rustiq-core-0.0.11.crate) = 51bfa802a80a4fa591941e4caaf2d6d7793ae3ffd307022afe0739453fae07a6 +SIZE (rust/crates/rustiq-core-0.0.11.crate) = 41963 SHA256 (rust/crates/rustix-0.38.44.crate) = fdb5bc1ae2baa591800df16c9ca78619bf65c0488b41b96ccec5d11220d8c154 SIZE (rust/crates/rustix-0.38.44.crate) = 379347 SHA256 (rust/crates/rustversion-1.0.20.crate) = eded382c5f5f786b989652c49544c4877d9f015cc22e145a5ea8ea66c2921cd2 @@ -343,10 +353,10 @@ SHA256 (rust/crates/same-file-1.0.6.crate) = 93fc1dc3aaa9bfed95e02e6eadabb4baf7e SIZE (rust/crates/same-file-1.0.6.crate) = 10183 SHA256 (rust/crates/seq-macro-0.3.6.crate) = 1bc711410fbe7399f390ca1c3b60ad0f53f80e95c5eb935e52268a0e2cd49acc SIZE (rust/crates/seq-macro-0.3.6.crate) = 16031 -SHA256 (rust/crates/serde-1.0.218.crate) = e8dfc9d19bdbf6d17e22319da49161d5d0108e4188e8b680aef6299eed22df60 -SIZE (rust/crates/serde-1.0.218.crate) = 78968 -SHA256 (rust/crates/serde_derive-1.0.218.crate) = f09503e191f4e797cb8aac08e9a4a4695c5edf6a2e70e376d961ddd5c969f82b -SIZE (rust/crates/serde_derive-1.0.218.crate) = 57782 +SHA256 (rust/crates/serde-1.0.219.crate) = 5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6 +SIZE (rust/crates/serde-1.0.219.crate) = 78983 +SHA256 (rust/crates/serde_derive-1.0.219.crate) = 5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00 +SIZE (rust/crates/serde_derive-1.0.219.crate) = 57798 SHA256 (rust/crates/serde_json-1.0.140.crate) = 20068b6e96dc6c9bd23e01df8827e6c7e1f2fddd43c21810382803c136b99373 SIZE (rust/crates/serde_json-1.0.140.crate) = 154852 SHA256 (rust/crates/serde_spanned-0.6.8.crate) = 87607cb1398ed59d48732e575a4c28a7a8ebf2454b964fe3f224f2afc07909e1 @@ -355,10 +365,12 @@ SHA256 (rust/crates/sha2-0.10.8.crate) = 793db75ad2bcafc3ffa7c68b215fee268f53798 SIZE (rust/crates/sha2-0.10.8.crate) = 26357 SHA256 (rust/crates/simba-0.9.0.crate) = b3a386a501cd104797982c15ae17aafe8b9261315b5d07e3ec803f2ea26be0fa SIZE (rust/crates/simba-0.9.0.crate) = 52680 -SHA256 (rust/crates/smallvec-1.14.0.crate) = 7fcf8323ef1faaee30a44a340193b1ac6814fd9b7b4e88e9d4519a3e4abe1cfd -SIZE (rust/crates/smallvec-1.14.0.crate) = 35561 +SHA256 (rust/crates/smallvec-1.15.0.crate) = 8917285742e9f3e1683f0a9c4e6b57960b7314d0b08d30d1ecd426713ee2eee9 +SIZE (rust/crates/smallvec-1.15.0.crate) = 38113 SHA256 (rust/crates/smol_str-0.2.2.crate) = dd538fb6910ac1099850255cf94a94df6551fbdd602454387d0adb2d1ca6dead SIZE (rust/crates/smol_str-0.2.2.crate) = 15840 +SHA256 (rust/crates/stable_deref_trait-1.2.0.crate) = a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3 +SIZE (rust/crates/stable_deref_trait-1.2.0.crate) = 8054 SHA256 (rust/crates/strsim-0.11.1.crate) = 7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f SIZE (rust/crates/strsim-0.11.1.crate) = 14266 SHA256 (rust/crates/syn-1.0.109.crate) = 72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237 @@ -407,6 +419,8 @@ SHA256 (rust/crates/unindent-0.2.4.crate) = 7264e107f553ccae879d21fbea1d6724ac78 SIZE (rust/crates/unindent-0.2.4.crate) = 7422 SHA256 (rust/crates/utf8parse-0.2.2.crate) = 06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821 SIZE (rust/crates/utf8parse-0.2.2.crate) = 13499 +SHA256 (rust/crates/uuid-1.17.0.crate) = 3cf4199d1e5d15ddd86a694e4d0dffa9c323ce759fea589f00fef9d81cc1931d +SIZE (rust/crates/uuid-1.17.0.crate) = 59014 SHA256 (rust/crates/version_check-0.9.5.crate) = 0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a SIZE (rust/crates/version_check-0.9.5.crate) = 15554 SHA256 (rust/crates/walkdir-2.5.0.crate) = 29790946404f91d9c5d06f9874efddea1dc06c5efe94541a7d6863108e3a5e4b @@ -467,13 +481,9 @@ SHA256 (rust/crates/xshell-macros-0.2.7.crate) = 32ac00cd3f8ec9c1d33fb3e7958a82d SIZE (rust/crates/xshell-macros-0.2.7.crate) = 2890 SHA256 (rust/crates/yansi-0.5.1.crate) = 09041cd90cf85f7f8b2df60c646f853b7f535ce68f85244eb6731cf89fa498ec SIZE (rust/crates/yansi-0.5.1.crate) = 16525 -SHA256 (rust/crates/zerocopy-0.7.35.crate) = 1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0 -SIZE (rust/crates/zerocopy-0.7.35.crate) = 152645 -SHA256 (rust/crates/zerocopy-0.8.21.crate) = dcf01143b2dd5d134f11f545cf9f1431b13b749695cb33bcce051e7568f99478 -SIZE (rust/crates/zerocopy-0.8.21.crate) = 238506 -SHA256 (rust/crates/zerocopy-derive-0.7.35.crate) = fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e -SIZE (rust/crates/zerocopy-derive-0.7.35.crate) = 37829 -SHA256 (rust/crates/zerocopy-derive-0.8.21.crate) = 712c8386f4f4299382c9abee219bee7084f78fb939d88b6840fcc1320d5f6da2 -SIZE (rust/crates/zerocopy-derive-0.8.21.crate) = 83886 -SHA256 (Qiskit-qiskit-2.0.0_GH0.tar.gz) = 563938d0f2c353b0a79ea8b7a1c9a3d7d915972b282ddad48e0ffd1079edaeaa -SIZE (Qiskit-qiskit-2.0.0_GH0.tar.gz) = 7911127 +SHA256 (rust/crates/zerocopy-0.8.25.crate) = a1702d9583232ddb9174e01bb7c15a2ab8fb1bc6f227aa1233858c351a3ba0cb +SIZE (rust/crates/zerocopy-0.8.25.crate) = 252714 +SHA256 (rust/crates/zerocopy-derive-0.8.25.crate) = 28a6e20d751156648aa063f3800b706ee209a32c0b4d9f24be3d980b01be55ef +SIZE (rust/crates/zerocopy-derive-0.8.25.crate) = 87671 +SHA256 (Qiskit-qiskit-2.1.1_GH0.tar.gz) = 96cd5725ea5f99a6527885e9ef4436bcb34e6388c6ab1bf43d48b9dab80f429f +SIZE (Qiskit-qiskit-2.1.1_GH0.tar.gz) = 7095152 diff --git a/science/py-scikit-sparse/Makefile b/science/py-scikit-sparse/Makefile index ecc38f90c432..e80c63af51fe 100644 --- a/science/py-scikit-sparse/Makefile +++ b/science/py-scikit-sparse/Makefile @@ -1,6 +1,7 @@ PORTNAME= scikit-sparse DISTVERSIONPREFIX= v DISTVERSION= 0.4.16 +PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # missing files under tests/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/qiskit-aer/Makefile b/science/qiskit-aer/Makefile index ef595842d8e7..9a818aa16f08 100644 --- a/science/qiskit-aer/Makefile +++ b/science/qiskit-aer/Makefile @@ -1,6 +1,6 @@ PORTNAME= qiskit-aer DISTVERSION= 0.16.0.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science # quantum-computing MAINTAINER= yuri@FreeBSD.org diff --git a/science/qt6-quick3dphysics/distinfo b/science/qt6-quick3dphysics/distinfo index 03a1722c995d..8e99d6679edf 100644 --- a/science/qt6-quick3dphysics/distinfo +++ b/science/qt6-quick3dphysics/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749162772 -SHA256 (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 66e8365eb8c409a8426dec13a83203879f31845d555bf7632ce0728e8ddca24f -SIZE (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 4683360 +TIMESTAMP = 1756197855 +SHA256 (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 87fc6485638f52cd33dc1a755a11c78fd992e438fe77ef53e0ca57c63505cc8b +SIZE (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 4668516 diff --git a/science/seacas/Makefile b/science/seacas/Makefile index dab6f638940e..21b0c9a3d190 100644 --- a/science/seacas/Makefile +++ b/science/seacas/Makefile @@ -1,6 +1,7 @@ PORTNAME= seacas DISTVERSIONPREFIX= v DISTVERSION= 2025-03-13 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/siconos/Makefile b/science/siconos/Makefile index 463c424c080d..587760c82cc4 100644 --- a/science/siconos/Makefile +++ b/science/siconos/Makefile @@ -1,6 +1,6 @@ PORTNAME= siconos DISTVERSION= 4.5.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/smoldyn/Makefile b/science/smoldyn/Makefile index 965707c3adac..55178cea9aca 100644 --- a/science/smoldyn/Makefile +++ b/science/smoldyn/Makefile @@ -1,5 +1,5 @@ PORTNAME= smoldyn -DISTVERSION= 2.74 +DISTVERSION= 2.75 CATEGORIES= science MASTER_SITES= https://www.smoldyn.org/ @@ -32,8 +32,8 @@ PYTHON_CMAKE_BOOL= OPTION_PYTHON PYTHON_USES= python PYTHON_CMAKE_ON= -DPython3_EXECUTABLE=${PYTHON_CMD} PYTHON_BUILD_DEPENDS= ${PY_SETUPTOOLS} -PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} -PYTHON_BROKEN= pending biology/py-biosimulators-utils completion +#PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} +PYTHON_BROKEN= some python dependencies aren't ported post-extract: # see https://github.com/ssandrews/Smoldyn/issues/127 @${CHMOD} +x ${WRKSRC}/scripts/run_pyscript.py.in diff --git a/science/smoldyn/distinfo b/science/smoldyn/distinfo index 61749de73a7f..5083a957430a 100644 --- a/science/smoldyn/distinfo +++ b/science/smoldyn/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1737604798 -SHA256 (smoldyn-2.74.tgz) = 1abae836ac515092be14e2058af58a25981d7872c3a002fbff67bde0f64fa28a -SIZE (smoldyn-2.74.tgz) = 34348669 +TIMESTAMP = 1755906394 +SHA256 (smoldyn-2.75.tgz) = f7116e207d6ba91d3f709b6839d8054a622383ac6e0c5f81108015d083a2a094 +SIZE (smoldyn-2.75.tgz) = 34008076 diff --git a/science/step/distinfo b/science/step/distinfo index d0003f376b70..b2a6ad4575c2 100644 --- a/science/step/distinfo +++ b/science/step/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751381646 -SHA256 (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 0aa86e2dd0bebbd9da8b8b77d0da3cd924e25be7084accaf11850d51857fba3e -SIZE (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 987244 +TIMESTAMP = 1754646550 +SHA256 (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 994bab4d0750cfdeb3af1f92d6453ee173cd483e392ad170bf5250b23b4ddf3a +SIZE (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 1004072 diff --git a/science/step/pkg-plist b/science/step/pkg-plist index f0365a2c6bf1..4186212eb37b 100644 --- a/science/step/pkg-plist +++ b/science/step/pkg-plist @@ -133,6 +133,8 @@ share/locale/lt/LC_MESSAGES/step_example_files.mo share/locale/lt/LC_MESSAGES/step_objinfo_files.mo share/locale/lt/LC_MESSAGES/step_qt.qm share/locale/lv/LC_MESSAGES/step.mo +share/locale/lv/LC_MESSAGES/step_example_files.mo +share/locale/lv/LC_MESSAGES/step_objinfo_files.mo share/locale/lv/LC_MESSAGES/step_qt.qm share/locale/mai/LC_MESSAGES/step_qt.qm share/locale/ml/LC_MESSAGES/step.mo @@ -561,6 +563,23 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/examples/lt/solar.step %%DATADIR%%/examples/lt/springs.step %%DATADIR%%/examples/lt/wave.step +%%DATADIR%%/examples/lv/brownian.step +%%DATADIR%%/examples/lv/doublependulum.step +%%DATADIR%%/examples/lv/eightpendula.step +%%DATADIR%%/examples/lv/first.step +%%DATADIR%%/examples/lv/fourpendula.step +%%DATADIR%%/examples/lv/gas.step +%%DATADIR%%/examples/lv/graph.step +%%DATADIR%%/examples/lv/liquid.step +%%DATADIR%%/examples/lv/lissajous.step +%%DATADIR%%/examples/lv/motor.step +%%DATADIR%%/examples/lv/motor1.step +%%DATADIR%%/examples/lv/note.step +%%DATADIR%%/examples/lv/resonance.step +%%DATADIR%%/examples/lv/softbody.step +%%DATADIR%%/examples/lv/solar.step +%%DATADIR%%/examples/lv/springs.step +%%DATADIR%%/examples/lv/wave.step %%DATADIR%%/examples/ml/brownian.step %%DATADIR%%/examples/ml/doublependulum.step %%DATADIR%%/examples/ml/eightpendula.step @@ -1198,6 +1217,25 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/objinfo/l10n/lt/spring.html %%DATADIR%%/objinfo/l10n/lt/weightforce.html %%DATADIR%%/objinfo/l10n/lt/world.html +%%DATADIR%%/objinfo/l10n/lv/anchor.html +%%DATADIR%%/objinfo/l10n/lv/box.html +%%DATADIR%%/objinfo/l10n/lv/chargedparticle.html +%%DATADIR%%/objinfo/l10n/lv/coulombforce.html +%%DATADIR%%/objinfo/l10n/lv/disk.html +%%DATADIR%%/objinfo/l10n/lv/gas.html +%%DATADIR%%/objinfo/l10n/lv/gasljforce.html +%%DATADIR%%/objinfo/l10n/lv/gasparticle.html +%%DATADIR%%/objinfo/l10n/lv/gravitationforce.html +%%DATADIR%%/objinfo/l10n/lv/linearmotor.html +%%DATADIR%%/objinfo/l10n/lv/meter.html +%%DATADIR%%/objinfo/l10n/lv/note.html +%%DATADIR%%/objinfo/l10n/lv/particle.html +%%DATADIR%%/objinfo/l10n/lv/pin.html +%%DATADIR%%/objinfo/l10n/lv/polygon.html +%%DATADIR%%/objinfo/l10n/lv/softbody.html +%%DATADIR%%/objinfo/l10n/lv/spring.html +%%DATADIR%%/objinfo/l10n/lv/weightforce.html +%%DATADIR%%/objinfo/l10n/lv/world.html %%DATADIR%%/objinfo/l10n/ml/anchor.html %%DATADIR%%/objinfo/l10n/ml/box.html %%DATADIR%%/objinfo/l10n/ml/chargedparticle.html @@ -1555,6 +1593,11 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/tutorials/lt/tutorial3.step %%DATADIR%%/tutorials/lt/tutorial4.step %%DATADIR%%/tutorials/lt/tutorial5.step +%%DATADIR%%/tutorials/lv/tutorial1.step +%%DATADIR%%/tutorials/lv/tutorial2.step +%%DATADIR%%/tutorials/lv/tutorial3.step +%%DATADIR%%/tutorials/lv/tutorial4.step +%%DATADIR%%/tutorials/lv/tutorial5.step %%DATADIR%%/tutorials/ml/tutorial1.step %%DATADIR%%/tutorials/ml/tutorial2.step %%DATADIR%%/tutorials/ml/tutorial3.step diff --git a/science/tinker/Makefile b/science/tinker/Makefile index c5b9b72ff278..2406c4c31a27 100644 --- a/science/tinker/Makefile +++ b/science/tinker/Makefile @@ -1,5 +1,5 @@ PORTNAME= tinker -DISTVERSION= 8.11.3 +DISTVERSION= 25.3 PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://dasher.wustl.edu/tinker/downloads/ diff --git a/science/tinker/distinfo b/science/tinker/distinfo index 6c20209908c4..6ebb852d7522 100644 --- a/science/tinker/distinfo +++ b/science/tinker/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1719188902 -SHA256 (tinker-8.11.3.tar.gz) = 8dfbc9fb8f26742d91139187657e2c905744b0243538f81b75bc04cdc2606ff7 -SIZE (tinker-8.11.3.tar.gz) = 73256260 +TIMESTAMP = 1755934058 +SHA256 (tinker-25.3.tar.gz) = 84744d00e2936be23be6ed6acbbc251f07e016db53ead079a270280539a42145 +SIZE (tinker-25.3.tar.gz) = 80772560 diff --git a/science/tinker/pkg-plist b/science/tinker/pkg-plist index 286fc0abcadd..b0f9367ade44 100644 --- a/science/tinker/pkg-plist +++ b/science/tinker/pkg-plist @@ -64,6 +64,8 @@ bin/xyzint bin/xyzmol2 bin/xyzpdb %%DATADIR%%/params/0README +%%DATADIR%%/params/amber14sb.prm +%%DATADIR%%/params/amber19sb.prm %%DATADIR%%/params/amber94.prm %%DATADIR%%/params/amber96.prm %%DATADIR%%/params/amber98.prm @@ -82,7 +84,8 @@ bin/xyzpdb %%DATADIR%%/params/basic.prm %%DATADIR%%/params/charmm19.prm %%DATADIR%%/params/charmm22.prm -%%DATADIR%%/params/charmm22cmap.prm +%%DATADIR%%/params/charmm27.prm +%%DATADIR%%/params/charmm36.prm %%DATADIR%%/params/dang.prm %%DATADIR%%/params/hippo19.prm %%DATADIR%%/params/hoch.prm @@ -90,8 +93,9 @@ bin/xyzpdb %%DATADIR%%/params/mm2.prm %%DATADIR%%/params/mm3.prm %%DATADIR%%/params/mm3pro.prm -%%DATADIR%%/params/mmff.prm -%%DATADIR%%/params/oplsaa.prm +%%DATADIR%%/params/mmff94.prm +%%DATADIR%%/params/mmff94s.prm +%%DATADIR%%/params/oplsaa08.prm %%DATADIR%%/params/oplsaal.prm %%DATADIR%%/params/oplsua.prm %%DATADIR%%/params/smoothaa.prm @@ -206,6 +210,10 @@ bin/xyzpdb %%DATADIR%%/test/polyala.key %%DATADIR%%/test/polyala.log %%DATADIR%%/test/polyala.run +%%DATADIR%%/test/pyridine.dat +%%DATADIR%%/test/pyridine.log +%%DATADIR%%/test/pyridine.run +%%DATADIR%%/test/pyridine.xyz %%DATADIR%%/test/salt.cell %%DATADIR%%/test/salt.key %%DATADIR%%/test/salt.log diff --git a/science/trilinos/Makefile b/science/trilinos/Makefile index 6c5576de4913..d2c8f9e9253c 100644 --- a/science/trilinos/Makefile +++ b/science/trilinos/Makefile @@ -1,6 +1,7 @@ PORTNAME= trilinos DISTVERSIONPREFIX= trilinos-release- DISTVERSION= 16-1-0 +PORTREVISION= 1 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/vipster/Makefile b/science/vipster/Makefile index e0b096c3b3ea..18acb86d904d 100644 --- a/science/vipster/Makefile +++ b/science/vipster/Makefile @@ -1,6 +1,7 @@ PORTNAME= vipster DISTVERSIONPREFIX= v DISTVERSION= 1.19.1b-109 +PORTREVISION= 1 DISTVERSIONSUFFIX= -gfb4a6ed CATEGORIES= science diff --git a/science/votca/Makefile b/science/votca/Makefile index b1c1f064e67c..f12745e528a9 100644 --- a/science/votca/Makefile +++ b/science/votca/Makefile @@ -12,7 +12,6 @@ WWW= https://www.votca.org/ \ LICENSE= APACHE20 BROKEN_i386= undefined reference to `__atomic_load' # ' -BROKEN_FreeBSD_13= compilation fails: error: no member named 'bool_isnan' in namespace 'std::__math'; did you mean simply 'bool_isnan'? PY_DEPENDS= \ ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR} \ |