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-rw-r--r--science/arbor/Makefile2
-rw-r--r--science/axom/Makefile1
-rw-r--r--science/bout++/Makefile2
-rw-r--r--science/cantera/Makefile2
-rw-r--r--science/chemicalfun/Makefile2
-rw-r--r--science/csvtk/Makefile1
-rw-r--r--science/gramps/Makefile2
-rw-r--r--science/gramps/distinfo6
-rw-r--r--science/hypre/Makefile1
-rw-r--r--science/kalzium/distinfo6
-rw-r--r--science/kalzium/pkg-plist20
-rw-r--r--science/molgif/Makefile2
-rw-r--r--science/ncrystal/Makefile7
-rw-r--r--science/ncrystal/distinfo6
-rw-r--r--science/openmc/Makefile3
-rw-r--r--science/opensph/Makefile2
-rw-r--r--science/paje/Makefile2
-rw-r--r--science/py-eccodes/Makefile2
-rw-r--r--science/py-eccodes/distinfo6
-rw-r--r--science/py-eccodes/files/patch-setup.py10
-rw-r--r--science/py-ncrystal/Makefile2
-rw-r--r--science/py-ncrystal/distinfo6
-rw-r--r--science/qiskit-aer/Makefile2
-rw-r--r--science/seacas/Makefile1
-rw-r--r--science/step/distinfo6
-rw-r--r--science/step/pkg-plist43
-rw-r--r--science/vipster/Makefile1
27 files changed, 111 insertions, 35 deletions
diff --git a/science/arbor/Makefile b/science/arbor/Makefile
index 15368c1b0ac6..d2d6e0cf6ef2 100644
--- a/science/arbor/Makefile
+++ b/science/arbor/Makefile
@@ -1,7 +1,7 @@
PORTNAME= arbor
DISTVERSIONPREFIX= v
DISTVERSION= 0.10.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/axom/Makefile b/science/axom/Makefile
index 35f116e96434..58c94b7ba017 100644
--- a/science/axom/Makefile
+++ b/science/axom/Makefile
@@ -1,6 +1,7 @@
PORTNAME= axom
DISTVERSIONPREFIX= v
DISTVERSION= 0.10.1
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/bout++/Makefile b/science/bout++/Makefile
index bbdf2813b4cd..43b9accad186 100644
--- a/science/bout++/Makefile
+++ b/science/bout++/Makefile
@@ -1,7 +1,7 @@
PORTNAME= bout++
DISTVERSIONPREFIX= v
DISTVERSION= 5.1.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science math # physics
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/cantera/Makefile b/science/cantera/Makefile
index ebaa5cf75809..61a965965fe2 100644
--- a/science/cantera/Makefile
+++ b/science/cantera/Makefile
@@ -1,7 +1,7 @@
PORTNAME= cantera
DISTVERSIONPREFIX= v
DISTVERSION= 3.1.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science # chemistry physics
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/chemicalfun/Makefile b/science/chemicalfun/Makefile
index 02ab01468d81..9b3afed93586 100644
--- a/science/chemicalfun/Makefile
+++ b/science/chemicalfun/Makefile
@@ -1,6 +1,6 @@
PORTNAME= chemicalfun
DISTVERSION= 0.1.8
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science # chemistry
MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${PORTNAME}/get/${BB_COMMIT}${EXTRACT_SUFX}?dummy=/:src
DISTFILES= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}:src
diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile
index a9105577fa35..e4b2b99739a4 100644
--- a/science/csvtk/Makefile
+++ b/science/csvtk/Makefile
@@ -1,6 +1,7 @@
PORTNAME= csvtk
DISTVERSIONPREFIX= v
DISTVERSION= 0.34.0
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= jwb@FreeBSD.org
diff --git a/science/gramps/Makefile b/science/gramps/Makefile
index 4074db4cc44f..f261cd0a1aa4 100644
--- a/science/gramps/Makefile
+++ b/science/gramps/Makefile
@@ -1,5 +1,5 @@
PORTNAME= gramps
-DISTVERSION= 6.0.3
+DISTVERSION= 6.0.4
CATEGORIES= science gnome python
MASTER_SITES= PYPI
diff --git a/science/gramps/distinfo b/science/gramps/distinfo
index 7f082b790a6b..30016e379016 100644
--- a/science/gramps/distinfo
+++ b/science/gramps/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1750276417
-SHA256 (gramps-6.0.3.tar.gz) = 079fab79c330c2332e5cc5cd1ec9e953a2b76d9f103aa774b7850d01baf874ee
-SIZE (gramps-6.0.3.tar.gz) = 21803163
+TIMESTAMP = 1754945114
+SHA256 (gramps-6.0.4.tar.gz) = ebabb1cfa8dc61859ee0e9c4ad0b54c94ccff2809dd1b0895a38a46b80382692
+SIZE (gramps-6.0.4.tar.gz) = 21963080
diff --git a/science/hypre/Makefile b/science/hypre/Makefile
index d5df638850a3..a439de1d4f3c 100644
--- a/science/hypre/Makefile
+++ b/science/hypre/Makefile
@@ -1,6 +1,7 @@
PORTNAME= hypre
DISTVERSIONPREFIX= v
DISTVERSION= 2.33.0
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/kalzium/distinfo b/science/kalzium/distinfo
index 55a8ed08734d..dc9bdf4527dc 100644
--- a/science/kalzium/distinfo
+++ b/science/kalzium/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1751381644
-SHA256 (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = d8d76ae3d123d93fe0ddf33992d7c85292ec5560b76a634f9bf2d731c2fccada
-SIZE (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = 22660296
+TIMESTAMP = 1754646547
+SHA256 (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 8765737e7baeb7fb0d0c16112ce11694ddb90a102e8e6b3e723dae9d595b8529
+SIZE (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 22650880
diff --git a/science/kalzium/pkg-plist b/science/kalzium/pkg-plist
index 6d96ce611615..08dc853471f9 100644
--- a/science/kalzium/pkg-plist
+++ b/science/kalzium/pkg-plist
@@ -10,6 +10,9 @@ include/libkdeedu/psetables.h
include/libkdeedu/science_export.h
include/libkdeedu/spectrum.h
include/libkdeedu/spectrumparser.h
+lib/libcompoundviewer.so
+lib/libcompoundviewer.so.5
+lib/libcompoundviewer.so.5.0.0
lib/libscience.so
lib/libscience.so.5
lib/libscience.so.5.0.0
@@ -348,6 +351,7 @@ share/icons/hicolor/scalable/apps/kalzium.svgz
%%DATADIR%%/icons/hicolor/scalable/actions/statematter.svgz
%%DATADIR%%/icons/hicolor/scalable/actions/timeline.svgz
%%DATADIR%%/icons/hicolor/scalable/actions/tooltip.svgz
+share/knsrcfiles/kalzium.knsrc
share/libkdeedu/data/elements.xml
share/libkdeedu/data/isotopes.xml
share/libkdeedu/data/spectra.xml
@@ -383,6 +387,7 @@ share/locale/hi/LC_MESSAGES/kalzium.mo
share/locale/hne/LC_MESSAGES/kalzium.mo
share/locale/hr/LC_MESSAGES/kalzium.mo
share/locale/hu/LC_MESSAGES/kalzium.mo
+share/locale/ia/LC_MESSAGES/kalzium.mo
share/locale/is/LC_MESSAGES/kalzium.mo
share/locale/it/LC_MESSAGES/kalzium.mo
share/locale/ja/LC_MESSAGES/kalzium.mo
@@ -424,6 +429,21 @@ share/locale/uk/LC_MESSAGES/kalzium.mo
share/locale/xh/LC_MESSAGES/kalzium.mo
share/locale/zh_CN/LC_MESSAGES/kalzium.mo
share/locale/zh_TW/LC_MESSAGES/kalzium.mo
+share/man/ca/man1/kalzium.1.gz
+share/man/da/man1/kalzium.1.gz
+share/man/de/man1/kalzium.1.gz
+share/man/es/man1/kalzium.1.gz
+share/man/et/man1/kalzium.1.gz
+share/man/fr/man1/kalzium.1.gz
+share/man/gl/man1/kalzium.1.gz
+share/man/it/man1/kalzium.1.gz
share/man/man1/kalzium.1.gz
+share/man/nl/man1/kalzium.1.gz
+share/man/pl/man1/kalzium.1.gz
+share/man/pt/man1/kalzium.1.gz
+share/man/pt_BR/man1/kalzium.1.gz
+share/man/ru/man1/kalzium.1.gz
+share/man/sv/man1/kalzium.1.gz
+share/man/uk/man1/kalzium.1.gz
share/metainfo/org.kde.kalzium.appdata.xml
share/qlogging-categories6/kalzium.categories
diff --git a/science/molgif/Makefile b/science/molgif/Makefile
index cec8591a420f..280dc2503615 100644
--- a/science/molgif/Makefile
+++ b/science/molgif/Makefile
@@ -1,6 +1,6 @@
PORTNAME= molgif
DISTVERSION= g20180108
-PORTREVISION= 28
+PORTREVISION= 29
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/ncrystal/Makefile b/science/ncrystal/Makefile
index 9cfb8da272b6..8738797874bd 100644
--- a/science/ncrystal/Makefile
+++ b/science/ncrystal/Makefile
@@ -1,6 +1,6 @@
PORTNAME= ncrystal
DISTVERSIONPREFIX= v
-DISTVERSION= 4.2.6
+DISTVERSION= 4.2.8
CATEGORIES= science # physics
MAINTAINER= yuri@FreeBSD.org
@@ -21,9 +21,6 @@ SHEBANG_FILES= tests/scripts/*
CMAKE_TESTING_ON= NCRYSTAL_ENABLE_TESTING \
NCRYSTAL_ENABLE_CORE_TEST
-post-install: # workaround for https://github.com/mctools/ncrystal/issues/150
- @${RM} ${STAGEDIR}${PREFIX}/*.sh
-
-# tests as of 4.2.6: 52% tests passed, 42 tests failed out of 87
+# tests as of 4.2.6: 51% tests passed, 43 tests failed out of 88 (only py_xx tests fail)
.include <bsd.port.mk>
diff --git a/science/ncrystal/distinfo b/science/ncrystal/distinfo
index 1a8eec6572c9..ebf4e8a8d01a 100644
--- a/science/ncrystal/distinfo
+++ b/science/ncrystal/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1753507988
-SHA256 (mctools-ncrystal-v4.2.6_GH0.tar.gz) = 4e7926d8bb931cce3546e9406a2a3d9b182b864e94ce34e31b1a6d9475479602
-SIZE (mctools-ncrystal-v4.2.6_GH0.tar.gz) = 2821990
+TIMESTAMP = 1754558330
+SHA256 (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 499e355e8cb534954101241c5af1f3d4f729aa87f4d63734b05570033a5d6dbd
+SIZE (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 2822048
diff --git a/science/openmc/Makefile b/science/openmc/Makefile
index 9481907cdec7..dd31d577e3d7 100644
--- a/science/openmc/Makefile
+++ b/science/openmc/Makefile
@@ -1,6 +1,7 @@
PORTNAME= openmc
DISTVERSIONPREFIX= v
DISTVERSION= 0.15.0
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
@@ -12,7 +13,7 @@ WWW= https://openmc.org/ \
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
-BROKEN_FreeBSD_15= compilation fails with clang-19, see https://github.com/openmc-dev/openmc/issues/3183
+BROKEN= compilation fails with clang-19, see https://github.com/openmc-dev/openmc/issues/3183
BUILD_DEPENDS= xtensor>0:math/xtensor
LIB_DEPENDS= libfmt.so:devel/libfmt \
diff --git a/science/opensph/Makefile b/science/opensph/Makefile
index 84075c2486e7..8550bb4472b0 100644
--- a/science/opensph/Makefile
+++ b/science/opensph/Makefile
@@ -1,6 +1,6 @@
PORTNAME= OpenSPH
DISTVERSION= 0.4.1
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/paje/Makefile b/science/paje/Makefile
index 6c6a554a8b5b..0d73a91fe8bf 100644
--- a/science/paje/Makefile
+++ b/science/paje/Makefile
@@ -1,6 +1,6 @@
PORTNAME= paje
PORTVERSION= 1.97
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science gnustep
MASTER_SITES= SF/${PORTNAME}/Releases
DISTNAME= Paje_${PORTVERSION}
diff --git a/science/py-eccodes/Makefile b/science/py-eccodes/Makefile
index 5f7093dce593..044eb813edc2 100644
--- a/science/py-eccodes/Makefile
+++ b/science/py-eccodes/Makefile
@@ -1,5 +1,5 @@
PORTNAME= eccodes
-PORTVERSION= 2.42.0
+PORTVERSION= 2.43.0
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-eccodes/distinfo b/science/py-eccodes/distinfo
index 21954c2072d6..e37fc89abc25 100644
--- a/science/py-eccodes/distinfo
+++ b/science/py-eccodes/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1750954222
-SHA256 (eccodes-2.42.0.tar.gz) = 0abb2bc6c6f4e83749c4e9c313d5428c62b15dc6c5b47d2807943e3a5ffd5291
-SIZE (eccodes-2.42.0.tar.gz) = 2268756
+TIMESTAMP = 1753796092
+SHA256 (eccodes-2.43.0.tar.gz) = b99c41aaa64b20291452297a3d513e0b08cc96bcedfe364d8f58348159c48faa
+SIZE (eccodes-2.43.0.tar.gz) = 2269307
diff --git a/science/py-eccodes/files/patch-setup.py b/science/py-eccodes/files/patch-setup.py
new file mode 100644
index 000000000000..8a15aeac70e2
--- /dev/null
+++ b/science/py-eccodes/files/patch-setup.py
@@ -0,0 +1,10 @@
+--- setup.py.orig 2025-07-25 10:03:25 UTC
++++ setup.py
+@@ -90,7 +90,6 @@ install_requires += [
+ "attrs",
+ "cffi",
+ "findlibs",
+- "eccodeslib;platform_system!='Windows'",
+ ]
+
+ setuptools.setup(
diff --git a/science/py-ncrystal/Makefile b/science/py-ncrystal/Makefile
index ed1e1279b00e..c6a90d0c973f 100644
--- a/science/py-ncrystal/Makefile
+++ b/science/py-ncrystal/Makefile
@@ -1,6 +1,6 @@
PORTNAME= ncrystal
DISTVERSIONPREFIX= v
-DISTVERSION= 4.2.6
+DISTVERSION= 4.2.8
CATEGORIES= science # physics
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-ncrystal/distinfo b/science/py-ncrystal/distinfo
index aca64d45e427..335765086002 100644
--- a/science/py-ncrystal/distinfo
+++ b/science/py-ncrystal/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1753507607
-SHA256 (mctools-ncrystal-v4.2.6_GH0.tar.gz) = 4e7926d8bb931cce3546e9406a2a3d9b182b864e94ce34e31b1a6d9475479602
-SIZE (mctools-ncrystal-v4.2.6_GH0.tar.gz) = 2821990
+TIMESTAMP = 1754559207
+SHA256 (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 499e355e8cb534954101241c5af1f3d4f729aa87f4d63734b05570033a5d6dbd
+SIZE (mctools-ncrystal-v4.2.8_GH0.tar.gz) = 2822048
diff --git a/science/qiskit-aer/Makefile b/science/qiskit-aer/Makefile
index ef595842d8e7..9a818aa16f08 100644
--- a/science/qiskit-aer/Makefile
+++ b/science/qiskit-aer/Makefile
@@ -1,6 +1,6 @@
PORTNAME= qiskit-aer
DISTVERSION= 0.16.0.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science # quantum-computing
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/seacas/Makefile b/science/seacas/Makefile
index dab6f638940e..21b0c9a3d190 100644
--- a/science/seacas/Makefile
+++ b/science/seacas/Makefile
@@ -1,6 +1,7 @@
PORTNAME= seacas
DISTVERSIONPREFIX= v
DISTVERSION= 2025-03-13
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/step/distinfo b/science/step/distinfo
index d0003f376b70..b2a6ad4575c2 100644
--- a/science/step/distinfo
+++ b/science/step/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1751381646
-SHA256 (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 0aa86e2dd0bebbd9da8b8b77d0da3cd924e25be7084accaf11850d51857fba3e
-SIZE (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 987244
+TIMESTAMP = 1754646550
+SHA256 (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 994bab4d0750cfdeb3af1f92d6453ee173cd483e392ad170bf5250b23b4ddf3a
+SIZE (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 1004072
diff --git a/science/step/pkg-plist b/science/step/pkg-plist
index f0365a2c6bf1..4186212eb37b 100644
--- a/science/step/pkg-plist
+++ b/science/step/pkg-plist
@@ -133,6 +133,8 @@ share/locale/lt/LC_MESSAGES/step_example_files.mo
share/locale/lt/LC_MESSAGES/step_objinfo_files.mo
share/locale/lt/LC_MESSAGES/step_qt.qm
share/locale/lv/LC_MESSAGES/step.mo
+share/locale/lv/LC_MESSAGES/step_example_files.mo
+share/locale/lv/LC_MESSAGES/step_objinfo_files.mo
share/locale/lv/LC_MESSAGES/step_qt.qm
share/locale/mai/LC_MESSAGES/step_qt.qm
share/locale/ml/LC_MESSAGES/step.mo
@@ -561,6 +563,23 @@ share/mime/packages/org.kde.step.xml
%%DATADIR%%/examples/lt/solar.step
%%DATADIR%%/examples/lt/springs.step
%%DATADIR%%/examples/lt/wave.step
+%%DATADIR%%/examples/lv/brownian.step
+%%DATADIR%%/examples/lv/doublependulum.step
+%%DATADIR%%/examples/lv/eightpendula.step
+%%DATADIR%%/examples/lv/first.step
+%%DATADIR%%/examples/lv/fourpendula.step
+%%DATADIR%%/examples/lv/gas.step
+%%DATADIR%%/examples/lv/graph.step
+%%DATADIR%%/examples/lv/liquid.step
+%%DATADIR%%/examples/lv/lissajous.step
+%%DATADIR%%/examples/lv/motor.step
+%%DATADIR%%/examples/lv/motor1.step
+%%DATADIR%%/examples/lv/note.step
+%%DATADIR%%/examples/lv/resonance.step
+%%DATADIR%%/examples/lv/softbody.step
+%%DATADIR%%/examples/lv/solar.step
+%%DATADIR%%/examples/lv/springs.step
+%%DATADIR%%/examples/lv/wave.step
%%DATADIR%%/examples/ml/brownian.step
%%DATADIR%%/examples/ml/doublependulum.step
%%DATADIR%%/examples/ml/eightpendula.step
@@ -1198,6 +1217,25 @@ share/mime/packages/org.kde.step.xml
%%DATADIR%%/objinfo/l10n/lt/spring.html
%%DATADIR%%/objinfo/l10n/lt/weightforce.html
%%DATADIR%%/objinfo/l10n/lt/world.html
+%%DATADIR%%/objinfo/l10n/lv/anchor.html
+%%DATADIR%%/objinfo/l10n/lv/box.html
+%%DATADIR%%/objinfo/l10n/lv/chargedparticle.html
+%%DATADIR%%/objinfo/l10n/lv/coulombforce.html
+%%DATADIR%%/objinfo/l10n/lv/disk.html
+%%DATADIR%%/objinfo/l10n/lv/gas.html
+%%DATADIR%%/objinfo/l10n/lv/gasljforce.html
+%%DATADIR%%/objinfo/l10n/lv/gasparticle.html
+%%DATADIR%%/objinfo/l10n/lv/gravitationforce.html
+%%DATADIR%%/objinfo/l10n/lv/linearmotor.html
+%%DATADIR%%/objinfo/l10n/lv/meter.html
+%%DATADIR%%/objinfo/l10n/lv/note.html
+%%DATADIR%%/objinfo/l10n/lv/particle.html
+%%DATADIR%%/objinfo/l10n/lv/pin.html
+%%DATADIR%%/objinfo/l10n/lv/polygon.html
+%%DATADIR%%/objinfo/l10n/lv/softbody.html
+%%DATADIR%%/objinfo/l10n/lv/spring.html
+%%DATADIR%%/objinfo/l10n/lv/weightforce.html
+%%DATADIR%%/objinfo/l10n/lv/world.html
%%DATADIR%%/objinfo/l10n/ml/anchor.html
%%DATADIR%%/objinfo/l10n/ml/box.html
%%DATADIR%%/objinfo/l10n/ml/chargedparticle.html
@@ -1555,6 +1593,11 @@ share/mime/packages/org.kde.step.xml
%%DATADIR%%/tutorials/lt/tutorial3.step
%%DATADIR%%/tutorials/lt/tutorial4.step
%%DATADIR%%/tutorials/lt/tutorial5.step
+%%DATADIR%%/tutorials/lv/tutorial1.step
+%%DATADIR%%/tutorials/lv/tutorial2.step
+%%DATADIR%%/tutorials/lv/tutorial3.step
+%%DATADIR%%/tutorials/lv/tutorial4.step
+%%DATADIR%%/tutorials/lv/tutorial5.step
%%DATADIR%%/tutorials/ml/tutorial1.step
%%DATADIR%%/tutorials/ml/tutorial2.step
%%DATADIR%%/tutorials/ml/tutorial3.step
diff --git a/science/vipster/Makefile b/science/vipster/Makefile
index e0b096c3b3ea..18acb86d904d 100644
--- a/science/vipster/Makefile
+++ b/science/vipster/Makefile
@@ -1,6 +1,7 @@
PORTNAME= vipster
DISTVERSIONPREFIX= v
DISTVERSION= 1.19.1b-109
+PORTREVISION= 1
DISTVERSIONSUFFIX= -gfb4a6ed
CATEGORIES= science