diff options
Diffstat (limited to 'science')
29 files changed, 155 insertions, 84 deletions
diff --git a/science/afni/Makefile b/science/afni/Makefile index c29dbf3d85da..c555c6c25e04 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -1,6 +1,6 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 25.2.06 +DISTVERSION= 25.2.09 CATEGORIES= science biology graphics perl5 python MAINTAINER= fernape@FreeBSD.org diff --git a/science/afni/distinfo b/science/afni/distinfo index bdb61dc7648f..4ec769ac8338 100644 --- a/science/afni/distinfo +++ b/science/afni/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1754029956 -SHA256 (afni-afni-AFNI_25.2.06_GH0.tar.gz) = d0d67099ec86804b049d51e7e51a08076f6e60d15c00cb292626e6fe6bc3a0df -SIZE (afni-afni-AFNI_25.2.06_GH0.tar.gz) = 53316535 +TIMESTAMP = 1756108500 +SHA256 (afni-afni-AFNI_25.2.09_GH0.tar.gz) = ff6aacf8a4f2b0b60ea584ece08e23db665488bfb1978957f05f30df6c394e05 +SIZE (afni-afni-AFNI_25.2.09_GH0.tar.gz) = 53321640 diff --git a/science/fastjet/Makefile b/science/fastjet/Makefile index 8990a1950f62..00a5ee17b4c4 100644 --- a/science/fastjet/Makefile +++ b/science/fastjet/Makefile @@ -1,5 +1,5 @@ PORTNAME= fastjet -DISTVERSION= 3.4.3 +DISTVERSION= 3.5.1 CATEGORIES= science MASTER_SITES= https://fastjet.fr/repo/ @@ -46,7 +46,7 @@ post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/lib*.so* post-install-PYTHON-on: - @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet.so.0.0.0 + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet_swig.so.0.0.0 do-test: # python tests diff --git a/science/fastjet/distinfo b/science/fastjet/distinfo index c318c545d2f6..896e7e12357e 100644 --- a/science/fastjet/distinfo +++ b/science/fastjet/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1730346663 -SHA256 (fastjet-3.4.3.tar.gz) = cc175471bfab8656b8c6183a8e5e9ad05d5f7506e46f3212a9a8230905b8f6a3 -SIZE (fastjet-3.4.3.tar.gz) = 2984798 +TIMESTAMP = 1755888400 +SHA256 (fastjet-3.5.1.tar.gz) = 9a4154163e72041dee3fdde9cb24e814625e178091a8734a6ad5375e5371b423 +SIZE (fastjet-3.5.1.tar.gz) = 3069022 diff --git a/science/fastjet/pkg-plist b/science/fastjet/pkg-plist index 35b8c8caf328..5f83019a7641 100644 --- a/science/fastjet/pkg-plist +++ b/science/fastjet/pkg-plist @@ -129,11 +129,12 @@ lib/libsiscone_spherical.so lib/libsiscone_spherical.so.0 lib/libsiscone_spherical.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-1.pyc +%%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-2.pyc %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.pyc -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.a -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0 -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0.0.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.a +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/fastjet.py %%PYTHON%%%%DATADIR%%/pyinterface/FastJetPythonExtensions.hh %%PYTHON%%%%DATADIR%%/pyinterface/fastjet-doc.i diff --git a/science/gramps/Makefile b/science/gramps/Makefile index 4074db4cc44f..f261cd0a1aa4 100644 --- a/science/gramps/Makefile +++ b/science/gramps/Makefile @@ -1,5 +1,5 @@ PORTNAME= gramps -DISTVERSION= 6.0.3 +DISTVERSION= 6.0.4 CATEGORIES= science gnome python MASTER_SITES= PYPI diff --git a/science/gramps/distinfo b/science/gramps/distinfo index 7f082b790a6b..30016e379016 100644 --- a/science/gramps/distinfo +++ b/science/gramps/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750276417 -SHA256 (gramps-6.0.3.tar.gz) = 079fab79c330c2332e5cc5cd1ec9e953a2b76d9f103aa774b7850d01baf874ee -SIZE (gramps-6.0.3.tar.gz) = 21803163 +TIMESTAMP = 1754945114 +SHA256 (gramps-6.0.4.tar.gz) = ebabb1cfa8dc61859ee0e9c4ad0b54c94ccff2809dd1b0895a38a46b80382692 +SIZE (gramps-6.0.4.tar.gz) = 21963080 diff --git a/science/kalzium/distinfo b/science/kalzium/distinfo index 55a8ed08734d..dc9bdf4527dc 100644 --- a/science/kalzium/distinfo +++ b/science/kalzium/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751381644 -SHA256 (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = d8d76ae3d123d93fe0ddf33992d7c85292ec5560b76a634f9bf2d731c2fccada -SIZE (KDE/release-service/25.04.3/kalzium-25.04.3.tar.xz) = 22660296 +TIMESTAMP = 1754646547 +SHA256 (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 8765737e7baeb7fb0d0c16112ce11694ddb90a102e8e6b3e723dae9d595b8529 +SIZE (KDE/release-service/25.08.0/kalzium-25.08.0.tar.xz) = 22650880 diff --git a/science/kalzium/pkg-plist b/science/kalzium/pkg-plist index 6d96ce611615..08dc853471f9 100644 --- a/science/kalzium/pkg-plist +++ b/science/kalzium/pkg-plist @@ -10,6 +10,9 @@ include/libkdeedu/psetables.h include/libkdeedu/science_export.h include/libkdeedu/spectrum.h include/libkdeedu/spectrumparser.h +lib/libcompoundviewer.so +lib/libcompoundviewer.so.5 +lib/libcompoundviewer.so.5.0.0 lib/libscience.so lib/libscience.so.5 lib/libscience.so.5.0.0 @@ -348,6 +351,7 @@ share/icons/hicolor/scalable/apps/kalzium.svgz %%DATADIR%%/icons/hicolor/scalable/actions/statematter.svgz %%DATADIR%%/icons/hicolor/scalable/actions/timeline.svgz %%DATADIR%%/icons/hicolor/scalable/actions/tooltip.svgz +share/knsrcfiles/kalzium.knsrc share/libkdeedu/data/elements.xml share/libkdeedu/data/isotopes.xml share/libkdeedu/data/spectra.xml @@ -383,6 +387,7 @@ share/locale/hi/LC_MESSAGES/kalzium.mo share/locale/hne/LC_MESSAGES/kalzium.mo share/locale/hr/LC_MESSAGES/kalzium.mo share/locale/hu/LC_MESSAGES/kalzium.mo +share/locale/ia/LC_MESSAGES/kalzium.mo share/locale/is/LC_MESSAGES/kalzium.mo share/locale/it/LC_MESSAGES/kalzium.mo share/locale/ja/LC_MESSAGES/kalzium.mo @@ -424,6 +429,21 @@ share/locale/uk/LC_MESSAGES/kalzium.mo share/locale/xh/LC_MESSAGES/kalzium.mo share/locale/zh_CN/LC_MESSAGES/kalzium.mo share/locale/zh_TW/LC_MESSAGES/kalzium.mo +share/man/ca/man1/kalzium.1.gz +share/man/da/man1/kalzium.1.gz +share/man/de/man1/kalzium.1.gz +share/man/es/man1/kalzium.1.gz +share/man/et/man1/kalzium.1.gz +share/man/fr/man1/kalzium.1.gz +share/man/gl/man1/kalzium.1.gz +share/man/it/man1/kalzium.1.gz share/man/man1/kalzium.1.gz +share/man/nl/man1/kalzium.1.gz +share/man/pl/man1/kalzium.1.gz +share/man/pt/man1/kalzium.1.gz +share/man/pt_BR/man1/kalzium.1.gz +share/man/ru/man1/kalzium.1.gz +share/man/sv/man1/kalzium.1.gz +share/man/uk/man1/kalzium.1.gz share/metainfo/org.kde.kalzium.appdata.xml share/qlogging-categories6/kalzium.categories diff --git a/science/libcint/Makefile b/science/libcint/Makefile index af528fdf2ec6..030c5de31ee3 100644 --- a/science/libcint/Makefile +++ b/science/libcint/Makefile @@ -1,7 +1,6 @@ PORTNAME= libcint DISTVERSIONPREFIX= v -DISTVERSION= 6.1.2 -PORTREVISION= 2 +DISTVERSION= 6.1.3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -24,7 +23,7 @@ PLIST_FILES= include/cint.h \ include/cint_funcs.h \ lib/libcint.so \ lib/libcint.so.${PORTVERSION:R:R} \ - lib/libcint.so.6.1.1 # see https://github.com/sunqm/libcint/issues/106 + lib/libcint.so.${PORTVERSION} #lib/libcint.so.${PORTVERSION} post-patch: @@ -39,4 +38,6 @@ do-test: # needs science/py-pyscf, pending https://github.com/pyscf/pyscf/issues ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} test +# tests as of 6.1.3: 100% tests passed, 0 tests failed out of 2 + .include <bsd.port.mk> diff --git a/science/libcint/distinfo b/science/libcint/distinfo index 947086b18216..c2d4cf4a3f83 100644 --- a/science/libcint/distinfo +++ b/science/libcint/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1710384136 -SHA256 (sunqm-libcint-v6.1.2_GH0.tar.gz) = 8287e1eaf2b8c8e19eb7a8ea92fd73898f0884023c503b84624610400adb25c4 -SIZE (sunqm-libcint-v6.1.2_GH0.tar.gz) = 50862041 +TIMESTAMP = 1755587717 +SHA256 (sunqm-libcint-v6.1.3_GH0.tar.gz) = e4d977d4aeb4d5b87639ea57a2d2f1d5c1001f3f94e480b08c297a6cbc186f27 +SIZE (sunqm-libcint-v6.1.3_GH0.tar.gz) = 50867546 diff --git a/science/libcint/files/patch-src_c2f.h b/science/libcint/files/patch-src_c2f.h deleted file mode 100644 index b7d3deccc865..000000000000 --- a/science/libcint/files/patch-src_c2f.h +++ /dev/null @@ -1,10 +0,0 @@ ---- src/c2f.h.orig 2018-03-21 00:24:56 UTC -+++ src/c2f.h -@@ -4,6 +4,7 @@ - */ - - #include "config.h" -+#include <sys/types.h> - - #define ALL_CINT_FORTRAN_(NAME) \ - int c##NAME##_sph_(double *out, int *shls, int *atm, int *natm, \ diff --git a/science/mcpl/Makefile b/science/mcpl/Makefile index 7ee2ca520278..25c22bb8a36c 100644 --- a/science/mcpl/Makefile +++ b/science/mcpl/Makefile @@ -11,6 +11,9 @@ WWW= https://mctools.github.io/mcpl/ \ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE +NOT_FOR_ARCHS= armv7 powerpc i386 +NOT_FOR_ARCHS_REASON= MCPL does not support 32 bit platforms + BROKEN_i386= compilation fails, see https://github.com/mctools/mcpl/issues/88 USES= cmake:testing diff --git a/science/openmodelica/Makefile b/science/openmodelica/Makefile index dafafc57c8da..fd76e7f0a190 100644 --- a/science/openmodelica/Makefile +++ b/science/openmodelica/Makefile @@ -1,7 +1,6 @@ PORTNAME= openmodelica DISTVERSIONPREFIX= v -DISTVERSION= 1.25.1 -PORTREVISION= 1 +DISTVERSION= 1.25.2 CATEGORIES= science cad java DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} @@ -54,15 +53,15 @@ GH_PROJECT= OpenModelica SHEBANG_GLOB= *.sh *.in *.ac GH_TUPLE= \ - OpenModelica:OMOptim:f1036f43db18c5015da259771004cfb80e08a110:OpenModelica_OMOptim/OMOptim \ - OpenModelica:OMSimulator:46fa40f:OpenModelica_OMSimulator/OMSimulator \ + OpenModelica:OMOptim:d53288b:OpenModelica_OMOptim/OMOptim \ + OpenModelica:OMSimulator:e3a3aeb:OpenModelica_OMSimulator/OMSimulator \ OpenModelica:OMSimulator-3rdParty:5c10de1648d1134a577d9284b58580a72383d89f:OpenModelica_OMSimulator_3rdParty/OMSimulator/3rdParty \ OpenModelica:OMCompiler-3rdParty:520663f:OpenModelica_OMCompiler_3rdParty/OMCompiler/3rdParty \ OpenModelica:OMSens:093ad11:OpenModelica_OMSens/OMSens \ OpenModelica:OMSens_Qt:bab329a:OpenModelica_OMSens_Qt/OMSens_Qt \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMOptim/common \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMSens_Qt/common -GH_TUPLE+= OpenModelica:OMBootstrapping:91938f0acbdc6e9ba91114376e3640ca6147b579:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake +GH_TUPLE+= OpenModelica:OMBootstrapping:04d16f7461e5401321f0f72613daf466ae2f76be:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake # this should change make program everywhere, but it doesn't, # hence the patches in OMCompiler/Compiler/runtime/CMakeLists.txt, OMEdit/OMEditLIB/Simulation/SimulationOutputWidget.cpp diff --git a/science/openmodelica/distinfo b/science/openmodelica/distinfo index 66b481d27d53..56ac7fddde4b 100644 --- a/science/openmodelica/distinfo +++ b/science/openmodelica/distinfo @@ -1,19 +1,19 @@ -TIMESTAMP = 1750120788 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = f7d819fd7b838bad5ddbbd9ee585e49053464db68c0b9a406b2f9fea400ac2e5 -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = 148275827 -SHA256 (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 11189c8ab3fb9d22ed805271ef53b9698b0d41007a1708d7a77ef074a5b20447 -SIZE (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 4022842 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = eb5fbb88b2cf6a3556c43ee4c0b446fb26a70be06ddfb4031e50636dc1af1048 -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = 92370094 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 -SHA256 (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 -SIZE (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b -SIZE (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa -SIZE (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 -SHA256 (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 1a0327dabedd09dab3aa872af194b6d4e79bacc45659ea3154076e7f1f54b2cc -SIZE (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 3328929 +TIMESTAMP = 1756357301 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = a56f60074842f8b10c05d8ad323e89937b38ecbea0c9f062858f57d5ab8dbf7c +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = 148277183 +SHA256 (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = d5012951f43e90dce03d7866d221278ee11ddfbdac4db20fe43d93adbc3748e7 +SIZE (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = 4024177 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 6192d933c258950fb0171f5d0ddac0353632d17ee99f6974ba53dd654f547e49 +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 95557541 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 +SHA256 (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 +SIZE (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b +SIZE (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa +SIZE (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 +SHA256 (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 9ac6d28be6a331dfb61a57b033f2bcf984448cd63bc1a4cd140d60c2f5c64a79 +SIZE (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 3346859 diff --git a/science/openmodelica/pkg-plist b/science/openmodelica/pkg-plist index 2f3a85526399..9c08ba4f8e0a 100644 --- a/science/openmodelica/pkg-plist +++ b/science/openmodelica/pkg-plist @@ -778,12 +778,15 @@ share/OMSimulator/schema/fmi3/fmi3Type.xsd share/OMSimulator/schema/fmi3/fmi3Unit.xsd share/OMSimulator/schema/fmi3/fmi3Variable.xsd share/OMSimulator/schema/fmi3/fmi3VariableDependency.xsd +share/OMSimulator/schema/ssp/SSPTraceabilityCommon.xsd +share/OMSimulator/schema/ssp/SimulationResourceMetaData.xsd share/OMSimulator/schema/ssp/SystemStructureCommon.xsd share/OMSimulator/schema/ssp/SystemStructureDescription.xsd share/OMSimulator/schema/ssp/SystemStructureDescription11.xsd share/OMSimulator/schema/ssp/SystemStructureParameterMapping.xsd share/OMSimulator/schema/ssp/SystemStructureParameterValues.xsd share/OMSimulator/schema/ssp/SystemStructureSignalDictionary.xsd +share/OMSimulator/schema/ssp/xlink.xsd share/OMSimulator/scripts/OMSimulatorServer.py share/cmake/ZeroMQ/ZeroMQConfig.cmake share/cmake/ZeroMQ/ZeroMQConfigVersion.cmake diff --git a/science/packmol/Makefile b/science/packmol/Makefile index 627188fa12eb..8f1bef5e46ce 100644 --- a/science/packmol/Makefile +++ b/science/packmol/Makefile @@ -1,6 +1,6 @@ PORTNAME= packmol DISTVERSIONPREFIX= v -DISTVERSION= 21.0.4 +DISTVERSION= 21.1.0 CATEGORIES= science MAINTAINER= eduardo@FreeBSD.org diff --git a/science/packmol/distinfo b/science/packmol/distinfo index 1e7f2f2c9e84..a62a7e08f6a6 100644 --- a/science/packmol/distinfo +++ b/science/packmol/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752317019 -SHA256 (m3g-packmol-v21.0.4_GH0.tar.gz) = ca2398a6f8f2a326f52cda8e45a8818ea430a1b195fd3801d017e1a18f38fde8 -SIZE (m3g-packmol-v21.0.4_GH0.tar.gz) = 630743 +TIMESTAMP = 1755694551 +SHA256 (m3g-packmol-v21.1.0_GH0.tar.gz) = bcb64849bd490c329018210cf91375871108004ac8bf3e8cf9463e42e551fe46 +SIZE (m3g-packmol-v21.1.0_GH0.tar.gz) = 634772 diff --git a/science/paje/Makefile b/science/paje/Makefile index 6c6a554a8b5b..0d73a91fe8bf 100644 --- a/science/paje/Makefile +++ b/science/paje/Makefile @@ -1,6 +1,6 @@ PORTNAME= paje PORTVERSION= 1.97 -PORTREVISION= 12 +PORTREVISION= 13 CATEGORIES= science gnustep MASTER_SITES= SF/${PORTNAME}/Releases DISTNAME= Paje_${PORTVERSION} diff --git a/science/py-eccodes/Makefile b/science/py-eccodes/Makefile index 5f7093dce593..044eb813edc2 100644 --- a/science/py-eccodes/Makefile +++ b/science/py-eccodes/Makefile @@ -1,5 +1,5 @@ PORTNAME= eccodes -PORTVERSION= 2.42.0 +PORTVERSION= 2.43.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-eccodes/distinfo b/science/py-eccodes/distinfo index 21954c2072d6..e37fc89abc25 100644 --- a/science/py-eccodes/distinfo +++ b/science/py-eccodes/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750954222 -SHA256 (eccodes-2.42.0.tar.gz) = 0abb2bc6c6f4e83749c4e9c313d5428c62b15dc6c5b47d2807943e3a5ffd5291 -SIZE (eccodes-2.42.0.tar.gz) = 2268756 +TIMESTAMP = 1753796092 +SHA256 (eccodes-2.43.0.tar.gz) = b99c41aaa64b20291452297a3d513e0b08cc96bcedfe364d8f58348159c48faa +SIZE (eccodes-2.43.0.tar.gz) = 2269307 diff --git a/science/py-eccodes/files/patch-setup.py b/science/py-eccodes/files/patch-setup.py new file mode 100644 index 000000000000..8a15aeac70e2 --- /dev/null +++ b/science/py-eccodes/files/patch-setup.py @@ -0,0 +1,10 @@ +--- setup.py.orig 2025-07-25 10:03:25 UTC ++++ setup.py +@@ -90,7 +90,6 @@ install_requires += [ + "attrs", + "cffi", + "findlibs", +- "eccodeslib;platform_system!='Windows'", + ] + + setuptools.setup( diff --git a/science/qt6-quick3dphysics/distinfo b/science/qt6-quick3dphysics/distinfo index 03a1722c995d..8e99d6679edf 100644 --- a/science/qt6-quick3dphysics/distinfo +++ b/science/qt6-quick3dphysics/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749162772 -SHA256 (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 66e8365eb8c409a8426dec13a83203879f31845d555bf7632ce0728e8ddca24f -SIZE (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 4683360 +TIMESTAMP = 1756197855 +SHA256 (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 87fc6485638f52cd33dc1a755a11c78fd992e438fe77ef53e0ca57c63505cc8b +SIZE (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 4668516 diff --git a/science/smoldyn/Makefile b/science/smoldyn/Makefile index 965707c3adac..55178cea9aca 100644 --- a/science/smoldyn/Makefile +++ b/science/smoldyn/Makefile @@ -1,5 +1,5 @@ PORTNAME= smoldyn -DISTVERSION= 2.74 +DISTVERSION= 2.75 CATEGORIES= science MASTER_SITES= https://www.smoldyn.org/ @@ -32,8 +32,8 @@ PYTHON_CMAKE_BOOL= OPTION_PYTHON PYTHON_USES= python PYTHON_CMAKE_ON= -DPython3_EXECUTABLE=${PYTHON_CMD} PYTHON_BUILD_DEPENDS= ${PY_SETUPTOOLS} -PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} -PYTHON_BROKEN= pending biology/py-biosimulators-utils completion +#PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} +PYTHON_BROKEN= some python dependencies aren't ported post-extract: # see https://github.com/ssandrews/Smoldyn/issues/127 @${CHMOD} +x ${WRKSRC}/scripts/run_pyscript.py.in diff --git a/science/smoldyn/distinfo b/science/smoldyn/distinfo index 61749de73a7f..5083a957430a 100644 --- a/science/smoldyn/distinfo +++ b/science/smoldyn/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1737604798 -SHA256 (smoldyn-2.74.tgz) = 1abae836ac515092be14e2058af58a25981d7872c3a002fbff67bde0f64fa28a -SIZE (smoldyn-2.74.tgz) = 34348669 +TIMESTAMP = 1755906394 +SHA256 (smoldyn-2.75.tgz) = f7116e207d6ba91d3f709b6839d8054a622383ac6e0c5f81108015d083a2a094 +SIZE (smoldyn-2.75.tgz) = 34008076 diff --git a/science/step/distinfo b/science/step/distinfo index d0003f376b70..b2a6ad4575c2 100644 --- a/science/step/distinfo +++ b/science/step/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751381646 -SHA256 (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 0aa86e2dd0bebbd9da8b8b77d0da3cd924e25be7084accaf11850d51857fba3e -SIZE (KDE/release-service/25.04.3/step-25.04.3.tar.xz) = 987244 +TIMESTAMP = 1754646550 +SHA256 (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 994bab4d0750cfdeb3af1f92d6453ee173cd483e392ad170bf5250b23b4ddf3a +SIZE (KDE/release-service/25.08.0/step-25.08.0.tar.xz) = 1004072 diff --git a/science/step/pkg-plist b/science/step/pkg-plist index f0365a2c6bf1..4186212eb37b 100644 --- a/science/step/pkg-plist +++ b/science/step/pkg-plist @@ -133,6 +133,8 @@ share/locale/lt/LC_MESSAGES/step_example_files.mo share/locale/lt/LC_MESSAGES/step_objinfo_files.mo share/locale/lt/LC_MESSAGES/step_qt.qm share/locale/lv/LC_MESSAGES/step.mo +share/locale/lv/LC_MESSAGES/step_example_files.mo +share/locale/lv/LC_MESSAGES/step_objinfo_files.mo share/locale/lv/LC_MESSAGES/step_qt.qm share/locale/mai/LC_MESSAGES/step_qt.qm share/locale/ml/LC_MESSAGES/step.mo @@ -561,6 +563,23 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/examples/lt/solar.step %%DATADIR%%/examples/lt/springs.step %%DATADIR%%/examples/lt/wave.step +%%DATADIR%%/examples/lv/brownian.step +%%DATADIR%%/examples/lv/doublependulum.step +%%DATADIR%%/examples/lv/eightpendula.step +%%DATADIR%%/examples/lv/first.step +%%DATADIR%%/examples/lv/fourpendula.step +%%DATADIR%%/examples/lv/gas.step +%%DATADIR%%/examples/lv/graph.step +%%DATADIR%%/examples/lv/liquid.step +%%DATADIR%%/examples/lv/lissajous.step +%%DATADIR%%/examples/lv/motor.step +%%DATADIR%%/examples/lv/motor1.step +%%DATADIR%%/examples/lv/note.step +%%DATADIR%%/examples/lv/resonance.step +%%DATADIR%%/examples/lv/softbody.step +%%DATADIR%%/examples/lv/solar.step +%%DATADIR%%/examples/lv/springs.step +%%DATADIR%%/examples/lv/wave.step %%DATADIR%%/examples/ml/brownian.step %%DATADIR%%/examples/ml/doublependulum.step %%DATADIR%%/examples/ml/eightpendula.step @@ -1198,6 +1217,25 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/objinfo/l10n/lt/spring.html %%DATADIR%%/objinfo/l10n/lt/weightforce.html %%DATADIR%%/objinfo/l10n/lt/world.html +%%DATADIR%%/objinfo/l10n/lv/anchor.html +%%DATADIR%%/objinfo/l10n/lv/box.html +%%DATADIR%%/objinfo/l10n/lv/chargedparticle.html +%%DATADIR%%/objinfo/l10n/lv/coulombforce.html +%%DATADIR%%/objinfo/l10n/lv/disk.html +%%DATADIR%%/objinfo/l10n/lv/gas.html +%%DATADIR%%/objinfo/l10n/lv/gasljforce.html +%%DATADIR%%/objinfo/l10n/lv/gasparticle.html +%%DATADIR%%/objinfo/l10n/lv/gravitationforce.html +%%DATADIR%%/objinfo/l10n/lv/linearmotor.html +%%DATADIR%%/objinfo/l10n/lv/meter.html +%%DATADIR%%/objinfo/l10n/lv/note.html +%%DATADIR%%/objinfo/l10n/lv/particle.html +%%DATADIR%%/objinfo/l10n/lv/pin.html +%%DATADIR%%/objinfo/l10n/lv/polygon.html +%%DATADIR%%/objinfo/l10n/lv/softbody.html +%%DATADIR%%/objinfo/l10n/lv/spring.html +%%DATADIR%%/objinfo/l10n/lv/weightforce.html +%%DATADIR%%/objinfo/l10n/lv/world.html %%DATADIR%%/objinfo/l10n/ml/anchor.html %%DATADIR%%/objinfo/l10n/ml/box.html %%DATADIR%%/objinfo/l10n/ml/chargedparticle.html @@ -1555,6 +1593,11 @@ share/mime/packages/org.kde.step.xml %%DATADIR%%/tutorials/lt/tutorial3.step %%DATADIR%%/tutorials/lt/tutorial4.step %%DATADIR%%/tutorials/lt/tutorial5.step +%%DATADIR%%/tutorials/lv/tutorial1.step +%%DATADIR%%/tutorials/lv/tutorial2.step +%%DATADIR%%/tutorials/lv/tutorial3.step +%%DATADIR%%/tutorials/lv/tutorial4.step +%%DATADIR%%/tutorials/lv/tutorial5.step %%DATADIR%%/tutorials/ml/tutorial1.step %%DATADIR%%/tutorials/ml/tutorial2.step %%DATADIR%%/tutorials/ml/tutorial3.step diff --git a/science/tinker/Makefile b/science/tinker/Makefile index a62f2268609b..2406c4c31a27 100644 --- a/science/tinker/Makefile +++ b/science/tinker/Makefile @@ -1,5 +1,6 @@ PORTNAME= tinker DISTVERSION= 25.3 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://dasher.wustl.edu/tinker/downloads/ diff --git a/science/tinker/distinfo b/science/tinker/distinfo index 7ca60014bed4..6ebb852d7522 100644 --- a/science/tinker/distinfo +++ b/science/tinker/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753634645 -SHA256 (tinker-25.3.tar.gz) = d536f1d4d0d7d4394b3b3d88a52cf12ed3489312ac2ad9c6ce4d198bd681e36c -SIZE (tinker-25.3.tar.gz) = 80772142 +TIMESTAMP = 1755934058 +SHA256 (tinker-25.3.tar.gz) = 84744d00e2936be23be6ed6acbbc251f07e016db53ead079a270280539a42145 +SIZE (tinker-25.3.tar.gz) = 80772560 |