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-rw-r--r--science/afni/Makefile2
-rw-r--r--science/afni/distinfo6
-rw-r--r--science/afni/pkg-plist1
-rw-r--r--science/cdo/Makefile6
-rw-r--r--science/cdo/distinfo6
-rw-r--r--science/csvtk/Makefile2
-rw-r--r--science/dlib-cpp/Makefile2
-rw-r--r--science/dlib-cpp/distinfo6
-rw-r--r--science/dlib-cpp/pkg-plist4
-rw-r--r--science/mcpl/Makefile4
-rw-r--r--science/mcpl/distinfo6
-rw-r--r--science/molgif/Makefile2
-rw-r--r--science/py-dlib/Makefile3
-rw-r--r--science/py-dlib/distinfo6
-rw-r--r--science/py-dlib/files/patch-dlib_serialize.h11
-rw-r--r--science/py-dlib/files/patch-dlib_unicode_unicode.h11
16 files changed, 29 insertions, 49 deletions
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 4e81f12f071d..e4a18589ed3d 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -1,6 +1,6 @@
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
-DISTVERSION= 25.1.08
+DISTVERSION= 25.1.11
CATEGORIES= science biology graphics perl5 python
MAINTAINER= fernape@FreeBSD.org
diff --git a/science/afni/distinfo b/science/afni/distinfo
index cc36808f49c4..101614ad1b58 100644
--- a/science/afni/distinfo
+++ b/science/afni/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1746597097
-SHA256 (afni-afni-AFNI_25.1.08_GH0.tar.gz) = 300b83cee2f9e1bb3943a3eb5a2dcb18fecca9cb33f22bc2407789ca5c1631b6
-SIZE (afni-afni-AFNI_25.1.08_GH0.tar.gz) = 53278260
+TIMESTAMP = 1748174237
+SHA256 (afni-afni-AFNI_25.1.11_GH0.tar.gz) = f511ca076c51a3833258feba7394184aa1f85a75843d487571f2f7eef4c9e526
+SIZE (afni-afni-AFNI_25.1.11_GH0.tar.gz) = 53279637
diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist
index 813ef69e5567..3747916c791c 100644
--- a/science/afni/pkg-plist
+++ b/science/afni/pkg-plist
@@ -527,6 +527,7 @@ bin/afni_seeds_per_space.txt
bin/afni_skeleton.py
bin/afni_system_check.py
bin/afni_vcheck
+bin/afni_vlines_run_text.txt
bin/afnisumafatcat_logo_128sq.png
bin/afnisumafatcat_logo_905sq.png
bin/afnisumagui_logo_128sq.jpg
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index 7051f227dae6..3544e890ac51 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -1,7 +1,7 @@
PORTNAME= cdo
-PORTVERSION= 2.5.0
+PORTVERSION= 2.5.2
CATEGORIES= science
-MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/29786/ \
+MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/29938/ \
LOCAL/sunpoet
MAINTAINER= sunpoet@FreeBSD.org
@@ -26,8 +26,8 @@ CONFIGURE_ENV= PYTHON=${PYTHON_CMD}
GNU_CONFIGURE= yes
INSTALL_TARGET= install-strip
MAKE_JOBS_UNSAFE= yes
-TESTING_UNSAFE= 765 tests fail
TEST_TARGET= check
+TESTING_UNSAFE= 765 tests fail
USE_CXXSTD= c++20
USE_LDCONFIG= yes
diff --git a/science/cdo/distinfo b/science/cdo/distinfo
index 68eeaef6c47f..fea6c9bb59e8 100644
--- a/science/cdo/distinfo
+++ b/science/cdo/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1735837779
-SHA256 (cdo-2.5.0.tar.gz) = e865c05c1b52fd76b80e33421554db81b38b75210820bdc40e8690f4552f68e2
-SIZE (cdo-2.5.0.tar.gz) = 13553301
+TIMESTAMP = 1747715302
+SHA256 (cdo-2.5.2.tar.gz) = 3b28da72d75547663b1b9b08332bfe3f884d27742d0eeeb7f3c8b2c70f521fa9
+SIZE (cdo-2.5.2.tar.gz) = 13966550
diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile
index 7932341a584d..563205ea9120 100644
--- a/science/csvtk/Makefile
+++ b/science/csvtk/Makefile
@@ -1,7 +1,7 @@
PORTNAME= csvtk
DISTVERSIONPREFIX= v
DISTVERSION= 0.33.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MAINTAINER= jwb@FreeBSD.org
diff --git a/science/dlib-cpp/Makefile b/science/dlib-cpp/Makefile
index 617844a38ab6..98077e355d01 100644
--- a/science/dlib-cpp/Makefile
+++ b/science/dlib-cpp/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dlib
DISTVERSIONPREFIX=v
-DISTVERSION= 19.24.8
+DISTVERSION= 19.24.9
CATEGORIES= science devel math
PKGNAMESUFFIX= -cpp
diff --git a/science/dlib-cpp/distinfo b/science/dlib-cpp/distinfo
index 8f3862fa286a..0487c698a89c 100644
--- a/science/dlib-cpp/distinfo
+++ b/science/dlib-cpp/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1741012083
-SHA256 (davisking-dlib-v19.24.8_GH0.tar.gz) = 819cfd28639fe80ca28039f591a15e01772b7ada479de4a002b95bcb8077ce80
-SIZE (davisking-dlib-v19.24.8_GH0.tar.gz) = 18965261
+TIMESTAMP = 1747489988
+SHA256 (davisking-dlib-v19.24.9_GH0.tar.gz) = 65ff8debc3ffea84430bdd4992982082caf505404e16d986b7493c00f96f44e9
+SIZE (davisking-dlib-v19.24.9_GH0.tar.gz) = 18971864
diff --git a/science/dlib-cpp/pkg-plist b/science/dlib-cpp/pkg-plist
index 2efa18ced207..22217450563b 100644
--- a/science/dlib-cpp/pkg-plist
+++ b/science/dlib-cpp/pkg-plist
@@ -1051,6 +1051,8 @@ include/dlib/timer/timer_abstract.h
include/dlib/timer/timer_heavy.h
include/dlib/timing.h
include/dlib/tokenizer.h
+include/dlib/tokenizer/bpe_tokenizer.h
+include/dlib/tokenizer/bpe_tokenizer_abstract.h
include/dlib/tokenizer/tokenizer_kernel_1.h
include/dlib/tokenizer/tokenizer_kernel_abstract.h
include/dlib/tokenizer/tokenizer_kernel_c.h
@@ -1082,7 +1084,7 @@ lib/cmake/dlib/dlib.cmake
lib/cmake/dlib/dlibConfig.cmake
lib/cmake/dlib/dlibConfigVersion.cmake
lib/libdlib.so
-lib/libdlib.so.19.24.8
+lib/libdlib.so.19.24.9
libdata/pkgconfig/dlib-1.pc
@dir include/dlib/all
@dir include/dlib/cmake_utils/test_for_avx
diff --git a/science/mcpl/Makefile b/science/mcpl/Makefile
index c9a1ab93c9d6..7ee2ca520278 100644
--- a/science/mcpl/Makefile
+++ b/science/mcpl/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mcpl
DISTVERSIONPREFIX= v
-DISTVERSION= 2.0.0
+DISTVERSION= 2.2.0
CATEGORIES= science # physics
MAINTAINER= yuri@FreeBSD.org
@@ -22,6 +22,6 @@ GH_ACCOUNT= mctools
CMAKE_OFF= MCPL_ENABLE_TESTING
CMAKE_TESTING_ON= MCPL_ENABLE_TESTING
-# tests as of 2.0.0: 100% tests passed, 0 tests failed out of 27
+# tests as of 2.2.0: 100% tests passed, 0 tests failed out of 32
.include <bsd.port.mk>
diff --git a/science/mcpl/distinfo b/science/mcpl/distinfo
index 34a50e9299ba..b2b747457b55 100644
--- a/science/mcpl/distinfo
+++ b/science/mcpl/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1745570645
-SHA256 (mctools-mcpl-v2.0.0_GH0.tar.gz) = c451d86abf17181edb8c36cf77b6dcbbe22f1d3c30df84321f8c17eda7c5a873
-SIZE (mctools-mcpl-v2.0.0_GH0.tar.gz) = 338436
+TIMESTAMP = 1748077643
+SHA256 (mctools-mcpl-v2.2.0_GH0.tar.gz) = 0cd926621d7d45d2bb39fab64732448b67f622cda9434a105de4c9d942a3db5c
+SIZE (mctools-mcpl-v2.2.0_GH0.tar.gz) = 374448
diff --git a/science/molgif/Makefile b/science/molgif/Makefile
index 19ebca83657a..a0666ea10986 100644
--- a/science/molgif/Makefile
+++ b/science/molgif/Makefile
@@ -1,6 +1,6 @@
PORTNAME= molgif
DISTVERSION= g20180108
-PORTREVISION= 25
+PORTREVISION= 26
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/py-dlib/Makefile b/science/py-dlib/Makefile
index 520f5dc60851..f2135995472e 100644
--- a/science/py-dlib/Makefile
+++ b/science/py-dlib/Makefile
@@ -1,6 +1,5 @@
PORTNAME= dlib
-DISTVERSION= 19.24.6
-PORTREVISION= 2
+DISTVERSION= 19.24.9
CATEGORIES= science devel math python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-dlib/distinfo b/science/py-dlib/distinfo
index 93f2a9e4be33..02631ed74b01 100644
--- a/science/py-dlib/distinfo
+++ b/science/py-dlib/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1729934493
-SHA256 (dlib-19.24.6.tar.gz) = 77e3c28ac2c66141514b07cbb74b7c7f80381c019ce5fec99007980bc6490d7d
-SIZE (dlib-19.24.6.tar.gz) = 3374495
+TIMESTAMP = 1747503281
+SHA256 (dlib-19.24.9.tar.gz) = 211a233d1883f6340719b8f5c6a51fad7446702a1d2c7024e4a5053e599f7fb5
+SIZE (dlib-19.24.9.tar.gz) = 3390387
diff --git a/science/py-dlib/files/patch-dlib_serialize.h b/science/py-dlib/files/patch-dlib_serialize.h
deleted file mode 100644
index 94306df64159..000000000000
--- a/science/py-dlib/files/patch-dlib_serialize.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- dlib/serialize.h.orig 2024-02-17 21:44:22 UTC
-+++ dlib/serialize.h
-@@ -639,6 +639,8 @@ namespace dlib
- USE_DEFAULT_INT_SERIALIZATION_FOR(wchar_t)
- #endif
-
-+ USE_DEFAULT_INT_SERIALIZATION_FOR(char32_t)
-+
- // ----------------------------------------------------------------------------------------
-
- inline void serialize(
diff --git a/science/py-dlib/files/patch-dlib_unicode_unicode.h b/science/py-dlib/files/patch-dlib_unicode_unicode.h
deleted file mode 100644
index 4527fdc054b0..000000000000
--- a/science/py-dlib/files/patch-dlib_unicode_unicode.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- dlib/unicode/unicode.h.orig 2024-02-17 21:44:22 UTC
-+++ dlib/unicode/unicode.h
-@@ -16,7 +16,7 @@ namespace dlib
-
- // ----------------------------------------------------------------------------------------
-
-- using unichar = uint32;
-+ using unichar = char32_t;
- using ustring = std::basic_string<unichar>;
-
- // ----------------------------------------------------------------------------------------
generated by cgit v1.2.3 (git 2.25.1) at 2025-05-25 19:12:12 +0000