diff options
Diffstat (limited to 'science')
127 files changed, 273 insertions, 235 deletions
diff --git a/science/abinit/Makefile b/science/abinit/Makefile index 2347581589fd..ba4df25095f7 100644 --- a/science/abinit/Makefile +++ b/science/abinit/Makefile @@ -1,5 +1,5 @@ PORTNAME= abinit -DISTVERSION= 10.4.5 +DISTVERSION= 10.4.7 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -53,7 +53,8 @@ TEST_TARGET= tests_abirules tests_buildsys # Many tests print RuntimeError, http TEST_WRKSRC= ${WRKSRC}/abichecks PORTDOCS= * -BINARY_ALIAS= git=false +BINARY_ALIAS= git=false \ + gfortran=gfortran${GCC_DEFAULT} # for tests OPTIONS_DEFINE= DOCS OPENMP OPTIONS_DEFAULT= MPICH diff --git a/science/abinit/distinfo b/science/abinit/distinfo index 3cc29d915b5d..f008b4aac551 100644 --- a/science/abinit/distinfo +++ b/science/abinit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753132807 -SHA256 (abinit-abinit-10.4.5_GH0.tar.gz) = ccb3af00603f574208b6d5bea6f857d7040be5748e7a93a689ffad84eb6a65ce -SIZE (abinit-abinit-10.4.5_GH0.tar.gz) = 153582604 +TIMESTAMP = 1757275359 +SHA256 (abinit-abinit-10.4.7_GH0.tar.gz) = 51f91d30f8fbadf7bcc36928406188b8810ea183fd2b1b406be563bd9fcdedb7 +SIZE (abinit-abinit-10.4.7_GH0.tar.gz) = 154053477 diff --git a/science/afni/Makefile b/science/afni/Makefile index 03b6c1293688..c555c6c25e04 100644 --- a/science/afni/Makefile +++ b/science/afni/Makefile @@ -1,6 +1,6 @@ PORTNAME= afni DISTVERSIONPREFIX= AFNI_ -DISTVERSION= 25.2.08 +DISTVERSION= 25.2.09 CATEGORIES= science biology graphics perl5 python MAINTAINER= fernape@FreeBSD.org diff --git a/science/afni/distinfo b/science/afni/distinfo index 868bd723038d..4ec769ac8338 100644 --- a/science/afni/distinfo +++ b/science/afni/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1755363504 -SHA256 (afni-afni-AFNI_25.2.08_GH0.tar.gz) = 99738df9ba9c7bfb8489b5f3bdc63588fa62045353c97807b510e08d90beebe3 -SIZE (afni-afni-AFNI_25.2.08_GH0.tar.gz) = 53323276 +TIMESTAMP = 1756108500 +SHA256 (afni-afni-AFNI_25.2.09_GH0.tar.gz) = ff6aacf8a4f2b0b60ea584ece08e23db665488bfb1978957f05f30df6c394e05 +SIZE (afni-afni-AFNI_25.2.09_GH0.tar.gz) = 53321640 diff --git a/science/agrum/Makefile b/science/agrum/Makefile index ff6dce0acfc3..e65dbffd8d4e 100644 --- a/science/agrum/Makefile +++ b/science/agrum/Makefile @@ -1,5 +1,6 @@ PORTNAME= agrum DISTVERSION= 2.2.0 +PORTREVISION= 1 CATEGORIES= science math MAINTAINER= yuri@FreeBSD.org diff --git a/science/atompaw/Makefile b/science/atompaw/Makefile index 61ccc526fadb..5e23ebdb9006 100644 --- a/science/atompaw/Makefile +++ b/science/atompaw/Makefile @@ -1,6 +1,6 @@ PORTNAME= atompaw DISTVERSION= 4.2.0.3 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= http://users.wfu.edu/natalie/papers/pwpaw/ @@ -16,6 +16,7 @@ LIB_DEPENDS= liblapack.so:math/lapack \ USES= fortran gmake libtool GNU_CONFIGURE= yes +CONFIGURE_ARGS= --with-linalg-prefix=${LOCALBASE} OPTIONS_DEFINE= DOCS LIBXC OPTIONS_DEFAULT= LIBXC diff --git a/science/atompaw/files/patch-src_input__dataset__mod.F90 b/science/atompaw/files/patch-src_input__dataset__mod.F90 new file mode 100644 index 000000000000..cca7d9e3d6ae --- /dev/null +++ b/science/atompaw/files/patch-src_input__dataset__mod.F90 @@ -0,0 +1,11 @@ +--- src/input_dataset_mod.F90.orig 2023-06-02 20:37:00 UTC ++++ src/input_dataset_mod.F90 +@@ -2097,7 +2097,7 @@ END IF + INTEGER :: input_unit,echo_unit + INTEGER :: i_all,i_dx,i_xmin,i_zmesh,i_range + LOGICAL :: has_to_echo +- CHARACTER(200) :: inputline ++ CHARACTER(256) :: inputline + TYPE(input_dataset_t),POINTER :: dataset + + !------------------------------------------------------------------ diff --git a/science/berkeleygw/Makefile b/science/berkeleygw/Makefile index 36f76867eaaa..bc988171c441 100644 --- a/science/berkeleygw/Makefile +++ b/science/berkeleygw/Makefile @@ -18,7 +18,7 @@ BUILD_DEPENDS= bash:shells/bash LIB_DEPENDS= libfftw3.so:math/fftw3 RUN_DEPENDS= bash:shells/bash -USES= blaslapack:openblas gmake fortran python shebangfix +USES= blaslapack:openblas gmake fortran:gfortran python shebangfix SHEBANG_GLOB= *.sh *.py *awk diff --git a/science/bout++-merging-filaments/Makefile b/science/bout++-merging-filaments/Makefile index ccb4d19ed74d..be54402f7732 100644 --- a/science/bout++-merging-filaments/Makefile +++ b/science/bout++-merging-filaments/Makefile @@ -1,6 +1,6 @@ PORTNAME= bout++-merging-filaments DISTVERSION= g20200812 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science # physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/bout++/Makefile b/science/bout++/Makefile index 43b9accad186..2e49f217994d 100644 --- a/science/bout++/Makefile +++ b/science/bout++/Makefile @@ -1,7 +1,7 @@ PORTNAME= bout++ DISTVERSIONPREFIX= v DISTVERSION= 5.1.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science math # physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/cantera/Makefile b/science/cantera/Makefile index 61a965965fe2..aea50ad6e4a7 100644 --- a/science/cantera/Makefile +++ b/science/cantera/Makefile @@ -1,7 +1,7 @@ PORTNAME= cantera DISTVERSIONPREFIX= v DISTVERSION= 3.1.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science # chemistry physics MAINTAINER= yuri@FreeBSD.org diff --git a/science/cdf/Makefile b/science/cdf/Makefile index edc94cf929c9..f1b4b8b150c5 100644 --- a/science/cdf/Makefile +++ b/science/cdf/Makefile @@ -23,7 +23,6 @@ MAKE_FLAGS= INSTALLDIR=${STAGEDIR}${PREFIX} OS=freebsd ENV=gnu \ FORTRAN=yes FC_freebsd=${F77} MAKE_JOBS_UNSAFE= yes TEST_TARGET= test # XXX: test segfaults -FFLAGS+= -std=legacy WRKSRC= ${WRKDIR}/cdf${VER}-dist SUB_FILES= pkg-message @@ -37,6 +36,12 @@ OPTIONS_DEFINE= DOCS EXAMPLES MAKE_ARGS+= OS=freebsd ENV=gnu all +.include <bsd.port.pre.mk> + +.if ${FORTRAN_DEFAULT} != flang +FFLAGS= -std=legacy +.endif + post-patch: .for def in ${DEFS} @${REINPLACE_CMD} -e 's|<path>|${PREFIX}|' \ @@ -51,4 +56,4 @@ post-install: ${SED} -i '' 's,${STAGEDIR},,g' ${STAGEDIR}${PREFIX}/bin/definitions.? ${RM} -f ${STAGEDIR}${PREFIX}/CDFLeapSeconds.txt -.include <bsd.port.mk> +.include <bsd.port.post.mk> diff --git a/science/cdo/Makefile b/science/cdo/Makefile index 783eae420b68..43c111203c7c 100644 --- a/science/cdo/Makefile +++ b/science/cdo/Makefile @@ -1,8 +1,7 @@ PORTNAME= cdo -PORTVERSION= 2.5.2 -PORTREVISION= 1 +PORTVERSION= 2.5.3 CATEGORIES= science -MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/29938/ \ +MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/30034/ \ LOCAL/sunpoet MAINTAINER= sunpoet@FreeBSD.org diff --git a/science/cdo/distinfo b/science/cdo/distinfo index fea6c9bb59e8..99abd7f5e917 100644 --- a/science/cdo/distinfo +++ b/science/cdo/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1747715302 -SHA256 (cdo-2.5.2.tar.gz) = 3b28da72d75547663b1b9b08332bfe3f884d27742d0eeeb7f3c8b2c70f521fa9 -SIZE (cdo-2.5.2.tar.gz) = 13966550 +TIMESTAMP = 1755062464 +SHA256 (cdo-2.5.3.tar.gz) = 0145cdba866a02b3e9b269e2ff7728ce61e21761332888041f05dc033676fa08 +SIZE (cdo-2.5.3.tar.gz) = 14007141 diff --git a/science/cdo/files/patch-powerpc64 b/science/cdo/files/patch-powerpc64 index f903f05da1fc..5d6dd67a4dc3 100644 --- a/science/cdo/files/patch-powerpc64 +++ b/science/cdo/files/patch-powerpc64 @@ -1,4 +1,4 @@ ---- libcdi/src/cgribexlib.c.orig 2024-02-02 10:51:13 UTC +--- libcdi/src/cgribexlib.c.orig 2025-07-14 15:03:05 UTC +++ libcdi/src/cgribexlib.c @@ -10,7 +10,7 @@ #pragma GCC diagnostic warning "-Wstrict-overflow" @@ -9,31 +9,31 @@ #pragma options nostrict #include <ppu_intrinsics.h> #endif -@@ -766,21 +766,21 @@ pwr6_minmax_val_double_unrolled6(const double *restric +@@ -752,21 +752,21 @@ pwr6_minmax_val_double_unrolled6(const double *restric + { + for (size_t j = 0; j < __UNROLL_DEPTH_1; ++j) { - for (size_t j = 0; j < __UNROLL_DEPTH_1; ++j) - { -- dmin[j] = __fsel(dmin[j] - data[i + j], data[i + j], dmin[j]); -- dmax[j] = __fsel(data[i + j] - dmax[j], data[i + j], dmax[j]); -+ dmin[j] = __builtin_ppc_fsel(dmin[j] - data[i + j], data[i + j], dmin[j]); -+ dmax[j] = __builtin_ppc_fsel(data[i + j] - dmax[j], data[i + j], dmax[j]); - } +- dmin[j] = __fsel(dmin[j] - data[i + j], data[i + j], dmin[j]); +- dmax[j] = __fsel(data[i + j] - dmax[j], data[i + j], dmax[j]); ++ dmin[j] = __builtin_ppc_fsel(dmin[j] - data[i + j], data[i + j], dmin[j]); ++ dmax[j] = __builtin_ppc_fsel(data[i + j] - dmax[j], data[i + j], dmax[j]); } + } for (size_t j = 0; j < residual; ++j) - { -- dmin[j] = __fsel(dmin[j] - data[ofs + j], data[ofs + j], dmin[j]); -- dmax[j] = __fsel(data[ofs + j] - dmax[j], data[ofs + j], dmax[j]); -+ dmin[j] = __builtin_ppc_fsel(dmin[j] - data[ofs + j], data[ofs + j], dmin[j]); -+ dmax[j] = __builtin_ppc_fsel(data[ofs + j] - dmax[j], data[ofs + j], dmax[j]); - } + { +- dmin[j] = __fsel(dmin[j] - data[ofs + j], data[ofs + j], dmin[j]); +- dmax[j] = __fsel(data[ofs + j] - dmax[j], data[ofs + j], dmax[j]); ++ dmin[j] = __builtin_ppc_fsel(dmin[j] - data[ofs + j], data[ofs + j], dmin[j]); ++ dmax[j] = __builtin_ppc_fsel(data[ofs + j] - dmax[j], data[ofs + j], dmax[j]); + } for (size_t j = 0; j < __UNROLL_DEPTH_1; ++j) - { -- *fmin = __fsel(*fmin - dmin[j], dmin[j], *fmin); -- *fmax = __fsel(dmax[j] - *fmax, dmax[j], *fmax); -+ *fmin = __builtin_ppc_fsel(*fmin - dmin[j], dmin[j], *fmin); -+ *fmax = __builtin_ppc_fsel(dmax[j] - *fmax, dmax[j], *fmax); - } + { +- *fmin = __fsel(*fmin - dmin[j], dmin[j], *fmin); +- *fmax = __fsel(dmax[j] - *fmax, dmax[j], *fmax); ++ *fmin = __builtin_ppc_fsel(*fmin - dmin[j], dmin[j], *fmin); ++ *fmax = __builtin_ppc_fsel(dmax[j] - *fmax, dmax[j], *fmax); + } } #undef __UNROLL_DEPTH_1 diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile index 471819e7794c..45a191615689 100644 --- a/science/cgnslib/Makefile +++ b/science/cgnslib/Makefile @@ -23,7 +23,7 @@ MAKE_JOBS_UNSAFE= yes #CMAKE_ARGS= -DOpenGL_GL_PREFERENCE:STRING="GLVND" CMAKE_ARGS= -DOpenGL_GL_PREFERENCE:STRING="LEGACY" -FFLAGS+= -fPIC -std=legacy +FFLAGS= -fPIC TEST_TARGET= test OPTIONS_DEFINE= FORTRAN HDF5 TESTS TOOLS @@ -59,6 +59,10 @@ TOOLS_CMAKE_ON= -DTCL_INCLUDE_PATH:STRING="${TCL_INCLUDEDIR}" \ CFLAGS+= -Wno-error=incompatible-function-pointer-types .endif +.if ${FORTRAN_DEFAULT} != flang +FFLAGS+= -std=legacy +.endif + pre-configure: ${REINPLACE_CMD} -e 's|tk-private/||' ${WRKSRC}/src/cgnstools/tkogl/tkogl.c diff --git a/science/code_saturne/Makefile b/science/code_saturne/Makefile index e1ea21b89e25..3431d8506e0c 100644 --- a/science/code_saturne/Makefile +++ b/science/code_saturne/Makefile @@ -1,6 +1,6 @@ PORTNAME= code_saturne PORTVERSION= 8.1.1 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science parallel MASTER_SITES= https://www.code-saturne.org/releases/ diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile index e4b2b99739a4..acaa471d2f00 100644 --- a/science/csvtk/Makefile +++ b/science/csvtk/Makefile @@ -1,7 +1,7 @@ PORTNAME= csvtk DISTVERSIONPREFIX= v DISTVERSION= 0.34.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= jwb@FreeBSD.org diff --git a/science/fastjet/Makefile b/science/fastjet/Makefile index 8990a1950f62..00a5ee17b4c4 100644 --- a/science/fastjet/Makefile +++ b/science/fastjet/Makefile @@ -1,5 +1,5 @@ PORTNAME= fastjet -DISTVERSION= 3.4.3 +DISTVERSION= 3.5.1 CATEGORIES= science MASTER_SITES= https://fastjet.fr/repo/ @@ -46,7 +46,7 @@ post-install: @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/lib*.so* post-install-PYTHON-on: - @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet.so.0.0.0 + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_fastjet_swig.so.0.0.0 do-test: # python tests diff --git a/science/fastjet/distinfo b/science/fastjet/distinfo index c318c545d2f6..896e7e12357e 100644 --- a/science/fastjet/distinfo +++ b/science/fastjet/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1730346663 -SHA256 (fastjet-3.4.3.tar.gz) = cc175471bfab8656b8c6183a8e5e9ad05d5f7506e46f3212a9a8230905b8f6a3 -SIZE (fastjet-3.4.3.tar.gz) = 2984798 +TIMESTAMP = 1755888400 +SHA256 (fastjet-3.5.1.tar.gz) = 9a4154163e72041dee3fdde9cb24e814625e178091a8734a6ad5375e5371b423 +SIZE (fastjet-3.5.1.tar.gz) = 3069022 diff --git a/science/fastjet/pkg-plist b/science/fastjet/pkg-plist index 35b8c8caf328..5f83019a7641 100644 --- a/science/fastjet/pkg-plist +++ b/science/fastjet/pkg-plist @@ -129,11 +129,12 @@ lib/libsiscone_spherical.so lib/libsiscone_spherical.so.0 lib/libsiscone_spherical.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-1.pyc +%%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.opt-2.pyc %%PYTHON%%%%PYTHON_SITELIBDIR%%/__pycache__/fastjet%%PYTHON_TAG%%.pyc -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.a -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0 -%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet.so.0.0.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.a +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0 +%%PYTHON%%%%PYTHON_SITELIBDIR%%/_fastjet_swig.so.0.0.0 %%PYTHON%%%%PYTHON_SITELIBDIR%%/fastjet.py %%PYTHON%%%%DATADIR%%/pyinterface/FastJetPythonExtensions.hh %%PYTHON%%%%DATADIR%%/pyinterface/fastjet-doc.i diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index bcc3ee4ec241..fc27b0db4de8 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -1,6 +1,6 @@ PORTNAME= gnudatalanguage PORTVERSION= 1.1.1 -PORTREVISION= 1 +PORTREVISION= 2 DISTVERSIONPREFIX= v CATEGORIES= science lang MASTER_SITES= https://github.com/${PORTNAME}/gdl/releases/download/v${PORTVERSION}/ diff --git a/science/gramps/Makefile b/science/gramps/Makefile index f261cd0a1aa4..be05bc98c53f 100644 --- a/science/gramps/Makefile +++ b/science/gramps/Makefile @@ -1,5 +1,5 @@ PORTNAME= gramps -DISTVERSION= 6.0.4 +DISTVERSION= 6.0.5 CATEGORIES= science gnome python MASTER_SITES= PYPI diff --git a/science/gramps/distinfo b/science/gramps/distinfo index 30016e379016..3e0a307bfe15 100644 --- a/science/gramps/distinfo +++ b/science/gramps/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1754945114 -SHA256 (gramps-6.0.4.tar.gz) = ebabb1cfa8dc61859ee0e9c4ad0b54c94ccff2809dd1b0895a38a46b80382692 -SIZE (gramps-6.0.4.tar.gz) = 21963080 +TIMESTAMP = 1757244514 +SHA256 (gramps-6.0.5.tar.gz) = 2160e04ec7033838e48fe3c68cfd4f383bec4e6f5398e207250b76687923e2dc +SIZE (gramps-6.0.5.tar.gz) = 22268263 diff --git a/science/kim-api/Makefile b/science/kim-api/Makefile index bcfc3fe9f454..154452adc611 100644 --- a/science/kim-api/Makefile +++ b/science/kim-api/Makefile @@ -1,12 +1,12 @@ PORTNAME= kim-api -DISTVERSION= 2.3.0 -PORTREVISION= 1 +DISTVERSION= 2.4.1 CATEGORIES= science MASTER_SITES= https://s3.openkim.org/kim-api/ MAINTAINER= yuri@FreeBSD.org COMMENT= Framework for reliable, reproducible, portable molecular simulations -WWW= https://openkim.org/ +WWW= https://openkim.org/ \ + https://github.com/openkim/kim-api LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/LICENSE.LGPL diff --git a/science/kim-api/distinfo b/science/kim-api/distinfo index 34ec678ecd72..aa9436bebfa7 100644 --- a/science/kim-api/distinfo +++ b/science/kim-api/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1647738438 -SHA256 (kim-api-2.3.0.txz) = 93673bb8fbc0625791f2ee67915d1672793366d10cabc63e373196862c14f991 -SIZE (kim-api-2.3.0.txz) = 357580 +TIMESTAMP = 1757122898 +SHA256 (kim-api-2.4.1.txz) = 225e3136d43e416a4424551e9e5f6d92cc6ecfe11389a1b6e97d6dcdfed83d44 +SIZE (kim-api-2.4.1.txz) = 364020 diff --git a/science/kim-api/pkg-plist b/science/kim-api/pkg-plist index 544dee8e567d..8ad13559dacb 100644 --- a/science/kim-api/pkg-plist +++ b/science/kim-api/pkg-plist @@ -134,8 +134,9 @@ lib/kim-api/portable-models/ex_model_Ar_SLJ_MultiCutoff/libkim-api-portable-mode lib/kim-api/simulator-models/Sim_LAMMPS_LJcut_AkersonElliott_Alchemy_PbAu/libkim-api-simulator-model.so lib/libkim-api.so lib/libkim-api.so.2 -lib/libkim-api.so.2.3.0 +lib/libkim-api.so.2.4.1 libdata/pkgconfig/libkim-api.pc +libexec/kim-api/kim-api-base64-encode libexec/kim-api/kim-api-collections-info libexec/kim-api/kim-api-portable-model-info libexec/kim-api/kim-api-shared-library-test diff --git a/science/meep/Makefile b/science/meep/Makefile index 1c26a64c010f..a2187234803b 100644 --- a/science/meep/Makefile +++ b/science/meep/Makefile @@ -1,7 +1,7 @@ PORTNAME= meep DISTVERSIONPREFIX= v DISTVERSION= 1.29.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= science cad MAINTAINER= yuri@FreeBSD.org diff --git a/science/molgif/Makefile b/science/molgif/Makefile index 280dc2503615..9998275f996b 100644 --- a/science/molgif/Makefile +++ b/science/molgif/Makefile @@ -1,6 +1,6 @@ PORTNAME= molgif DISTVERSION= g20180108 -PORTREVISION= 29 +PORTREVISION= 30 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/openmodelica/Makefile b/science/openmodelica/Makefile index dafafc57c8da..fd76e7f0a190 100644 --- a/science/openmodelica/Makefile +++ b/science/openmodelica/Makefile @@ -1,7 +1,6 @@ PORTNAME= openmodelica DISTVERSIONPREFIX= v -DISTVERSION= 1.25.1 -PORTREVISION= 1 +DISTVERSION= 1.25.2 CATEGORIES= science cad java DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} @@ -54,15 +53,15 @@ GH_PROJECT= OpenModelica SHEBANG_GLOB= *.sh *.in *.ac GH_TUPLE= \ - OpenModelica:OMOptim:f1036f43db18c5015da259771004cfb80e08a110:OpenModelica_OMOptim/OMOptim \ - OpenModelica:OMSimulator:46fa40f:OpenModelica_OMSimulator/OMSimulator \ + OpenModelica:OMOptim:d53288b:OpenModelica_OMOptim/OMOptim \ + OpenModelica:OMSimulator:e3a3aeb:OpenModelica_OMSimulator/OMSimulator \ OpenModelica:OMSimulator-3rdParty:5c10de1648d1134a577d9284b58580a72383d89f:OpenModelica_OMSimulator_3rdParty/OMSimulator/3rdParty \ OpenModelica:OMCompiler-3rdParty:520663f:OpenModelica_OMCompiler_3rdParty/OMCompiler/3rdParty \ OpenModelica:OMSens:093ad11:OpenModelica_OMSens/OMSens \ OpenModelica:OMSens_Qt:bab329a:OpenModelica_OMSens_Qt/OMSens_Qt \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMOptim/common \ OpenModelica:OpenModelica-common:08a01802db5ba5edb540383c46718b89ff229ef2:OpenModelica_OpenModelica_common/OMSens_Qt/common -GH_TUPLE+= OpenModelica:OMBootstrapping:91938f0acbdc6e9ba91114376e3640ca6147b579:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake +GH_TUPLE+= OpenModelica:OMBootstrapping:04d16f7461e5401321f0f72613daf466ae2f76be:bootstrapping/OMCompiler/Compiler/boot/bomc # downloaded by cmake # this should change make program everywhere, but it doesn't, # hence the patches in OMCompiler/Compiler/runtime/CMakeLists.txt, OMEdit/OMEditLIB/Simulation/SimulationOutputWidget.cpp diff --git a/science/openmodelica/distinfo b/science/openmodelica/distinfo index 66b481d27d53..56ac7fddde4b 100644 --- a/science/openmodelica/distinfo +++ b/science/openmodelica/distinfo @@ -1,19 +1,19 @@ -TIMESTAMP = 1750120788 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = f7d819fd7b838bad5ddbbd9ee585e49053464db68c0b9a406b2f9fea400ac2e5 -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-v1.25.1_GH0.tar.gz) = 148275827 -SHA256 (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 11189c8ab3fb9d22ed805271ef53b9698b0d41007a1708d7a77ef074a5b20447 -SIZE (openmodelica-1.25.1/OpenModelica-OMOptim-f1036f43db18c5015da259771004cfb80e08a110_GH0.tar.gz) = 4022842 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = eb5fbb88b2cf6a3556c43ee4c0b446fb26a70be06ddfb4031e50636dc1af1048 -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-46fa40f_GH0.tar.gz) = 92370094 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d -SIZE (openmodelica-1.25.1/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 -SHA256 (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 -SIZE (openmodelica-1.25.1/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b -SIZE (openmodelica-1.25.1/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 -SHA256 (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa -SIZE (openmodelica-1.25.1/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 -SHA256 (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a -SIZE (openmodelica-1.25.1/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 -SHA256 (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 1a0327dabedd09dab3aa872af194b6d4e79bacc45659ea3154076e7f1f54b2cc -SIZE (openmodelica-1.25.1/OpenModelica-OMBootstrapping-91938f0acbdc6e9ba91114376e3640ca6147b579_GH0.tar.gz) = 3328929 +TIMESTAMP = 1756357301 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = a56f60074842f8b10c05d8ad323e89937b38ecbea0c9f062858f57d5ab8dbf7c +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-v1.25.2_GH0.tar.gz) = 148277183 +SHA256 (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = d5012951f43e90dce03d7866d221278ee11ddfbdac4db20fe43d93adbc3748e7 +SIZE (openmodelica-1.25.2/OpenModelica-OMOptim-d53288b_GH0.tar.gz) = 4024177 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 6192d933c258950fb0171f5d0ddac0353632d17ee99f6974ba53dd654f547e49 +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-e3a3aeb_GH0.tar.gz) = 95557541 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = ea57e90ea76eca2657e8ddaa6c87301a16661200b3e8a00347a12bfdbb5f973d +SIZE (openmodelica-1.25.2/OpenModelica-OMSimulator-3rdParty-5c10de1648d1134a577d9284b58580a72383d89f_GH0.tar.gz) = 7637943 +SHA256 (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 37c82357fc1e862eb13d79cf1ff2d143f263502472db9bb2c350c0c551022954 +SIZE (openmodelica-1.25.2/OpenModelica-OMCompiler-3rdParty-520663f_GH0.tar.gz) = 50256095 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 335512c08f94902bb07e75278cea791370a551336272f7bebef8c707ef5e5e2b +SIZE (openmodelica-1.25.2/OpenModelica-OMSens-093ad11_GH0.tar.gz) = 8871049 +SHA256 (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 2f2dcba4defd7f13e9fd5e0c26bb4951b9f1fcc7da64960a6ad1cee32a628efa +SIZE (openmodelica-1.25.2/OpenModelica-OMSens_Qt-bab329a_GH0.tar.gz) = 211270 +SHA256 (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = fdb5bb442da0375373ef221cf26195114bf149511c1c2be051caad6301c21c9a +SIZE (openmodelica-1.25.2/OpenModelica-OpenModelica-common-08a01802db5ba5edb540383c46718b89ff229ef2_GH0.tar.gz) = 36148 +SHA256 (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 9ac6d28be6a331dfb61a57b033f2bcf984448cd63bc1a4cd140d60c2f5c64a79 +SIZE (openmodelica-1.25.2/OpenModelica-OMBootstrapping-04d16f7461e5401321f0f72613daf466ae2f76be_GH0.tar.gz) = 3346859 diff --git a/science/openmodelica/pkg-plist b/science/openmodelica/pkg-plist index 2f3a85526399..9c08ba4f8e0a 100644 --- a/science/openmodelica/pkg-plist +++ b/science/openmodelica/pkg-plist @@ -778,12 +778,15 @@ share/OMSimulator/schema/fmi3/fmi3Type.xsd share/OMSimulator/schema/fmi3/fmi3Unit.xsd share/OMSimulator/schema/fmi3/fmi3Variable.xsd share/OMSimulator/schema/fmi3/fmi3VariableDependency.xsd +share/OMSimulator/schema/ssp/SSPTraceabilityCommon.xsd +share/OMSimulator/schema/ssp/SimulationResourceMetaData.xsd share/OMSimulator/schema/ssp/SystemStructureCommon.xsd share/OMSimulator/schema/ssp/SystemStructureDescription.xsd share/OMSimulator/schema/ssp/SystemStructureDescription11.xsd share/OMSimulator/schema/ssp/SystemStructureParameterMapping.xsd share/OMSimulator/schema/ssp/SystemStructureParameterValues.xsd share/OMSimulator/schema/ssp/SystemStructureSignalDictionary.xsd +share/OMSimulator/schema/ssp/xlink.xsd share/OMSimulator/scripts/OMSimulatorServer.py share/cmake/ZeroMQ/ZeroMQConfig.cmake share/cmake/ZeroMQ/ZeroMQConfigVersion.cmake diff --git a/science/packmol/Makefile b/science/packmol/Makefile index 627188fa12eb..8f1bef5e46ce 100644 --- a/science/packmol/Makefile +++ b/science/packmol/Makefile @@ -1,6 +1,6 @@ PORTNAME= packmol DISTVERSIONPREFIX= v -DISTVERSION= 21.0.4 +DISTVERSION= 21.1.0 CATEGORIES= science MAINTAINER= eduardo@FreeBSD.org diff --git a/science/packmol/distinfo b/science/packmol/distinfo index 1e7f2f2c9e84..a62a7e08f6a6 100644 --- a/science/packmol/distinfo +++ b/science/packmol/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752317019 -SHA256 (m3g-packmol-v21.0.4_GH0.tar.gz) = ca2398a6f8f2a326f52cda8e45a8818ea430a1b195fd3801d017e1a18f38fde8 -SIZE (m3g-packmol-v21.0.4_GH0.tar.gz) = 630743 +TIMESTAMP = 1755694551 +SHA256 (m3g-packmol-v21.1.0_GH0.tar.gz) = bcb64849bd490c329018210cf91375871108004ac8bf3e8cf9463e42e551fe46 +SIZE (m3g-packmol-v21.1.0_GH0.tar.gz) = 634772 diff --git a/science/paraview/Makefile b/science/paraview/Makefile index 4e69796ed499..e657e04d7f84 100644 --- a/science/paraview/Makefile +++ b/science/paraview/Makefile @@ -1,6 +1,6 @@ PORTNAME= paraview DISTVERSION= ${PARAVIEW_VER}.3 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science graphics MASTER_SITES= http://www.paraview.org/files/v${PARAVIEW_VER}/ DISTNAME= ParaView-v${PORTVERSION} diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile index 05829ebeef97..e131d647de3b 100644 --- a/science/pnetcdf/Makefile +++ b/science/pnetcdf/Makefile @@ -1,5 +1,5 @@ PORTNAME= pnetcdf -PORTVERSION= 1.14.0 +PORTVERSION= 1.14.1 CATEGORIES= science parallel MASTER_SITES= https://parallel-netcdf.github.io/Release/ \ LOCAL/sunpoet diff --git a/science/pnetcdf/distinfo b/science/pnetcdf/distinfo index c6351e3b6792..17dd83110f2f 100644 --- a/science/pnetcdf/distinfo +++ b/science/pnetcdf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1736671217 -SHA256 (pnetcdf-1.14.0.tar.gz) = 575f189fb01c53f93b3d6ae0e506f46e19694807c81af0b9548e947995acf704 -SIZE (pnetcdf-1.14.0.tar.gz) = 2419346 +TIMESTAMP = 1757120530 +SHA256 (pnetcdf-1.14.1.tar.gz) = 6f0f7221006c211fce9ddd2c008796b8c69dd717b2ad1be0b4027fc328fd3220 +SIZE (pnetcdf-1.14.1.tar.gz) = 2512984 diff --git a/science/pnetcdf/files/patch-src-packaging-Makefile.in b/science/pnetcdf/files/patch-src-packaging-Makefile.in deleted file mode 100644 index 6b5360cc75d6..000000000000 --- a/science/pnetcdf/files/patch-src-packaging-Makefile.in +++ /dev/null @@ -1,11 +0,0 @@ ---- src/packaging/Makefile.in.orig 2024-11-11 22:32:47 UTC -+++ src/packaging/Makefile.in -@@ -637,7 +637,7 @@ install-data-hook: - # GNU autoconf allows DESTDIR variable when running 'make install' which will - # prepend it before all installation names. - install-data-hook: -- $(SED_I) -e 's|INSTALL_PREFIX|$(DESTDIR)$(prefix)|g ; s|INSTALL_EXEC_PREFIX|$(DESTDIR)$(exec_prefix)|g' $(DESTDIR)$(prefix)/libdata/pkgconfig/pnetcdf.pc -+ $(SED_I) -e 's|INSTALL_PREFIX|$(prefix)|g ; s|INSTALL_EXEC_PREFIX|$(exec_prefix)|g' $(DESTDIR)$(prefix)/libdata/pkgconfig/pnetcdf.pc - - # Tell versions [3.59,3.63) of GNU make to not export all variables. - # Otherwise a system limit (for SysV at least) may be exceeded. diff --git a/science/pnetcdf/files/patch-src-utils-Makefile.in b/science/pnetcdf/files/patch-src-utils-Makefile.in deleted file mode 100644 index f91866b7caab..000000000000 --- a/science/pnetcdf/files/patch-src-utils-Makefile.in +++ /dev/null @@ -1,11 +0,0 @@ ---- src/utils/Makefile.in.orig 2024-11-11 22:32:47 UTC -+++ src/utils/Makefile.in -@@ -856,7 +856,7 @@ install-exec-hook: - # GNU autoconf allows DESTDIR variable when running 'make install' which will - # prepend it before all installation names. - install-exec-hook: -- $(SED_I) -e 's|INSTALL_PREFIX|$(DESTDIR)$(prefix)|g ; s|INSTALL_EXEC_PREFIX|$(DESTDIR)$(exec_prefix)|g' $(DESTDIR)$(bindir)/pnetcdf-config -+ $(SED_I) -e 's|INSTALL_PREFIX|$(prefix)|g ; s|INSTALL_EXEC_PREFIX|$(exec_prefix)|g' $(DESTDIR)$(bindir)/pnetcdf-config - chmod +x $(DESTDIR)$(bindir)/pnetcdf-config - - # Tell versions [3.59,3.63) of GNU make to not export all variables. diff --git a/science/pnetcdf/pkg-plist b/science/pnetcdf/pkg-plist index a99ef4d0e02d..303359f6614a 100644 --- a/science/pnetcdf/pkg-plist +++ b/science/pnetcdf/pkg-plist @@ -12,8 +12,8 @@ include/pnetcdf.inc include/pnetcdf.mod lib/libpnetcdf.a lib/libpnetcdf.so -lib/libpnetcdf.so.6 -lib/libpnetcdf.so.6.0.0 +lib/libpnetcdf.so.7 +lib/libpnetcdf.so.7.0.0 libdata/pkgconfig/pnetcdf.pc share/man/man1/cdfdiff.1.gz share/man/man1/ncmpidiff.1.gz diff --git a/science/psi4/Makefile b/science/psi4/Makefile index 4670af321999..dcdbd6077751 100644 --- a/science/psi4/Makefile +++ b/science/psi4/Makefile @@ -1,7 +1,7 @@ PORTNAME= psi4 DISTVERSIONPREFIX= v DISTVERSION= 1.9.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science # quantum-chemistry EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} diff --git a/science/py-HofstadterTools/Makefile b/science/py-HofstadterTools/Makefile index fd8636f491cb..44bd350e5745 100644 --- a/science/py-HofstadterTools/Makefile +++ b/science/py-HofstadterTools/Makefile @@ -1,5 +1,6 @@ PORTNAME= HofstadterTools DISTVERSION= 1.0.4 +PORTREVISION= 1 CATEGORIES= science python # physics MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-MDAnalysis/Makefile b/science/py-MDAnalysis/Makefile index c43d93a3447a..3df1c2089e7c 100644 --- a/science/py-MDAnalysis/Makefile +++ b/science/py-MDAnalysis/Makefile @@ -1,6 +1,6 @@ PORTNAME= MDAnalysis DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-MDAnalysisTests/Makefile b/science/py-MDAnalysisTests/Makefile index 87eb1f4ade49..4150fad1fa25 100644 --- a/science/py-MDAnalysisTests/Makefile +++ b/science/py-MDAnalysisTests/Makefile @@ -1,6 +1,6 @@ PORTNAME= MDAnalysisTests DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-OpenFermion-Dirac/Makefile b/science/py-OpenFermion-Dirac/Makefile index f2c3ee0a9746..290577d9a3fb 100644 --- a/science/py-OpenFermion-Dirac/Makefile +++ b/science/py-OpenFermion-Dirac/Makefile @@ -1,6 +1,6 @@ PORTNAME= OpenFermion-Dirac DISTVERSION= g20220812 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # chemistry, quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-OpenFermion-PySCF/Makefile b/science/py-OpenFermion-PySCF/Makefile index f16589ecc951..8cc4e8dab201 100644 --- a/science/py-OpenFermion-PySCF/Makefile +++ b/science/py-OpenFermion-PySCF/Makefile @@ -1,7 +1,7 @@ PORTNAME= py-OpenFermion-PySCF DISTVERSIONPREFIX= v DISTVERSION= 0.5 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # chemistry, quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-OpenFermion/Makefile b/science/py-OpenFermion/Makefile index 6505d132d2ad..7ba275fab7f0 100644 --- a/science/py-OpenFermion/Makefile +++ b/science/py-OpenFermion/Makefile @@ -1,6 +1,7 @@ PORTNAME= OpenFermion DISTVERSIONPREFIX= v DISTVERSION= 1.7.1 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-OpenMC/Makefile b/science/py-OpenMC/Makefile index 77f10b2454d9..54a52b7b7205 100644 --- a/science/py-OpenMC/Makefile +++ b/science/py-OpenMC/Makefile @@ -1,7 +1,7 @@ PORTNAME= OpenMC DISTVERSIONPREFIX= v DISTVERSION= 0.15.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-PyNE/Makefile b/science/py-PyNE/Makefile index 8fc222236634..ea9dd4c53a1e 100644 --- a/science/py-PyNE/Makefile +++ b/science/py-PyNE/Makefile @@ -1,6 +1,6 @@ PORTNAME= PyNE DISTVERSION= 0.7.8 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science # physics MASTER_SITES= https://raw.githubusercontent.com/pyne/data/master/:decay \ https://raw.githubusercontent.com/pyne/data/master/:cram \ diff --git a/science/py-abipy/Makefile b/science/py-abipy/Makefile index b4c9c5f1ce34..06e725dae361 100644 --- a/science/py-abipy/Makefile +++ b/science/py-abipy/Makefile @@ -1,6 +1,6 @@ PORTNAME= abipy DISTVERSION= 0.9.8 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-asap3/Makefile b/science/py-asap3/Makefile index bd7ad5f687d7..421b77a892db 100644 --- a/science/py-asap3/Makefile +++ b/science/py-asap3/Makefile @@ -1,6 +1,6 @@ PORTNAME= asap3 DISTVERSION= 3.12.8 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-asdf-standard/Makefile b/science/py-asdf-standard/Makefile index 9283d803ac3f..b2b41ce32e12 100644 --- a/science/py-asdf-standard/Makefile +++ b/science/py-asdf-standard/Makefile @@ -1,5 +1,5 @@ PORTNAME= asdf-standard -PORTVERSION= 1.3.0 +PORTVERSION= 1.4.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-asdf-standard/distinfo b/science/py-asdf-standard/distinfo index b0cc521e77a1..af5e997fab1e 100644 --- a/science/py-asdf-standard/distinfo +++ b/science/py-asdf-standard/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1750188132 -SHA256 (asdf_standard-1.3.0.tar.gz) = 5958961f399dead2000a78724da37f5aeeb0499a780bbd9ae4fc3ecbe3eaed64 -SIZE (asdf_standard-1.3.0.tar.gz) = 273495 +TIMESTAMP = 1757120808 +SHA256 (asdf_standard-1.4.0.tar.gz) = 0c5f121d0db87cb7780d61a087f392c5104ce208016cfb2a130c9cea912cfddc +SIZE (asdf_standard-1.4.0.tar.gz) = 275426 diff --git a/science/py-asdf/Makefile b/science/py-asdf/Makefile index 3986edee3d15..398ade237318 100644 --- a/science/py-asdf/Makefile +++ b/science/py-asdf/Makefile @@ -1,5 +1,5 @@ PORTNAME= asdf -PORTVERSION= 4.3.0 +PORTVERSION= 4.4.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-asdf/distinfo b/science/py-asdf/distinfo index f3a2707208d2..f4e9bc88b54d 100644 --- a/science/py-asdf/distinfo +++ b/science/py-asdf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753265788 -SHA256 (asdf-4.3.0.tar.gz) = 961d75fb1f1c4868b4533f885655b7ea9a3f0d257c65b49d728da53fe6df087d -SIZE (asdf-4.3.0.tar.gz) = 897816 +TIMESTAMP = 1757120806 +SHA256 (asdf-4.4.0.tar.gz) = f7146119e3d217f0b83d125e2fd657c1b2427caf6faeaf7ceedcd81db464363e +SIZE (asdf-4.4.0.tar.gz) = 899576 diff --git a/science/py-ase/Makefile b/science/py-ase/Makefile index 5ac43a3541ee..f3e0a8056fdc 100644 --- a/science/py-ase/Makefile +++ b/science/py-ase/Makefile @@ -1,21 +1,21 @@ PORTNAME= ase -DISTVERSION= 3.23.0 -PORTREVISION= 1 +DISTVERSION= 3.26.0 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org COMMENT= Atomic simulation environment -WWW= https://wiki.fysik.dtu.dk/ase/ +WWW= https://ase-lib.org/ \ + https://gitlab.com/ase/ase LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.LESSER RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.1.0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} \ - nwchem:science/nwchem + ${PYTHON_PKGNAMEPREFIX}scipy>=1.1.0:science/py-scipy@${PY_FLAVOR} +# nwchem:science/nwchem TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-xdist>=1.30.0:devel/py-pytest-xdist@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}asap3>0:science/py-asap3@${PY_FLAVOR} \ @@ -29,4 +29,6 @@ USE_PYTHON= distutils concurrent autoplist pytest NO_ARCH= yes +# tests as of 3.26.0: 25 failed, 3036 passed, 538 skipped, 5 xfailed, 49 warnings, 10 errors in 2377.98s (0:39:37), see https://gitlab.com/ase/ase/-/issues/1746, https://gitlab.com/ase/ase/-/issues/1747 + .include <bsd.port.mk> diff --git a/science/py-ase/distinfo b/science/py-ase/distinfo index 856920eb9664..eb2ad2c0fbb6 100644 --- a/science/py-ase/distinfo +++ b/science/py-ase/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1720836089 -SHA256 (ase-3.23.0.tar.gz) = 91a2aa31d89bd90b0efdfe4a7e84264f32828b2abfc9f38e65e041ad76fec8ae -SIZE (ase-3.23.0.tar.gz) = 2336462 +TIMESTAMP = 1757118068 +SHA256 (ase-3.26.0.tar.gz) = a071a355775b0a8062d23e9266e9d811b19d9f6d9ec5215e8032f7d93dc65075 +SIZE (ase-3.26.0.tar.gz) = 2405567 diff --git a/science/py-ase/files/patch-pyproject.toml b/science/py-ase/files/patch-pyproject.toml new file mode 100644 index 000000000000..f1ffc89d09c4 --- /dev/null +++ b/science/py-ase/files/patch-pyproject.toml @@ -0,0 +1,11 @@ +--- pyproject.toml.orig 2025-09-06 00:22:04 UTC ++++ pyproject.toml +@@ -7,8 +7,6 @@ readme = 'README.rst' + description='Atomic Simulation Environment' + dynamic = ['version'] + readme = 'README.rst' +-license = 'LGPL-2.1-or-later' +-license-files = ['LICENSE'] + maintainers = [{ name = 'ASE Community', email = 'ase-users@listserv.fysik.dtu.dk' }] + classifiers = [ + 'Development Status :: 6 - Mature', diff --git a/science/py-boutdata/Makefile b/science/py-boutdata/Makefile index 472e48f39589..ae4f47733575 100644 --- a/science/py-boutdata/Makefile +++ b/science/py-boutdata/Makefile @@ -1,6 +1,6 @@ PORTNAME= boutdata DISTVERSION= 0.1.10 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-boututils/Makefile b/science/py-boututils/Makefile index c6a3ec8e7c5b..c03168492951 100644 --- a/science/py-boututils/Makefile +++ b/science/py-boututils/Makefile @@ -1,6 +1,6 @@ PORTNAME= boututils DISTVERSION= 0.1.9 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-chainer-chemistry/Makefile b/science/py-chainer-chemistry/Makefile index fe6795f67cb8..43b43174b0e8 100644 --- a/science/py-chainer-chemistry/Makefile +++ b/science/py-chainer-chemistry/Makefile @@ -1,6 +1,6 @@ PORTNAME= chainer-chemistry DISTVERSION= 0.7.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science biology # machine-learning MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-chempy/Makefile b/science/py-chempy/Makefile index 1d24deab4e11..f8038dcc66d8 100644 --- a/science/py-chempy/Makefile +++ b/science/py-chempy/Makefile @@ -1,6 +1,6 @@ PORTNAME= chempy DISTVERSION= 0.9.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-cirq-aqt/Makefile b/science/py-cirq-aqt/Makefile index 1092c6dc5212..e283bf48ecdf 100644 --- a/science/py-cirq-aqt/Makefile +++ b/science/py-cirq-aqt/Makefile @@ -1,6 +1,7 @@ PORTNAME= cirq-aqt DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-cirq-core/Makefile b/science/py-cirq-core/Makefile index e44380d38e2e..61e40b03c471 100644 --- a/science/py-cirq-core/Makefile +++ b/science/py-cirq-core/Makefile @@ -1,6 +1,7 @@ PORTNAME= cirq-core DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-cirq-ionq/Makefile b/science/py-cirq-ionq/Makefile index 44ea65f06987..ea3fc7ffc5c6 100644 --- a/science/py-cirq-ionq/Makefile +++ b/science/py-cirq-ionq/Makefile @@ -1,6 +1,7 @@ PORTNAME= cirq-ionq DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-cirq-pasqal/Makefile b/science/py-cirq-pasqal/Makefile index 2c7c3405af84..c279a6440d3f 100644 --- a/science/py-cirq-pasqal/Makefile +++ b/science/py-cirq-pasqal/Makefile @@ -1,6 +1,7 @@ PORTNAME= cirq-pasqal DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-cirq-rigetti/Makefile b/science/py-cirq-rigetti/Makefile index e63bae3bff48..9f32d20ceff5 100644 --- a/science/py-cirq-rigetti/Makefile +++ b/science/py-cirq-rigetti/Makefile @@ -1,6 +1,7 @@ PORTNAME= cirq-rigetti DISTVERSIONPREFIX= v DISTVERSION= 1.5.0 +PORTREVISION= 1 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-cloud-client/Makefile b/science/py-dwave-cloud-client/Makefile index 97095c32e14d..c9b36c967a07 100644 --- a/science/py-dwave-cloud-client/Makefile +++ b/science/py-dwave-cloud-client/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-cloud-client DISTVERSION= 0.12.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python www # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-greedy/Makefile b/science/py-dwave-greedy/Makefile index da45962c8a45..9aa61e5b3d74 100644 --- a/science/py-dwave-greedy/Makefile +++ b/science/py-dwave-greedy/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-greedy DISTVERSION= 0.3.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-hybrid/Makefile b/science/py-dwave-hybrid/Makefile index 4d0b1cbdbe67..e56c2779f488 100644 --- a/science/py-dwave-hybrid/Makefile +++ b/science/py-dwave-hybrid/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-hybrid DISTVERSION= 0.6.11 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-inspector/Makefile b/science/py-dwave-inspector/Makefile index bebfb624a90a..4fdbfa6b5b88 100644 --- a/science/py-dwave-inspector/Makefile +++ b/science/py-dwave-inspector/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-inspector DISTVERSION= 0.5.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-neal/Makefile b/science/py-dwave-neal/Makefile index 7374bd2fd4cf..1f22837bcbb3 100644 --- a/science/py-dwave-neal/Makefile +++ b/science/py-dwave-neal/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-neal DISTVERSION= 0.6.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-networkx/Makefile b/science/py-dwave-networkx/Makefile index d58f9f11857b..d86d538ab3e1 100644 --- a/science/py-dwave-networkx/Makefile +++ b/science/py-dwave-networkx/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-networkx DISTVERSION= 0.8.15 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:S/-/_/}-${DISTVERSION} diff --git a/science/py-dwave-ocean-sdk/Makefile b/science/py-dwave-ocean-sdk/Makefile index 285638c3a620..bf09ca76c0db 100644 --- a/science/py-dwave-ocean-sdk/Makefile +++ b/science/py-dwave-ocean-sdk/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-ocean-sdk DISTVERSION= 6.9.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-samplers/Makefile b/science/py-dwave-samplers/Makefile index e7ec7a9d766c..b51248d1ef3a 100644 --- a/science/py-dwave-samplers/Makefile +++ b/science/py-dwave-samplers/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-samplers DISTVERSION= 1.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-system/Makefile b/science/py-dwave-system/Makefile index 45b9e9b43d56..c9ce8f85f894 100644 --- a/science/py-dwave-system/Makefile +++ b/science/py-dwave-system/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-system DISTVERSION= 1.25.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwave-tabu/Makefile b/science/py-dwave-tabu/Makefile index c9174437cfe8..fa6651f47ae6 100644 --- a/science/py-dwave-tabu/Makefile +++ b/science/py-dwave-tabu/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwave-tabu DISTVERSION= 0.5.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # quantum-computing MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-dwavebinarycsp/Makefile b/science/py-dwavebinarycsp/Makefile index 67c4982371de..d32f01053748 100644 --- a/science/py-dwavebinarycsp/Makefile +++ b/science/py-dwavebinarycsp/Makefile @@ -1,6 +1,6 @@ PORTNAME= dwavebinarycsp DISTVERSION= 0.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-earthpy/Makefile b/science/py-earthpy/Makefile index 25b1bd5d131a..8717fb174349 100644 --- a/science/py-earthpy/Makefile +++ b/science/py-earthpy/Makefile @@ -1,6 +1,6 @@ PORTNAME= earthpy PORTVERSION= 0.9.4 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science geography python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-emmet-core/Makefile b/science/py-emmet-core/Makefile index 5a90f8182102..6ae7bcd00050 100644 --- a/science/py-emmet-core/Makefile +++ b/science/py-emmet-core/Makefile @@ -14,7 +14,7 @@ LICENSE= BSD3CLAUSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm7>0:devel/py-setuptools_scm7@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}monty>=2021.3:devel/py-monty@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pybtex>=0.24:textproc/py-pybtex@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pydantic>=1.10.2:devel/py-pydantic@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pydantic2>=1.10.2:devel/py-pydantic2@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}spglib>=2.0.1:science/py-spglib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}typing-extensions>=3.7<5.0:devel/py-typing-extensions@${PY_FLAVOR} #RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}pymatgen>=2023.5.8:science/py-pymatgen@${PY_FLAVOR} # break dependency circle: pymatgen -> mp-api -> emmet-core, see https://github.com/materialsproject/api/issues/825 diff --git a/science/py-geometric/Makefile b/science/py-geometric/Makefile index 3dc948298d35..186198e8badf 100644 --- a/science/py-geometric/Makefile +++ b/science/py-geometric/Makefile @@ -1,6 +1,6 @@ PORTNAME= geometric DISTVERSION= 1.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-gpaw/Makefile b/science/py-gpaw/Makefile index 7adec17183e7..d849a0d2021b 100644 --- a/science/py-gpaw/Makefile +++ b/science/py-gpaw/Makefile @@ -1,6 +1,6 @@ PORTNAME= gpaw DISTVERSION= 24.6.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-hiphive/Makefile b/science/py-hiphive/Makefile index def7bb28a62c..f81c2e5085a0 100644 --- a/science/py-hiphive/Makefile +++ b/science/py-hiphive/Makefile @@ -1,6 +1,6 @@ PORTNAME= hiphive DISTVERSION= 1.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-icet/Makefile b/science/py-icet/Makefile index 44a8eb096d13..b5a2b9177d5c 100644 --- a/science/py-icet/Makefile +++ b/science/py-icet/Makefile @@ -1,5 +1,6 @@ PORTNAME= icet DISTVERSION= 3.0 +PORTREVISION= 1 CATEGORIES= science # chemistry, physics #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-inequality/Makefile b/science/py-inequality/Makefile index 76fde967a827..cc8f4eea51b7 100644 --- a/science/py-inequality/Makefile +++ b/science/py-inequality/Makefile @@ -1,5 +1,6 @@ PORTNAME= inequality PORTVERSION= 1.1.1 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-kimpy/Makefile b/science/py-kimpy/Makefile index 442b5c9a82d3..0c537ae18c1e 100644 --- a/science/py-kimpy/Makefile +++ b/science/py-kimpy/Makefile @@ -1,6 +1,5 @@ PORTNAME= kimpy -DISTVERSION= 2.1.1 -PORTREVISION= 1 +DISTVERSION= 2.1.3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -19,7 +18,11 @@ RUN_DEPENDS= ${PYNUMPY} USES= compiler:c++20-lang pkgconfig python USE_PYTHON= distutils autoplist pytest # tests fail to run, see https://github.com/openkim/kimpy/issues/16 +TEST_WRKSRC= ${WRKSRC}/tests + post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/kimpy/*${PYTHON_TAG}.so +# tests as of 2.1.3: 21 passed in 2.91s + .include <bsd.port.mk> diff --git a/science/py-kimpy/distinfo b/science/py-kimpy/distinfo index e7d3c6deaef7..6d692faf3795 100644 --- a/science/py-kimpy/distinfo +++ b/science/py-kimpy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1726458544 -SHA256 (kimpy-2.1.1.tar.gz) = 3ab9ab64179cdf8b7d41704330d12bbb78461792664354e9e9144098709bc636 -SIZE (kimpy-2.1.1.tar.gz) = 50141 +TIMESTAMP = 1757123909 +SHA256 (kimpy-2.1.3.tar.gz) = 2a4a4455dfc5aeb5b8379a96b7c1e7a3f34bfe6bd3c077e23a3e27b8829c2aed +SIZE (kimpy-2.1.3.tar.gz) = 49856 diff --git a/science/py-kliff/Makefile b/science/py-kliff/Makefile index c5a5995637ee..b346f87c3fbe 100644 --- a/science/py-kliff/Makefile +++ b/science/py-kliff/Makefile @@ -1,5 +1,6 @@ PORTNAME= kliff DISTVERSION= 0.4.4 +PORTREVISION= 1 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-kpLib/Makefile b/science/py-kpLib/Makefile index bc5206c29439..5cb720714515 100644 --- a/science/py-kpLib/Makefile +++ b/science/py-kpLib/Makefile @@ -1,6 +1,6 @@ PORTNAME= kpLib DISTVERSION= 1.1.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-lifelines/Makefile b/science/py-lifelines/Makefile index 57a070d0c9be..7e2307e559b6 100644 --- a/science/py-lifelines/Makefile +++ b/science/py-lifelines/Makefile @@ -1,6 +1,6 @@ PORTNAME= lifelines DISTVERSION= 0.19.5 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-mp-api/Makefile b/science/py-mp-api/Makefile index fb894efd1196..681bea4d9bc1 100644 --- a/science/py-mp-api/Makefile +++ b/science/py-mp-api/Makefile @@ -1,5 +1,6 @@ PORTNAME= mp-api DISTVERSION= 0.34.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-mpcontribs-client/Makefile b/science/py-mpcontribs-client/Makefile index 98a049cfe2b2..50a04843eab8 100644 --- a/science/py-mpcontribs-client/Makefile +++ b/science/py-mpcontribs-client/Makefile @@ -1,6 +1,6 @@ PORTNAME= mpcontribs-client DISTVERSION= 5.10.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-mplhep/Makefile b/science/py-mplhep/Makefile index 27fc7bf6b658..d1b5c9b1af24 100644 --- a/science/py-mplhep/Makefile +++ b/science/py-mplhep/Makefile @@ -1,5 +1,6 @@ PORTNAME= mplhep DISTVERSION= 0.3.59 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile index b0a3b8b4c973..49e98776b6f4 100644 --- a/science/py-obspy/Makefile +++ b/science/py-obspy/Makefile @@ -1,6 +1,6 @@ PORTNAME= obspy PORTVERSION= 1.4.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-openpiv/Makefile b/science/py-openpiv/Makefile index 66e447b465d5..4243feff9291 100644 --- a/science/py-openpiv/Makefile +++ b/science/py-openpiv/Makefile @@ -1,6 +1,6 @@ PORTNAME= openpiv PORTVERSION= 0.23.8 -PORTREVISION= 3 +PORTREVISION= 4 DISTVERSIONPREFIX= v CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-optking/Makefile b/science/py-optking/Makefile index d1ab10707dfa..8c71b977a3be 100644 --- a/science/py-optking/Makefile +++ b/science/py-optking/Makefile @@ -1,6 +1,6 @@ PORTNAME= optking DISTVERSION= 0.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # chemistry PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-penaltymodel/Makefile b/science/py-penaltymodel/Makefile index 09203698bbcf..08b126f5fb7d 100644 --- a/science/py-penaltymodel/Makefile +++ b/science/py-penaltymodel/Makefile @@ -1,6 +1,6 @@ PORTNAME= penaltymodel DISTVERSION= 1.1.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-phono3py/Makefile b/science/py-phono3py/Makefile index 44d7932674ed..31ebec85b93d 100644 --- a/science/py-phono3py/Makefile +++ b/science/py-phono3py/Makefile @@ -1,6 +1,6 @@ PORTNAME= phono3py DISTVERSION= 3.9.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile index b298e416ecf5..3ec6ed90d710 100644 --- a/science/py-phonopy/Makefile +++ b/science/py-phonopy/Makefile @@ -1,5 +1,6 @@ PORTNAME= phonopy DISTVERSION= 2.42.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pnetcdf/Makefile b/science/py-pnetcdf/Makefile index 3bede6cc5d26..6162f6f155ef 100644 --- a/science/py-pnetcdf/Makefile +++ b/science/py-pnetcdf/Makefile @@ -1,5 +1,6 @@ PORTNAME= pnetcdf PORTVERSION= 1.0.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pygmo2/Makefile b/science/py-pygmo2/Makefile index a7ed3634ffd4..869cc90d53f7 100644 --- a/science/py-pygmo2/Makefile +++ b/science/py-pygmo2/Makefile @@ -1,7 +1,7 @@ PORTNAME= pygmo2 DISTVERSIONPREFIX= v DISTVERSION= 2.19.7 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= science graphics PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pymatgen-analysis-alloys/Makefile b/science/py-pymatgen-analysis-alloys/Makefile index 88142b17b01f..3252f214eceb 100644 --- a/science/py-pymatgen-analysis-alloys/Makefile +++ b/science/py-pymatgen-analysis-alloys/Makefile @@ -1,5 +1,6 @@ PORTNAME= pymatgen-analysis-alloys DISTVERSION= 0.0.7 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pymatgen/Makefile b/science/py-pymatgen/Makefile index dc428fc53ede..666ba10e005f 100644 --- a/science/py-pymatgen/Makefile +++ b/science/py-pymatgen/Makefile @@ -1,6 +1,7 @@ PORTNAME= pymatgen DISTVERSIONPREFIX= v DISTVERSION= 2025.6.14 +PORTREVISION= 1 CATEGORIES= science python #MASTER_SITES= PYPI # no tests PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pyqubo/Makefile b/science/py-pyqubo/Makefile index 86582cb6a231..f7b37bace0fa 100644 --- a/science/py-pyqubo/Makefile +++ b/science/py-pyqubo/Makefile @@ -1,6 +1,6 @@ PORTNAME= pyqubo DISTVERSION= 1.4.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # quantum-computing PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-pyteomics/Makefile b/science/py-pyteomics/Makefile index 6ef21f18727d..0de34c07af0e 100644 --- a/science/py-pyteomics/Makefile +++ b/science/py-pyteomics/Makefile @@ -1,6 +1,6 @@ PORTNAME= pyteomics PORTVERSION= 4.7.5 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-qcelemental/Makefile b/science/py-qcelemental/Makefile index 5547c73f62a2..b1a5efde166b 100644 --- a/science/py-qcelemental/Makefile +++ b/science/py-qcelemental/Makefile @@ -1,5 +1,6 @@ PORTNAME= qcelemental DISTVERSION= 0.28.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-qcengine/Makefile b/science/py-qcengine/Makefile index a868cf47203a..92e077639ffb 100644 --- a/science/py-qcengine/Makefile +++ b/science/py-qcengine/Makefile @@ -1,6 +1,6 @@ PORTNAME= qcengine DISTVERSION= 0.30.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python # chemistry MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-qiskit/Makefile b/science/py-qiskit/Makefile index c55d7b2e49e3..98898e931d59 100644 --- a/science/py-qiskit/Makefile +++ b/science/py-qiskit/Makefile @@ -1,5 +1,6 @@ PORTNAME= qiskit DISTVERSION= 2.1.1 +PORTREVISION= 1 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-sarpy/Makefile b/science/py-sarpy/Makefile index 2319a7ca3340..f5421f78c28e 100644 --- a/science/py-sarpy/Makefile +++ b/science/py-sarpy/Makefile @@ -1,5 +1,5 @@ PORTNAME= sarpy -PORTVERSION= 1.3.60 +PORTVERSION= 1.3.61 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -13,8 +13,13 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.19.0,1:math/py-numpy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=0:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}lxml5>=4.1.1:devel/py-lxml5@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=1.19.0,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pillow>=0:graphics/py-pillow@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}shapely>=1.6.4:devel/py-shapely@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent pep517 @@ -24,13 +29,8 @@ NO_ARCH= yes OPTIONS_DEFINE= ALL ALL_DESC= All optional dependencies -ALL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=0:science/py-h5py@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}lxml5>=4.1.1:devel/py-lxml5@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}networkx>=2.5:math/py-networkx@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pillow>=0:graphics/py-pillow@${PY_FLAVOR} \ +ALL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}networkx>=2.5:math/py-networkx@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest>=3.3.2,1:devel/py-pytest@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}shapely>=1.6.4:devel/py-shapely@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}smart-open>=0:net/py-smart-open@${PY_FLAVOR} .include <bsd.port.mk> diff --git a/science/py-sarpy/distinfo b/science/py-sarpy/distinfo index ff475cd5792a..bf135760549a 100644 --- a/science/py-sarpy/distinfo +++ b/science/py-sarpy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1738089136 -SHA256 (sarpy-1.3.60.tar.gz) = cf9ef0359419b1e69dfc3ea9eed5507ad6bd1479da386d1b513d8e5d904dfcda -SIZE (sarpy-1.3.60.tar.gz) = 1282348 +TIMESTAMP = 1757120810 +SHA256 (sarpy-1.3.61.tar.gz) = 85c94a91990b7aacf8cf552d61c0065f827e28b33a42160daafb3668f73b647a +SIZE (sarpy-1.3.61.tar.gz) = 1283179 diff --git a/science/py-scikit-fuzzy/Makefile b/science/py-scikit-fuzzy/Makefile index e6fcb0ff80c4..658380d01336 100644 --- a/science/py-scikit-fuzzy/Makefile +++ b/science/py-scikit-fuzzy/Makefile @@ -1,5 +1,6 @@ PORTNAME= scikit-fuzzy DISTVERSION= 0.5.0 +PORTREVISION= 1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-sdf/Makefile b/science/py-sdf/Makefile index a4827b68afe5..8e4670177f9d 100644 --- a/science/py-sdf/Makefile +++ b/science/py-sdf/Makefile @@ -1,6 +1,6 @@ PORTNAME= sdf PORTVERSION= 0.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science cad python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-segregation/Makefile b/science/py-segregation/Makefile index f145f800c94a..88bd0223be01 100644 --- a/science/py-segregation/Makefile +++ b/science/py-segregation/Makefile @@ -1,6 +1,6 @@ PORTNAME= segregation PORTVERSION= 2.5 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-xbout/Makefile b/science/py-xbout/Makefile index d1424ca01695..1afc7238febc 100644 --- a/science/py-xbout/Makefile +++ b/science/py-xbout/Makefile @@ -1,6 +1,6 @@ PORTNAME= xbout DISTVERSION= 0.3.5 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science education MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/qt6-quick3dphysics/distinfo b/science/qt6-quick3dphysics/distinfo index 03a1722c995d..8e99d6679edf 100644 --- a/science/qt6-quick3dphysics/distinfo +++ b/science/qt6-quick3dphysics/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749162772 -SHA256 (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 66e8365eb8c409a8426dec13a83203879f31845d555bf7632ce0728e8ddca24f -SIZE (KDE/Qt/6.9.1/qtquick3dphysics-everywhere-src-6.9.1.tar.xz) = 4683360 +TIMESTAMP = 1756197855 +SHA256 (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 87fc6485638f52cd33dc1a755a11c78fd992e438fe77ef53e0ca57c63505cc8b +SIZE (KDE/Qt/6.9.2/qtquick3dphysics-everywhere-src-6.9.2.tar.xz) = 4668516 diff --git a/science/rdkit/Makefile b/science/rdkit/Makefile index d4caaecd8c66..dd2255f3a900 100644 --- a/science/rdkit/Makefile +++ b/science/rdkit/Makefile @@ -1,7 +1,7 @@ PORTNAME= rdkit DISTVERSIONPREFIX= Release_ DISTVERSION= 2025_03_1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= LOCAL/yuri/:font # unstable, changing font file: https://fonts.google.com/download?family=Comic%20Neue&dummy=/:font DISTFILES= ComicNeue-Regular.ttf:font diff --git a/science/smoldyn/Makefile b/science/smoldyn/Makefile index 965707c3adac..55178cea9aca 100644 --- a/science/smoldyn/Makefile +++ b/science/smoldyn/Makefile @@ -1,5 +1,5 @@ PORTNAME= smoldyn -DISTVERSION= 2.74 +DISTVERSION= 2.75 CATEGORIES= science MASTER_SITES= https://www.smoldyn.org/ @@ -32,8 +32,8 @@ PYTHON_CMAKE_BOOL= OPTION_PYTHON PYTHON_USES= python PYTHON_CMAKE_ON= -DPython3_EXECUTABLE=${PYTHON_CMD} PYTHON_BUILD_DEPENDS= ${PY_SETUPTOOLS} -PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} -PYTHON_BROKEN= pending biology/py-biosimulators-utils completion +#PYTHON_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}biosimulators-utils>0:biology/py-biosimulators-utils@${PY_FLAVOR} +PYTHON_BROKEN= some python dependencies aren't ported post-extract: # see https://github.com/ssandrews/Smoldyn/issues/127 @${CHMOD} +x ${WRKSRC}/scripts/run_pyscript.py.in diff --git a/science/smoldyn/distinfo b/science/smoldyn/distinfo index 61749de73a7f..5083a957430a 100644 --- a/science/smoldyn/distinfo +++ b/science/smoldyn/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1737604798 -SHA256 (smoldyn-2.74.tgz) = 1abae836ac515092be14e2058af58a25981d7872c3a002fbff67bde0f64fa28a -SIZE (smoldyn-2.74.tgz) = 34348669 +TIMESTAMP = 1755906394 +SHA256 (smoldyn-2.75.tgz) = f7116e207d6ba91d3f709b6839d8054a622383ac6e0c5f81108015d083a2a094 +SIZE (smoldyn-2.75.tgz) = 34008076 diff --git a/science/sz3/Makefile b/science/sz3/Makefile index e65b8ad06873..fe01a0279dc0 100644 --- a/science/sz3/Makefile +++ b/science/sz3/Makefile @@ -1,5 +1,5 @@ PORTNAME= sz3 -PORTVERSION= 3.2.1 +PORTVERSION= 3.3.0 DISTVERSIONPREFIX= v CATEGORIES= science @@ -13,15 +13,18 @@ LICENSE_FILE= ${WRKSRC}/copyright-and-BSD-license.txt LIB_DEPENDS= libgsl.so:math/gsl \ libzstd.so:archivers/zstd +TEST_DEPENDS= googletest>=0:devel/googletest -USES= cmake pkgconfig +USES= cmake:testing pkgconfig CMAKE_OFF= BUILD_H5Z_FILTER \ BUILD_MDZ \ + BUILD_TESTING \ SZ3_DEBUG_TIMINGS \ SZ3_USE_BUNDLED_ZSTD CMAKE_ON= BUILD_SHARED_LIBS \ - BUILD_STATIC_LIBS + BUILD_STATIC_LIBS \ + SZ3_USE_SKA_HASH DATADIR= ${PREFIX}/share/SZ3 diff --git a/science/sz3/distinfo b/science/sz3/distinfo index 638b3b67e6a1..29921144bbbb 100644 --- a/science/sz3/distinfo +++ b/science/sz3/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1738088812 -SHA256 (szcompressor-SZ3-v3.2.1_GH0.tar.gz) = 24ed1c8159832734a241df66b857eca64d18a2e8e949ef583a2d0bfe01c6b7e1 -SIZE (szcompressor-SZ3-v3.2.1_GH0.tar.gz) = 4474033 +TIMESTAMP = 1757120532 +SHA256 (szcompressor-SZ3-v3.3.0_GH0.tar.gz) = c6b9e114e5849911e14334fca14eaf30f9a84d4bbe681a1f32d3be62ec68fb52 +SIZE (szcompressor-SZ3-v3.3.0_GH0.tar.gz) = 128524 diff --git a/science/sz3/pkg-plist b/science/sz3/pkg-plist index cbe94507605e..44a0f55e5e88 100644 --- a/science/sz3/pkg-plist +++ b/science/sz3/pkg-plist @@ -1,4 +1,5 @@ bin/sz3 +bin/sz3_customized_demo bin/sz3_smoke_test include/SZ3/api/impl/SZAlgoInterp.hpp include/SZ3/api/impl/SZAlgoLorenzoReg.hpp @@ -9,13 +10,11 @@ include/SZ3/api/impl/SZImplOMP.hpp include/SZ3/api/sz.hpp include/SZ3/compressor/Compressor.hpp include/SZ3/compressor/SZGenericCompressor.hpp -include/SZ3/compressor/SZIterateCompressor.hpp -include/SZ3/compressor/specialized/SZBlockInterpolationCompressor.hpp include/SZ3/compressor/specialized/SZExaaltCompressor.hpp include/SZ3/compressor/specialized/SZTruncateCompressor.hpp +include/SZ3/decomposition/BlockwiseDecomposition.hpp include/SZ3/decomposition/Decomposition.hpp include/SZ3/decomposition/InterpolationDecomposition.hpp -include/SZ3/decomposition/LorenzoRegressionDecomposition.hpp include/SZ3/decomposition/NoPredictionDecomposition.hpp include/SZ3/decomposition/TimeSeriesDecomposition.hpp include/SZ3/def.hpp @@ -29,11 +28,6 @@ include/SZ3/lossless/Lossless_bypass.hpp include/SZ3/lossless/Lossless_zstd.hpp include/SZ3/predictor/ComposedPredictor.hpp include/SZ3/predictor/LorenzoPredictor.hpp -include/SZ3/predictor/MetaLorenzoPredictor.hpp -include/SZ3/predictor/MetaRegressionPredictor.hpp -include/SZ3/predictor/PolyRegressionCoeffAux.hpp -include/SZ3/predictor/PolyRegressionCoeffAux.m -include/SZ3/predictor/PolyRegressionPredictor.hpp include/SZ3/predictor/Predictor.hpp include/SZ3/predictor/RegressionPredictor.hpp include/SZ3/preprocessor/PreFilter.hpp @@ -42,6 +36,7 @@ include/SZ3/preprocessor/Transpose.hpp include/SZ3/preprocessor/Wavelet.hpp include/SZ3/quantizer/LinearQuantizer.hpp include/SZ3/quantizer/Quantizer.hpp +include/SZ3/utils/BlockwiseIterator.hpp include/SZ3/utils/ByteUtil.hpp include/SZ3/utils/Config.hpp include/SZ3/utils/Extraction.hpp @@ -50,12 +45,10 @@ include/SZ3/utils/Interpolators.hpp include/SZ3/utils/Iterator.hpp include/SZ3/utils/KmeansUtil.hpp include/SZ3/utils/MemoryUtil.hpp -include/SZ3/utils/MetaDef.hpp include/SZ3/utils/QuantOptimizatioin.hpp +include/SZ3/utils/Sample.hpp include/SZ3/utils/Statistic.hpp include/SZ3/utils/Timer.hpp -include/SZ3/utils/inih/INIReader.h -include/SZ3/utils/inih/LICENSE.txt include/SZ3/utils/ska_hash/LICENSE.txt include/SZ3/utils/ska_hash/bytell_hash_map.hpp include/SZ3/utils/ska_hash/flat_hash_map.hpp diff --git a/science/tinker/Makefile b/science/tinker/Makefile index a62f2268609b..2406c4c31a27 100644 --- a/science/tinker/Makefile +++ b/science/tinker/Makefile @@ -1,5 +1,6 @@ PORTNAME= tinker DISTVERSION= 25.3 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://dasher.wustl.edu/tinker/downloads/ diff --git a/science/tinker/distinfo b/science/tinker/distinfo index 7ca60014bed4..6ebb852d7522 100644 --- a/science/tinker/distinfo +++ b/science/tinker/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753634645 -SHA256 (tinker-25.3.tar.gz) = d536f1d4d0d7d4394b3b3d88a52cf12ed3489312ac2ad9c6ce4d198bd681e36c -SIZE (tinker-25.3.tar.gz) = 80772142 +TIMESTAMP = 1755934058 +SHA256 (tinker-25.3.tar.gz) = 84744d00e2936be23be6ed6acbbc251f07e016db53ead079a270280539a42145 +SIZE (tinker-25.3.tar.gz) = 80772560 diff --git a/science/ttk/Makefile b/science/ttk/Makefile index 825079819c86..1b1d123f5933 100644 --- a/science/ttk/Makefile +++ b/science/ttk/Makefile @@ -1,5 +1,6 @@ PORTNAME= ttk DISTVERSION= 1.3.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile index 68f706f4fb08..5108a9903564 100644 --- a/science/v_sim/Makefile +++ b/science/v_sim/Makefile @@ -1,6 +1,6 @@ PORTNAME= v_sim DISTVERSION= 3.8.0 -PORTREVISION= 13 +PORTREVISION= 14 CATEGORIES= science MAINTAINER= thierry@FreeBSD.org diff --git a/science/votca/Makefile b/science/votca/Makefile index f12745e528a9..03ee6bcbd1a4 100644 --- a/science/votca/Makefile +++ b/science/votca/Makefile @@ -1,7 +1,7 @@ PORTNAME= votca DISTVERSIONPREFIX= v DISTVERSION= 2025 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/wwplot/Makefile b/science/wwplot/Makefile index bfab3e211939..ab33bcd5f63e 100644 --- a/science/wwplot/Makefile +++ b/science/wwplot/Makefile @@ -1,6 +1,7 @@ PORTNAME= wwplot DISTVERSIONPREFIX= v DISTVERSION= 1.0.0 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org |