3 files changed, 32 insertions, 23 deletions
diff --git a/science/py-pymol/files/patch-layer0_MemoryUsage.cpp b/science/py-pymol/files/patch-layer0_MemoryUsage.cpp
new file mode 100644
index 000000000000..682a34626126
--- /dev/null
+++ b/science/py-pymol/files/patch-layer0_MemoryUsage.cpp
@@ -0,0 +1,20 @@
+--- layer0/MemoryUsage.cpp.orig	2022-11-27 20:14:03 UTC
++++ layer0/MemoryUsage.cpp
+@@ -51,6 +51,8 @@ size_t memory_usage()
+     GetProcessMemoryInfo(hProcess.get(), &pmc, sizeof(pmc));
+   }
+   return pmc.WorkingSetSize;
++#elif defined(__FreeBSD__)
++  return 0; // TODO implement memory_usage()
+ #else
+ #error "platform not handled"
+ #endif
+@@ -92,6 +94,8 @@ size_t memory_available()
+   statex.dwLength = sizeof(statex);
+   GlobalMemoryStatusEx(&statex);
+   return statex.ullAvailPhys;
++#elif defined(__FreeBSD__)
++  return 0; // TODO: implement memory_available()
+ #else
+ #error "platform not handled"
+ #endif
diff --git a/science/py-pymol/files/patch-modules_pymol_Qt_____init____.py b/science/py-pymol/files/patch-modules_pymol_Qt_____init____.py
deleted file mode 100644
index 2075f7ce00ae..000000000000
--- a/science/py-pymol/files/patch-modules_pymol_Qt_____init____.py
+++ /dev/null
@@ -1,20 +0,0 @@
---- modules/pymol/Qt/__init__.py.orig	2019-02-11 14:08:10 UTC
-+++ modules/pymol/Qt/__init__.py
-@@ -29,7 +29,7 @@ if not PYQT_NAME:
-         if DEBUG:
-             print('import PyQt5 failed')
- 
--if not PYQT_NAME:
-+if False:
-     try:
-         from PySide2 import QtGui, QtCore, QtOpenGL, QtWidgets
-         PYQT_NAME = 'PySide2'
-@@ -46,7 +46,7 @@ if not PYQT_NAME:
-         if DEBUG:
-             print('import PyQt4 failed')
- 
--if not PYQT_NAME:
-+if False:
-     try:
-         from PySide import QtGui, QtCore, QtOpenGL
-         PYQT_NAME = 'PySide'
diff --git a/science/py-pymol/files/patch-setup.py b/science/py-pymol/files/patch-setup.py
index 062ebccceca4..fe1059c10949 100644
--- a/science/py-pymol/files/patch-setup.py
+++ b/science/py-pymol/files/patch-setup.py
@@ -1,6 +1,6 @@
---- setup.py.orig	2019-02-12 06:00:47 UTC
+--- setup.py.orig	2021-05-10 18:38:37 UTC
 +++ setup.py
-@@ -52,6 +52,8 @@ try:
+@@ -53,6 +53,8 @@ try:
              "shared library; no: disable fast MMTF load support")
      parser.add_argument('--help-distutils', action="store_true",
              help="show help for distutils options and exit")
@@ -8,4 +8,13 @@
 +            help="single-version-externally-managed")
      parser.add_argument('--testing', action="store_true",
              help="Build C-level tests")
-     options, sys.argv[1:] = parser.parse_known_args(namespace=options)
+     parser.add_argument('--openvr', dest='openvr', action='store_true')
+@@ -282,7 +284,7 @@ if DEBUG and not WIN:
+ libs = ["png", "freetype"]
+ lib_dirs = []
+ ext_comp_args = [
+-    "-Werror=return-type",
++    #"-Werror=return-type",
+     "-Wunused-variable",
+     "-Wno-switch",
+     "-Wno-narrowing",