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-rw-r--r--science/py-gemmi/files/patch-CMakeLists.txt26
1 files changed, 12 insertions, 14 deletions
diff --git a/science/py-gemmi/files/patch-CMakeLists.txt b/science/py-gemmi/files/patch-CMakeLists.txt
index d75096e3228b..62637e7014cd 100644
--- a/science/py-gemmi/files/patch-CMakeLists.txt
+++ b/science/py-gemmi/files/patch-CMakeLists.txt
@@ -1,4 +1,4 @@
---- CMakeLists.txt.orig 2025-03-24 16:35:30 UTC
+--- CMakeLists.txt.orig 2025-07-05 13:51:16 UTC
+++ CMakeLists.txt
@@ -6,7 +6,7 @@ string(REGEX REPLACE ".+\"([0-9]+\.[0-9]+\.[0-9]+)(-de
string(REGEX REPLACE ".+\"([0-9]+\.[0-9]+\.[0-9]+)(-dev)?\"" "\\1"
@@ -27,7 +27,7 @@
-target_include_directories(gemmi_headers INTERFACE
- "$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>"
- "$<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>")
--target_compile_features(gemmi_headers INTERFACE cxx_std_17)
+-target_compile_features(gemmi_headers INTERFACE cxx_std_14)
-set_target_properties(gemmi_headers PROPERTIES EXPORT_NAME headers)
-
-add_library(gemmi_cpp
@@ -37,7 +37,7 @@
- src/monlib.cpp src/mtz.cpp src/mtz2cif.cpp
- src/pdb.cpp src/polyheur.cpp src/read_cif.cpp
- src/resinfo.cpp src/riding_h.cpp
-- src/select.cpp src/sprintf.cpp src/symmetry.cpp
+- src/select.cpp src/sprintf.cpp src/dssp.cpp src/symmetry.cpp
- src/to_json.cpp src/to_mmcif.cpp src/to_pdb.cpp src/topo.cpp
- src/xds_ascii.cpp)
-add_library(gemmi::gemmi_cpp ALIAS gemmi_cpp)
@@ -98,8 +98,8 @@
target_include_directories(gemmi-${target} PRIVATE
"${CMAKE_CURRENT_SOURCE_DIR}/third_party")
endfunction()
-@@ -336,7 +274,7 @@ add_executable(gemmi::prog ALIAS gemmi_prog)
- prog/xds2mtz.cpp
+@@ -337,7 +275,7 @@ add_executable(gemmi::prog ALIAS gemmi_prog)
+ prog/wcn.cpp prog/xds2mtz.cpp
$<TARGET_OBJECTS:options>)
add_executable(gemmi::prog ALIAS gemmi_prog)
-target_link_libraries(gemmi_prog PRIVATE gemmi_cpp)
@@ -107,7 +107,7 @@
target_include_directories(gemmi_prog PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/third_party")
target_compile_definitions(gemmi_prog PRIVATE GEMMI_ALL_IN_ONE=1)
set_target_properties(gemmi_prog PROPERTIES OUTPUT_NAME gemmi EXPORT_NAME prog)
-@@ -376,7 +314,7 @@ target_compile_definitions(cpptest PRIVATE USE_STD_SNP
+@@ -377,17 +315,17 @@ target_compile_definitions(cpptest PRIVATE USE_STD_SNP
add_executable(cpptest EXCLUDE_FROM_ALL tests/main.cpp tests/cif.cpp tests/windowsh.cpp)
target_compile_definitions(cpptest PRIVATE USE_STD_SNPRINTF=1)
@@ -115,11 +115,9 @@
+target_link_libraries(cpptest PRIVATE gemmi)
target_include_directories(cpptest PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/third_party")
- add_executable(hello EXCLUDE_FROM_ALL examples/hello.cpp)
-@@ -384,11 +322,11 @@ add_executable(doc_example EXCLUDE_FROM_ALL
add_executable(doc_example EXCLUDE_FROM_ALL
docs/code/sym.cpp docs/code/elem.cpp docs/code/resinfo.cpp
- docs/code/cell.cpp docs/code/mutate.cpp src/resinfo.cpp)
+ docs/code/cell.cpp docs/code/mutate.cpp)
-target_link_libraries(doc_example PRIVATE gemmi_cpp)
+target_link_libraries(doc_example PRIVATE gemmi)
add_executable(doc_example2 EXCLUDE_FROM_ALL docs/code/cif_cc.cpp)
@@ -130,7 +128,7 @@
# always compile these tests with assertions enabled
if (CMAKE_CXX_COMPILER_ID MATCHES "Clang|GNU|Intel")
-@@ -396,14 +334,14 @@ add_executable(test_disulf EXCLUDE_FROM_ALL tests/disu
+@@ -395,14 +333,14 @@ add_executable(test_disulf EXCLUDE_FROM_ALL tests/disu
endif()
add_executable(test_disulf EXCLUDE_FROM_ALL tests/disulf.cpp)
@@ -148,16 +146,16 @@
enable_testing()
-@@ -440,7 +378,7 @@ if (benchmark_FOUND)
+@@ -439,7 +377,7 @@ if (benchmark_FOUND)
foreach(b stoi elem mod niggli pdb resinfo round sym writecif)
add_executable(${b}-bm EXCLUDE_FROM_ALL benchmarks/${b}.cpp)
- if (b MATCHES "elem|resinfo|pdb|writecif")
+ if (b MATCHES "elem|resinfo|pdb|sym|writecif")
- target_link_libraries(${b}-bm PRIVATE gemmi_cpp)
+ target_link_libraries(${b}-bm PRIVATE gemmi)
endif()
target_link_libraries(${b}-bm PRIVATE gemmi_headers benchmark::benchmark)
set_property(TARGET ${b}-bm PROPERTY RUNTIME_OUTPUT_DIRECTORY
-@@ -481,11 +419,11 @@ if (USE_PYTHON)
+@@ -480,11 +418,11 @@ if (USE_PYTHON)
python/unitcell.cpp python/write.cpp)
if (STANDALONE_PYTHON_MODULE)
@@ -172,7 +170,7 @@
endif()
set_property(TARGET gemmi_py PROPERTY OUTPUT_NAME gemmi_ext)
if (CMAKE_CONFIGURATION_TYPES)
-@@ -568,19 +506,19 @@ endif()
+@@ -567,19 +505,19 @@ endif()
install(TARGETS gemmi_prog EXPORT GemmiTargets)
endif()