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-rw-r--r--math/armadillo/Makefile2
-rw-r--r--math/armadillo/distinfo6
-rw-r--r--math/armadillo/pkg-plist6
-rw-r--r--math/geogebra/Makefile2
-rw-r--r--math/geogebra/distinfo6
-rw-r--r--math/gismo/Makefile4
-rw-r--r--math/gismo/distinfo6
-rw-r--r--math/gismo/files/patch-cmake_gsConfig.cmake14
-rw-r--r--math/gismo/pkg-plist124
-rw-r--r--math/py-awkward-cpp/Makefile2
-rw-r--r--math/py-awkward-cpp/distinfo6
-rw-r--r--math/py-awkward-cpp/files/patch-pyproject.toml12
-rw-r--r--math/py-awkward/Makefile4
-rw-r--r--math/py-awkward/distinfo6
-rw-r--r--math/py-awkward/files/patch-pyproject.toml12
-rw-r--r--math/py-modin/Makefile2
-rw-r--r--math/py-modin/distinfo6
-rw-r--r--math/py-narwhals/Makefile2
-rw-r--r--math/py-narwhals/distinfo6
-rw-r--r--math/scilab/Makefile7
-rw-r--r--math/scilab/files/patch-libxml2.1341
21 files changed, 207 insertions, 69 deletions
diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile
index e36bfe8dc124..38d611477039 100644
--- a/math/armadillo/Makefile
+++ b/math/armadillo/Makefile
@@ -1,5 +1,5 @@
PORTNAME= armadillo
-PORTVERSION= 14.4.3
+PORTVERSION= 14.6.0
CATEGORIES= math
MASTER_SITES= SF/arma
diff --git a/math/armadillo/distinfo b/math/armadillo/distinfo
index 6499d0b18497..f2d240074241 100644
--- a/math/armadillo/distinfo
+++ b/math/armadillo/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748495697
-SHA256 (armadillo-14.4.3.tar.xz) = c3aadd59bdb0ea4339b056f29972f92ee19fdc52f68eb78d32d2e4caf4d80c3a
-SIZE (armadillo-14.4.3.tar.xz) = 6815564
+TIMESTAMP = 1752266016
+SHA256 (armadillo-14.6.0.tar.xz) = d18ccdb78a5da88f18fc529d8a8d40fad455842be6b01c59796f47a6f5bc7fe5
+SIZE (armadillo-14.6.0.tar.xz) = 7159176
diff --git a/math/armadillo/pkg-plist b/math/armadillo/pkg-plist
index 4711b6ff61b0..e2d15e4f8844 100644
--- a/math/armadillo/pkg-plist
+++ b/math/armadillo/pkg-plist
@@ -120,6 +120,7 @@ include/armadillo_bits/fn_all.hpp
include/armadillo_bits/fn_any.hpp
include/armadillo_bits/fn_approx_equal.hpp
include/armadillo_bits/fn_as_scalar.hpp
+include/armadillo_bits/fn_balance.hpp
include/armadillo_bits/fn_chi2rnd.hpp
include/armadillo_bits/fn_chol.hpp
include/armadillo_bits/fn_clamp.hpp
@@ -183,6 +184,7 @@ include/armadillo_bits/fn_normalise.hpp
include/armadillo_bits/fn_normcdf.hpp
include/armadillo_bits/fn_normpdf.hpp
include/armadillo_bits/fn_numel.hpp
+include/armadillo_bits/fn_omit.hpp
include/armadillo_bits/fn_ones.hpp
include/armadillo_bits/fn_orth_null.hpp
include/armadillo_bits/fn_pinv.hpp
@@ -432,6 +434,8 @@ include/armadillo_bits/op_norm_bones.hpp
include/armadillo_bits/op_norm_meat.hpp
include/armadillo_bits/op_normalise_bones.hpp
include/armadillo_bits/op_normalise_meat.hpp
+include/armadillo_bits/op_omit_bones.hpp
+include/armadillo_bits/op_omit_meat.hpp
include/armadillo_bits/op_orth_null_bones.hpp
include/armadillo_bits/op_orth_null_meat.hpp
include/armadillo_bits/op_pinv_bones.hpp
@@ -576,6 +580,8 @@ include/armadillo_bits/spop_norm_bones.hpp
include/armadillo_bits/spop_norm_meat.hpp
include/armadillo_bits/spop_normalise_bones.hpp
include/armadillo_bits/spop_normalise_meat.hpp
+include/armadillo_bits/spop_omit_bones.hpp
+include/armadillo_bits/spop_omit_meat.hpp
include/armadillo_bits/spop_relational_bones.hpp
include/armadillo_bits/spop_relational_meat.hpp
include/armadillo_bits/spop_repmat_bones.hpp
diff --git a/math/geogebra/Makefile b/math/geogebra/Makefile
index bd2e75afa841..c4ce791486da 100644
--- a/math/geogebra/Makefile
+++ b/math/geogebra/Makefile
@@ -1,5 +1,5 @@
PORTNAME= geogebra
-DISTVERSION= 5-2-892-0
+DISTVERSION= 5-2-893-2
CATEGORIES= math education java
MASTER_SITES= http://download.geogebra.org/installers/5.2/ \
https://static.geogebra.org/images/ \
diff --git a/math/geogebra/distinfo b/math/geogebra/distinfo
index ab1116ab8ad5..d80275f6e7d8 100644
--- a/math/geogebra/distinfo
+++ b/math/geogebra/distinfo
@@ -1,6 +1,6 @@
-TIMESTAMP = 1751745744
-SHA256 (GeoGebra-Linux-Portable-5-2-892-0.tar.bz2) = ef8bf8faf61b7a214fdff508dafb22590e0102ded645d6905f314b13734593da
-SIZE (GeoGebra-Linux-Portable-5-2-892-0.tar.bz2) = 62844805
+TIMESTAMP = 1752431030
+SHA256 (GeoGebra-Linux-Portable-5-2-893-2.tar.bz2) = 7c340c85663e0625422a1f374526edd557d969d4699560482ead754e87d3e869
+SIZE (GeoGebra-Linux-Portable-5-2-893-2.tar.bz2) = 62913006
SHA256 (geogebra.png) = e97122d77209e2c235f5afcee8f783c1e933d14062851ac73a4ed7a6520c5614
SIZE (geogebra.png) = 4018
SHA256 (geogebra-logo.svg) = 55ded6b5ec9ad382494f858d8ab5def0ed6c7d529481cd212863b2edde3b5e07
diff --git a/math/gismo/Makefile b/math/gismo/Makefile
index 736e9da8ac9e..72b83c6681a2 100644
--- a/math/gismo/Makefile
+++ b/math/gismo/Makefile
@@ -1,6 +1,6 @@
PORTNAME= gismo
DISTVERSIONPREFIX= v
-DISTVERSION= 25.01.0
+DISTVERSION= 25.07.0
CATEGORIES= math # geometry
MAINTAINER= yuri@FreeBSD.org
@@ -32,6 +32,6 @@ CMAKE_ARGS+= -DTARGET_ARCHITECTURE="arm1176jzf-s"
CMAKE_ARGS+= -DTARGET_ARCHITECTURE="cortex-a7"
.endif
-# tests as of 25.01.0: 99% tests passed, 1 tests failed out of 86, see https://github.com/gismo/gismo/issues/466
+# tests as of 25.07.0: 99% tests passed, 1 tests failed out of 90, see https://github.com/gismo/gismo/issues/466
.include <bsd.port.post.mk>
diff --git a/math/gismo/distinfo b/math/gismo/distinfo
index acabfa6372c8..d724c4281079 100644
--- a/math/gismo/distinfo
+++ b/math/gismo/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1736489045
-SHA256 (gismo-gismo-v25.01.0_GH0.tar.gz) = d1250b3d3a37c9d7d3f9cb63e4a36ae07b76aa47335847008be7516cc390c61e
-SIZE (gismo-gismo-v25.01.0_GH0.tar.gz) = 17805040
+TIMESTAMP = 1752473570
+SHA256 (gismo-gismo-v25.07.0_GH0.tar.gz) = 6d20f0b43ed80d3bf34fcabdac10a6bed6afbb314239dcbd0495a362a87aca9a
+SIZE (gismo-gismo-v25.07.0_GH0.tar.gz) = 17852458
diff --git a/math/gismo/files/patch-cmake_gsConfig.cmake b/math/gismo/files/patch-cmake_gsConfig.cmake
deleted file mode 100644
index b889ae68462d..000000000000
--- a/math/gismo/files/patch-cmake_gsConfig.cmake
+++ /dev/null
@@ -1,14 +0,0 @@
-- -no-sse2 flag is added by cmake: https://github.com/gismo/gismo/issues/570
-- this triggers the clang crash: https://bugs.llvm.org/show_bug.cgi?id=51468
-
---- cmake/gsConfig.cmake.orig 2023-12-31 16:59:24 UTC
-+++ cmake/gsConfig.cmake
-@@ -270,7 +270,7 @@ endif()
- #string(TOUPPER ${CMAKE_BUILD_TYPE} TEMP)
- #message(STATUS "Using compilation flags: ${CMAKE_CXX_FLAGS}, ${CMAKE_CXX_FLAGS_${TEMP}}")
-
--if("x${CMAKE_BUILD_TYPE}" STREQUAL "xRelease" AND NOT ARCHITECTURE_CXX_FLAGS)
-+if(FALSE AND "x${CMAKE_BUILD_TYPE}" STREQUAL "xRelease" AND NOT ARCHITECTURE_CXX_FLAGS)
- include( OptimizeForArchitecture )
- OptimizeForArchitecture()
- foreach (flag ${ARCHITECTURE_CXX_FLAGS})
diff --git a/math/gismo/pkg-plist b/math/gismo/pkg-plist
index 72e4a2ea9e24..d0ab48de3f70 100644
--- a/math/gismo/pkg-plist
+++ b/math/gismo/pkg-plist
@@ -10,13 +10,14 @@ bin/basis_example
bin/biharmonic2_example
bin/biharmonic_example
bin/commandLineArg_example
+bin/compositions_example
bin/constrained_fitting
+bin/domains_example
bin/fileIo_example
bin/fitting_example
bin/fitting_mspline
bin/geometry_example
bin/gsAdaptiveMeshing_example
-bin/gsExpressions_test
bin/gsHBox_example
bin/gsInterpolateMap
bin/gsMakeMultiPatch
@@ -48,6 +49,7 @@ bin/quasiInterpolation_example
bin/refitting_example
bin/sparseSolvers_example
bin/stokes_ieti_example
+bin/surfaceReparametrization_example
bin/thbRefinement_example
bin/thbSplineBasis_example
bin/triangulatedMeshToSolid_example
@@ -55,7 +57,6 @@ bin/trilinos_example
include/gismo/eiquadprog.hpp
include/gismo/gdcpp.h
include/gismo/gismo.h
-include/gismo/gsAssembler/expr/precomputed_expr.h
include/gismo/gsAssembler/gsAdaptiveMeshing.h
include/gismo/gsAssembler/gsAdaptiveMeshingCompare.h
include/gismo/gsAssembler/gsAdaptiveMeshingUtils.h
@@ -69,8 +70,6 @@ include/gismo/gsAssembler/gsCPPInterface.h
include/gismo/gsAssembler/gsDirichletValues.h
include/gismo/gsAssembler/gsExprAssembler.h
include/gismo/gsAssembler/gsExprEvaluator.h
-include/gismo/gsAssembler/gsExprHelper.h
-include/gismo/gsAssembler/gsExpressions.h
include/gismo/gsAssembler/gsGaussRule.h
include/gismo/gsAssembler/gsGenericAssembler.h
include/gismo/gsAssembler/gsHeatEquation.h
@@ -101,6 +100,9 @@ include/gismo/gsCore/gsBasisRefs.h
include/gismo/gsCore/gsBoundary.h
include/gismo/gsCore/gsBoxTopology.h
include/gismo/gsCore/gsBulk.h
+include/gismo/gsCore/gsComposedBasis.h
+include/gismo/gsCore/gsComposedFunction.h
+include/gismo/gsCore/gsComposedGeometry.h
include/gismo/gsCore/gsConfig.h
include/gismo/gsCore/gsConfigExt.h
include/gismo/gsCore/gsConstantBasis.h
@@ -108,8 +110,6 @@ include/gismo/gsCore/gsConstantFunction.h
include/gismo/gsCore/gsCurve.h
include/gismo/gsCore/gsDebug.h
include/gismo/gsCore/gsDofMapper.h
-include/gismo/gsCore/gsDomain.h
-include/gismo/gsCore/gsDomainIterator.h
include/gismo/gsCore/gsExport.h
include/gismo/gsCore/gsField.h
include/gismo/gsCore/gsFieldCreator.h
@@ -137,6 +137,23 @@ include/gismo/gsCore/gsSurface.h
include/gismo/gsCore/gsSysInfo.h
include/gismo/gsCore/gsTemplateTools.h
include/gismo/gsCore/gsVolume.h
+include/gismo/gsDomain/gsBreaksIterator.h
+include/gismo/gsDomain/gsCompositeDomain.h
+include/gismo/gsDomain/gsDomain.h
+include/gismo/gsDomain/gsDomainIterator.h
+include/gismo/gsDomain/gsHDomain.h
+include/gismo/gsDomain/gsHDomainBoundaryIterator.h
+include/gismo/gsDomain/gsHDomainIterator.h
+include/gismo/gsDomain/gsHDomainLeafIter.h
+include/gismo/gsDomain/gsHDomainSliceIter.h
+include/gismo/gsDomain/gsHTree.h
+include/gismo/gsDomain/gsKdNode.h
+include/gismo/gsDomain/gsKnotDomainIterator.h
+include/gismo/gsDomain/gsPointDomain.h
+include/gismo/gsDomain/gsPointDomainIterator.h
+include/gismo/gsDomain/gsTensorDomain.h
+include/gismo/gsDomain/gsTensorDomainBoundaryIterator.h
+include/gismo/gsDomain/gsTensorDomainIterator.h
include/gismo/gsEigen/Cholesky
include/gismo/gsEigen/CholmodSupport
include/gismo/gsEigen/Core
@@ -474,21 +491,81 @@ include/gismo/gsEigen/src/plugins/IndexedViewMethods.h
include/gismo/gsEigen/src/plugins/MatrixCwiseBinaryOps.h
include/gismo/gsEigen/src/plugins/MatrixCwiseUnaryOps.h
include/gismo/gsEigen/src/plugins/ReshapedMethods.h
+include/gismo/gsExpressions/_expr.h
+include/gismo/gsExpressions/_expr_macros.h
+include/gismo/gsExpressions/abs_expr.h
+include/gismo/gsExpressions/add_expr.h
+include/gismo/gsExpressions/adjugate_expr.h
+include/gismo/gsExpressions/asdiag_expr.h
+include/gismo/gsExpressions/colBlocks_expr.h
+include/gismo/gsExpressions/col_expr.h
+include/gismo/gsExpressions/collapse_expr.h
+include/gismo/gsExpressions/colsum_expr.h
+include/gismo/gsExpressions/constMat_expr.h
+include/gismo/gsExpressions/cross_expr.h
+include/gismo/gsExpressions/curl_expr.h
+include/gismo/gsExpressions/dJacG_expr.h
+include/gismo/gsExpressions/dJacdc_expr.h
+include/gismo/gsExpressions/diag_expr.h
+include/gismo/gsExpressions/divide_expr.h
+include/gismo/gsExpressions/example_expr.h
+include/gismo/gsExpressions/exp_expr.h
+include/gismo/gsExpressions/fform2nd_expr.h
+include/gismo/gsExpressions/flat_expr.h
+include/gismo/gsExpressions/frprod_expr.h
+include/gismo/gsExpressions/grad_expr.h
+include/gismo/gsExpressions/gsComposition.h
+include/gismo/gsExpressions/gsExprHelper.h
+include/gismo/gsExpressions/gsExpressions.h
+include/gismo/gsExpressions/gsFeElement.h
+include/gismo/gsExpressions/gsFeSolution.h
+include/gismo/gsExpressions/gsFeSpace.h
+include/gismo/gsExpressions/gsFeSpaceData.h
+include/gismo/gsExpressions/gsFeVariable.h
+include/gismo/gsExpressions/gsGeometryMap.h
+include/gismo/gsExpressions/gsNullExpr.h
+include/gismo/gsExpressions/gsVector_expr.h
+include/gismo/gsExpressions/hess_expr.h
+include/gismo/gsExpressions/idMat_expr.h
+include/gismo/gsExpressions/integral_expr.h
+include/gismo/gsExpressions/jacInv_expr.h
+include/gismo/gsExpressions/jac_expr.h
+include/gismo/gsExpressions/lapl_expr.h
+include/gismo/gsExpressions/matrix_by_space_expr.h
+include/gismo/gsExpressions/matrix_by_space_tr_expr.h
+include/gismo/gsExpressions/max_expr.h
+include/gismo/gsExpressions/meas_expr.h
+include/gismo/gsExpressions/mult_expr.h
+include/gismo/gsExpressions/nabla2_expr.h
+include/gismo/gsExpressions/nabla_expr.h
+include/gismo/gsExpressions/normal_expr.h
+include/gismo/gsExpressions/onormal_expr.h
+include/gismo/gsExpressions/pow_expr.h
+include/gismo/gsExpressions/ppart_expr.h
+include/gismo/gsExpressions/ppartval_expr.h
+include/gismo/gsExpressions/precomputed_expr.h
+include/gismo/gsExpressions/replicate_expr.h
+include/gismo/gsExpressions/reshape_expr.h
+include/gismo/gsExpressions/rowsum_expr.h
+include/gismo/gsExpressions/sign_expr.h
+include/gismo/gsExpressions/sub_expr.h
+include/gismo/gsExpressions/summ_expr.h
+include/gismo/gsExpressions/symbol_expr.h
+include/gismo/gsExpressions/symm_expr.h
+include/gismo/gsExpressions/symmetrize_expr.h
+include/gismo/gsExpressions/tangent_expr.h
+include/gismo/gsExpressions/temp_expr.h
+include/gismo/gsExpressions/trace_expr.h
+include/gismo/gsExpressions/transpose_expr.h
+include/gismo/gsExpressions/value_expr.h
+include/gismo/gsExpressions/voigt_expr.h
include/gismo/gsHSplines/gsAABB.h
include/gismo/gsHSplines/gsAAPolyline.h
-include/gismo/gsHSplines/gsHBSpline.h
-include/gismo/gsHSplines/gsHBSplineBasis.h
include/gismo/gsHSplines/gsHBox.h
include/gismo/gsHSplines/gsHBoxContainer.h
include/gismo/gsHSplines/gsHBoxUtils.h
-include/gismo/gsHSplines/gsHDomain.h
-include/gismo/gsHSplines/gsHDomainBoundaryIterator.h
-include/gismo/gsHSplines/gsHDomainIterator.h
-include/gismo/gsHSplines/gsHDomainLeafIter.h
-include/gismo/gsHSplines/gsHDomainSliceIter.h
include/gismo/gsHSplines/gsHFitting.h
include/gismo/gsHSplines/gsHTensorBasis.h
-include/gismo/gsHSplines/gsKdNode.h
include/gismo/gsHSplines/gsRationalTHBSpline.h
include/gismo/gsHSplines/gsRationalTHBSplineBasis.h
include/gismo/gsHSplines/gsTHBSpline.h
@@ -500,8 +577,8 @@ include/gismo/gsIO/gsCsv.h
include/gismo/gsIO/gsFileData.h
include/gismo/gsIO/gsFileManager.h
include/gismo/gsIO/gsGoTools.h
-include/gismo/gsIO/gsIOUtils.h
include/gismo/gsIO/gsOptionList.h
+include/gismo/gsIO/gsOptionListXml.h
include/gismo/gsIO/gsParaviewCollection.h
include/gismo/gsIO/gsParaviewDataSet.h
include/gismo/gsIO/gsParaviewUtils.h
@@ -559,6 +636,7 @@ include/gismo/gsModeling/gsSolidHalfEdge.h
include/gismo/gsModeling/gsSolidHalfFace.h
include/gismo/gsModeling/gsSolidHeVertex.h
include/gismo/gsModeling/gsSpringPatch.h
+include/gismo/gsModeling/gsSurfaceReparameterization.h
include/gismo/gsModeling/gsTemplate.h
include/gismo/gsModeling/gsTriMeshToSolid.h
include/gismo/gsModeling/gsTrimSurface.h
@@ -573,6 +651,7 @@ include/gismo/gsNurbs/gsBoehm.h
include/gismo/gsNurbs/gsCurveCurveIntersection.h
include/gismo/gsNurbs/gsKnotIterator.h
include/gismo/gsNurbs/gsKnotVector.h
+include/gismo/gsNurbs/gsMobiusMap.h
include/gismo/gsNurbs/gsNurbs.h
include/gismo/gsNurbs/gsNurbsBasis.h
include/gismo/gsNurbs/gsNurbsCreator.h
@@ -580,8 +659,6 @@ include/gismo/gsNurbs/gsTensorBSpline.h
include/gismo/gsNurbs/gsTensorBSplineBasis.h
include/gismo/gsNurbs/gsTensorNurbs.h
include/gismo/gsNurbs/gsTensorNurbsBasis.h
-include/gismo/gsOpennurbs/gsReadOpenNurbs.h
-include/gismo/gsOpennurbs/gsWriteOpenNurbs.h
include/gismo/gsOptimizer/gsFunctionAdaptor.h
include/gismo/gsOptimizer/gsGradientDescent.h
include/gismo/gsOptimizer/gsLevenbergMarquardt.h
@@ -626,13 +703,10 @@ include/gismo/gsSolver/gsSumOp.h
include/gismo/gsTensor/gsGenericTensorBasis.h
include/gismo/gsTensor/gsGridIterator.h
include/gismo/gsTensor/gsTensorBasis.h
-include/gismo/gsTensor/gsTensorDomainBoundaryIterator.h
-include/gismo/gsTensor/gsTensorDomainIterator.h
include/gismo/gsTensor/gsTensorTools.h
include/gismo/gsUtils/gsBoundedPriorityQueue.h
include/gismo/gsUtils/gsCombinatorics.h
include/gismo/gsUtils/gsFunctionWithDerivatives.h
-include/gismo/gsUtils/gsKDTree.h
include/gismo/gsUtils/gsL2Projection.h
include/gismo/gsUtils/gsMesh/gsBoundingBox.h
include/gismo/gsUtils/gsMesh/gsCell.h
@@ -711,7 +785,7 @@ lib/gismo/ofa/cpuinfo_x86.cxx
lib/libgismo.a
lib/libgismo.so
lib/libgismo.so.25
-lib/libgismo.so.25.1.0
+lib/libgismo.so.25.7.0
libdata/pkgconfig/gismo.pc
%%DATADIR%%data/breps/2D/duck_BRep.xml
%%DATADIR%%data/breps/3D/duck_BRep.xml
@@ -763,6 +837,8 @@ libdata/pkgconfig/gismo.pc
%%DATADIR%%data/pde/poisson2d_bvp_bin.xml
%%DATADIR%%data/pde/poisson2d_sin.xml
%%DATADIR%%data/pde/poisson3d_sin.xml
+%%DATADIR%%data/pde/surfacepoisson_sphere_bvp.xml
+%%DATADIR%%data/pde/surfacepoisson_torus_bvp.xml
%%DATADIR%%data/planar/hexagon_3p.xml
%%DATADIR%%data/planar/hexagon_5p.xml
%%DATADIR%%data/planar/lshape2d_3patches_tens.xml
@@ -778,6 +854,7 @@ libdata/pkgconfig/gismo.pc
%%DATADIR%%data/stl/patchLisa.stl
%%DATADIR%%data/stl/patchLisa_1.stl
%%DATADIR%%data/surfaces/car.xml
+%%DATADIR%%data/surfaces/crazySurf.xml
%%DATADIR%%data/surfaces/cylinder.xml
%%DATADIR%%data/surfaces/egg.xml
%%DATADIR%%data/surfaces/g_plus_s_surf.xml
@@ -788,6 +865,11 @@ libdata/pkgconfig/gismo.pc
%%DATADIR%%data/surfaces/thbs_face_3levels.xml
%%DATADIR%%data/thbbasis/simple.xml
%%DATADIR%%data/thbbasis/thbs_basis_02.xml
+%%DATADIR%%data/unittests/gsComposedBasis.xml
+%%DATADIR%%data/unittests/gsComposedFunction.xml
+%%DATADIR%%data/unittests/gsComposedGeometry.xml
+%%DATADIR%%data/unittests/gsConstantFunction.xml
+%%DATADIR%%data/unittests/gsFunctionExpr.xml
%%DATADIR%%data/unittests/matrix.xml
%%DATADIR%%data/volumes/GshapedVolume.xml
%%DATADIR%%data/volumes/cube.xml
diff --git a/math/py-awkward-cpp/Makefile b/math/py-awkward-cpp/Makefile
index c13e55e9f295..0532d55560ef 100644
--- a/math/py-awkward-cpp/Makefile
+++ b/math/py-awkward-cpp/Makefile
@@ -1,5 +1,5 @@
PORTNAME= awkward-cpp
-PORTVERSION= 46
+PORTVERSION= 47
CATEGORIES= math python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/py-awkward-cpp/distinfo b/math/py-awkward-cpp/distinfo
index 31362187a7f6..bd191dd6466c 100644
--- a/math/py-awkward-cpp/distinfo
+++ b/math/py-awkward-cpp/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1747715450
-SHA256 (awkward_cpp-46.tar.gz) = b82becb65a33280c6c27336ee5c037c5b7e394be52565aa31e087ca54adce59e
-SIZE (awkward_cpp-46.tar.gz) = 1688149
+TIMESTAMP = 1752266152
+SHA256 (awkward_cpp-47.tar.gz) = 676cf4976810edab32187edf5a8a716af95047b9038c96d27d3be44f1331950f
+SIZE (awkward_cpp-47.tar.gz) = 1485902
diff --git a/math/py-awkward-cpp/files/patch-pyproject.toml b/math/py-awkward-cpp/files/patch-pyproject.toml
new file mode 100644
index 000000000000..61728bd4677c
--- /dev/null
+++ b/math/py-awkward-cpp/files/patch-pyproject.toml
@@ -0,0 +1,12 @@
+--- pyproject.toml.orig 2025-07-03 22:14:18 UTC
++++ pyproject.toml
+@@ -43,8 +43,7 @@ classifiers = [
+ "Topic :: Software Development",
+ "Topic :: Utilities",
+ ]
+-license = "BSD-3-Clause AND MIT"
+-license-files = ["LICENSE", "rapidjson/license.txt"]
++license = {text = "BSD-3-Clause"}
+ requires-python = ">=3.9"
+
+ [project.urls]
diff --git a/math/py-awkward/Makefile b/math/py-awkward/Makefile
index 904d57ed0bfa..fe76f73cfd3e 100644
--- a/math/py-awkward/Makefile
+++ b/math/py-awkward/Makefile
@@ -1,5 +1,5 @@
PORTNAME= awkward
-PORTVERSION= 2.8.4
+PORTVERSION= 2.8.5
CATEGORIES= math python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -14,7 +14,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-fancy-pypi-readme>=0:devel/py-hatch-fancy-pypi-readme@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}hatchling>=1.10.0:devel/py-hatchling@${PY_FLAVOR}
-RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}awkward-cpp>=46<46_99:math/py-awkward-cpp@${PY_FLAVOR} \
+RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}awkward-cpp>=47<47_99:math/py-awkward-cpp@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}fsspec>=2022.11.0:filesystems/py-fsspec@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}numpy>=1.18.0,1:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR}
diff --git a/math/py-awkward/distinfo b/math/py-awkward/distinfo
index b634b5801200..9da7751e000e 100644
--- a/math/py-awkward/distinfo
+++ b/math/py-awkward/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1750188124
-SHA256 (awkward-2.8.4.tar.gz) = 840ee49120d882c892e12fe8be2195991cab95c3dab4a6ee76b4a9696a1ebc9b
-SIZE (awkward-2.8.4.tar.gz) = 6222255
+TIMESTAMP = 1752266150
+SHA256 (awkward-2.8.5.tar.gz) = 4b9049440bb98214e05908098afd0d4f66af0b1b23c158159f9774db27447c89
+SIZE (awkward-2.8.5.tar.gz) = 6223297
diff --git a/math/py-awkward/files/patch-pyproject.toml b/math/py-awkward/files/patch-pyproject.toml
new file mode 100644
index 000000000000..7231149ee6d6
--- /dev/null
+++ b/math/py-awkward/files/patch-pyproject.toml
@@ -0,0 +1,12 @@
+--- pyproject.toml.orig 2025-07-03 22:14:18 UTC
++++ pyproject.toml
+@@ -9,8 +9,7 @@ description = "Manipulate JSON-like data with NumPy-li
+ name = "awkward"
+ version = "2.8.5"
+ description = "Manipulate JSON-like data with NumPy-like idioms."
+-license = "BSD-3-Clause"
+-license-files = ["LICENSE"]
++license = { text = "BSD-3-Clause" }
+ requires-python = ">=3.9"
+ authors = [
+ { name = "Jim Pivarski", email = "jpivarski@gmail.com" },
diff --git a/math/py-modin/Makefile b/math/py-modin/Makefile
index 654ce60a71d9..07ef57565dc7 100644
--- a/math/py-modin/Makefile
+++ b/math/py-modin/Makefile
@@ -1,5 +1,5 @@
PORTNAME= modin
-PORTVERSION= 0.33.2
+PORTVERSION= 0.34.1
CATEGORIES= math python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/py-modin/distinfo b/math/py-modin/distinfo
index 469756818138..bf98632db566 100644
--- a/math/py-modin/distinfo
+++ b/math/py-modin/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1750954212
-SHA256 (modin-0.33.2.tar.gz) = 63fa7d5b2578d98e3f236ec3460ea97df631676d62604ffe030642a946e03925
-SIZE (modin-0.33.2.tar.gz) = 886775
+TIMESTAMP = 1752266154
+SHA256 (modin-0.34.1.tar.gz) = 421b498f0cca4be41241936d051602603715f06e1568307b8b52fcd98ed75263
+SIZE (modin-0.34.1.tar.gz) = 892196
diff --git a/math/py-narwhals/Makefile b/math/py-narwhals/Makefile
index b4ad0c603463..5777052a57e3 100644
--- a/math/py-narwhals/Makefile
+++ b/math/py-narwhals/Makefile
@@ -1,5 +1,5 @@
PORTNAME= narwhals
-PORTVERSION= 1.45.0
+PORTVERSION= 1.46.0
CATEGORIES= math python
MASTER_SITES= PYPI \
https://github.com/narwhals-dev/narwhals/releases/download/v${PORTVERSION}/
diff --git a/math/py-narwhals/distinfo b/math/py-narwhals/distinfo
index 575a984268cc..9aafed610074 100644
--- a/math/py-narwhals/distinfo
+++ b/math/py-narwhals/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1751375057
-SHA256 (narwhals-1.45.0.tar.gz) = f9ecefb9d09cda6fefa8ead10dc37a79129b6c78b0ac7117d21b4d4486bdd0d1
-SIZE (narwhals-1.45.0.tar.gz) = 508812
+TIMESTAMP = 1752266156
+SHA256 (narwhals-1.46.0.tar.gz) = fd7e53860b233c2b5566d8b4e1b3e8e9c01b5a87649a9f9a322742000f207a60
+SIZE (narwhals-1.46.0.tar.gz) = 512060
diff --git a/math/scilab/Makefile b/math/scilab/Makefile
index 5ddb6ca33416..eed99f22294e 100644
--- a/math/scilab/Makefile
+++ b/math/scilab/Makefile
@@ -1,6 +1,6 @@
PORTNAME= scilab
DISTVERSION= 6.1.1
-PORTREVISION= 22
+PORTREVISION= 23
CATEGORIES= math cad java
MASTER_SITES= https://www.scilab.org/download/${DISTVERSION}/
DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX}
@@ -14,8 +14,6 @@ LICENSE_COMB= dual
LICENSE_FILE_GPLv2= ${WRKSRC}/COPYING
LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/COPYING-BSD
-BROKEN= Fails to build, configure: error: Could not find or use the Java package/jar saxon used by Saxon XSLT Processor (looking for package com.icl.saxon.Loader)
-
LIB_DEPENDS= libpcre.so:devel/pcre \
libcurl.so:ftp/curl \
libhdf5.so:science/hdf5 \
@@ -86,7 +84,7 @@ _GUI_DEPENDS+= ${JAVALIBDIR}/commons-beanutils.jar:java/apache-commons-beanutils
${LOCALBASE}/bin/splint:devel/splint
# Documentation building:
_GUI_DEPENDS+= ${LOCALBASE}/share/xsl/docbook/javahelp/javahelp.xsl:textproc/docbook-xsl \
- ${JAVALIBDIR}/saxon-he-12.6.jar:textproc/saxon-he \
+ saxon-he>=12.8:textproc/saxon-he \
${_JAVADIR}/xml-commons/xml-apis-ext.jar:textproc/xml-commons \
xsltproc:textproc/libxslt
# Other gui deps:
@@ -148,6 +146,7 @@ FFLAGS+= -fallow-argument-mismatch
post-patch:
@${REINPLACE_CMD} 's,/usr/local,${LOCALBASE},' ${WRKSRC}/etc/librarypath.xml
@${REINPLACE_CMD} -e 's, gfortran, ${FC},' ${WRKSRC}/modules/dynamic_link/src/scripts/configure
+ @${REINPLACE_CMD} -e 's,valgrind,X_X_NONEXIST_X_X,' ${WRKSRC}/configure
.if ${COMPILER_TYPE} == clang
@${REINPLACE_CMD} -e 's|std::filesystem|std::__fs::filesystem|g' \
${WRKSRC}/modules/fileio/src/cpp/fullpath.cpp \
diff --git a/math/scilab/files/patch-libxml2.13 b/math/scilab/files/patch-libxml2.13
new file mode 100644
index 000000000000..d304ca60c5df
--- /dev/null
+++ b/math/scilab/files/patch-libxml2.13
@@ -0,0 +1,41 @@
+diff -up modules/scicos/src/cpp/XMIResource_load.cpp.orig modules/scicos/src/cpp/XMIResource_load.cpp
+--- modules/scicos/src/cpp/XMIResource_load.cpp.orig 2021-07-15 13:55:14.000000000 +0200
++++ modules/scicos/src/cpp/XMIResource_load.cpp 2025-07-14 14:43:30.773655000 +0200
+@@ -56,11 +56,11 @@ struct LibXML2State
+ LibXML2State()
+ {
+ xmlGenericErrorFunc f = &console_print;
+- initGenericErrorDefaultFunc(&f);
++ xmlSetGenericErrorFunc(nullptr, f);
+ }
+ ~LibXML2State()
+ {
+- initGenericErrorDefaultFunc(nullptr);
++ xmlSetGenericErrorFunc(nullptr, nullptr);
+ }
+ };
+
+diff -up modules/xml/src/cpp/XMLDocument.cpp.orig modules/xml/src/cpp/XMLDocument.cpp
+--- modules/xml/src/cpp/XMLDocument.cpp.orig 2021-07-15 13:55:21.000000000 +0200
++++ modules/xml/src/cpp/XMLDocument.cpp 2025-07-14 14:31:16.844487000 +0200
+@@ -520,7 +520,7 @@ void XMLDocument::errorFunction(void *ctx, const char
+ errorBuffer.append(str);
+ }
+
+-void XMLDocument::errorXPathFunction(void *ctx, xmlError * error)
++void XMLDocument::errorXPathFunction(void *ctx, const xmlError * error)
+ {
+ errorXPathBuffer.append(error->message);
+ }
+diff -up modules/xml/src/cpp/XMLDocument.hxx.orig modules/xml/src/cpp/XMLDocument.hxx
+--- modules/xml/src/cpp/XMLDocument.hxx.orig 2021-07-15 13:55:21.000000000 +0200
++++ modules/xml/src/cpp/XMLDocument.hxx 2025-07-14 14:31:29.264578000 +0200
+@@ -175,7 +175,7 @@ class XML_SCILAB_IMPEXP XMLDocument: public XMLObject
+ * Error function used when the XPath query is compiled/
+ * @see http://xmlsoft.org/html/libxml-xmlerror.html#xmlStructuredErrorFunc
+ */
+- static void errorXPathFunction(void *ctx, xmlError * error);
++ static void errorXPathFunction(void *ctx, const xmlError * error);
+
+ /**
+ * Reads and parses a document given in a file.
generated by cgit v1.2.3 (git 2.25.1) at 2025-07-14 15:58:36 +0000