diff options
Diffstat (limited to 'math')
| -rw-r--r-- | math/add/Makefile | 16 | ||||
| -rw-r--r-- | math/add/distinfo | 6 | ||||
| -rw-r--r-- | math/gismo/Makefile | 4 | ||||
| -rw-r--r-- | math/gismo/distinfo | 6 | ||||
| -rw-r--r-- | math/gismo/files/patch-cmake_gsConfig.cmake | 14 | ||||
| -rw-r--r-- | math/gismo/pkg-plist | 124 | ||||
| -rw-r--r-- | math/py-igraph/Makefile | 11 | ||||
| -rw-r--r-- | math/py-igraph/distinfo | 6 | ||||
| -rw-r--r-- | math/py-igraph/files/patch-setup.py | 20 | ||||
| -rw-r--r-- | math/py-igraph/files/patch-vendor_source_igraph_etc_cmake_compilers.cmake | 19 | ||||
| -rw-r--r-- | math/scilab/Makefile | 7 | ||||
| -rw-r--r-- | math/scilab/files/patch-libxml2.13 | 41 |
12 files changed, 200 insertions, 74 deletions
diff --git a/math/add/Makefile b/math/add/Makefile index 01c049a6b080..83ddb5415bc9 100644 --- a/math/add/Makefile +++ b/math/add/Makefile @@ -1,12 +1,11 @@ PORTNAME= add -PORTVERSION= 20230205 -PORTREVISION= 1 +PORTVERSION= 20240916 CATEGORIES= math -MASTER_SITES= ftp://dickey.his.com/add/ +MASTER_SITES= https://invisible-island.net/archives/add/ MAINTAINER= eduardo@FreeBSD.org COMMENT= Full-screen editing calculator -WWW= https://dickey.his.com/add/add.html +WWW= https://invisible-island.net/add/add.html LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING @@ -21,9 +20,12 @@ PLIST_FILES= bin/add \ PORTDATA= add.hlp do-install: - ${INSTALL_PROGRAM} ${WRKSRC}/add ${STAGEDIR}${PREFIX}/bin - ${INSTALL_MAN} ${WRKSRC}/add.1 ${STAGEDIR}${PREFIX}/share/man/man1 + ${INSTALL_PROGRAM} ${WRKSRC}/add \ + ${STAGEDIR}${PREFIX}/bin + ${INSTALL_MAN} ${WRKSRC}/add.1 \ + ${STAGEDIR}${PREFIX}/share/man/man1 @${MKDIR} ${STAGEDIR}${DATADIR} - ${INSTALL_DATA} ${WRKSRC}/add.hlp ${STAGEDIR}${DATADIR} + ${INSTALL_DATA} ${WRKSRC}/add.hlp \ + ${STAGEDIR}${DATADIR} .include <bsd.port.mk> diff --git a/math/add/distinfo b/math/add/distinfo index 8428d01c1a99..56beb39974ce 100644 --- a/math/add/distinfo +++ b/math/add/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1675932071 -SHA256 (add-20230205.tgz) = 68e216241100d0cf098e139c24fe04880b9be60a8643cd82f8925ac0ce3d7260 -SIZE (add-20230205.tgz) = 179162 +TIMESTAMP = 1752529419 +SHA256 (add-20240916.tgz) = 7290c6c0943c139546687bb552b14e2551d3e14f6482a255673f6e7a9d279e27 +SIZE (add-20240916.tgz) = 182153 diff --git a/math/gismo/Makefile b/math/gismo/Makefile index 736e9da8ac9e..72b83c6681a2 100644 --- a/math/gismo/Makefile +++ b/math/gismo/Makefile @@ -1,6 +1,6 @@ PORTNAME= gismo DISTVERSIONPREFIX= v -DISTVERSION= 25.01.0 +DISTVERSION= 25.07.0 CATEGORIES= math # geometry MAINTAINER= yuri@FreeBSD.org @@ -32,6 +32,6 @@ CMAKE_ARGS+= -DTARGET_ARCHITECTURE="arm1176jzf-s" CMAKE_ARGS+= -DTARGET_ARCHITECTURE="cortex-a7" .endif -# tests as of 25.01.0: 99% tests passed, 1 tests failed out of 86, see https://github.com/gismo/gismo/issues/466 +# tests as of 25.07.0: 99% tests passed, 1 tests failed out of 90, see https://github.com/gismo/gismo/issues/466 .include <bsd.port.post.mk> diff --git a/math/gismo/distinfo b/math/gismo/distinfo index acabfa6372c8..d724c4281079 100644 --- a/math/gismo/distinfo +++ b/math/gismo/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1736489045 -SHA256 (gismo-gismo-v25.01.0_GH0.tar.gz) = d1250b3d3a37c9d7d3f9cb63e4a36ae07b76aa47335847008be7516cc390c61e -SIZE (gismo-gismo-v25.01.0_GH0.tar.gz) = 17805040 +TIMESTAMP = 1752473570 +SHA256 (gismo-gismo-v25.07.0_GH0.tar.gz) = 6d20f0b43ed80d3bf34fcabdac10a6bed6afbb314239dcbd0495a362a87aca9a +SIZE (gismo-gismo-v25.07.0_GH0.tar.gz) = 17852458 diff --git a/math/gismo/files/patch-cmake_gsConfig.cmake b/math/gismo/files/patch-cmake_gsConfig.cmake deleted file mode 100644 index b889ae68462d..000000000000 --- a/math/gismo/files/patch-cmake_gsConfig.cmake +++ /dev/null @@ -1,14 +0,0 @@ -- -no-sse2 flag is added by cmake: https://github.com/gismo/gismo/issues/570 -- this triggers the clang crash: https://bugs.llvm.org/show_bug.cgi?id=51468 - ---- cmake/gsConfig.cmake.orig 2023-12-31 16:59:24 UTC -+++ cmake/gsConfig.cmake -@@ -270,7 +270,7 @@ endif() - #string(TOUPPER ${CMAKE_BUILD_TYPE} TEMP) - #message(STATUS "Using compilation flags: ${CMAKE_CXX_FLAGS}, ${CMAKE_CXX_FLAGS_${TEMP}}") - --if("x${CMAKE_BUILD_TYPE}" STREQUAL "xRelease" AND NOT ARCHITECTURE_CXX_FLAGS) -+if(FALSE AND "x${CMAKE_BUILD_TYPE}" STREQUAL "xRelease" AND NOT ARCHITECTURE_CXX_FLAGS) - include( OptimizeForArchitecture ) - OptimizeForArchitecture() - foreach (flag ${ARCHITECTURE_CXX_FLAGS}) diff --git a/math/gismo/pkg-plist b/math/gismo/pkg-plist index 72e4a2ea9e24..d0ab48de3f70 100644 --- a/math/gismo/pkg-plist +++ b/math/gismo/pkg-plist @@ -10,13 +10,14 @@ bin/basis_example bin/biharmonic2_example bin/biharmonic_example bin/commandLineArg_example +bin/compositions_example bin/constrained_fitting +bin/domains_example bin/fileIo_example bin/fitting_example bin/fitting_mspline bin/geometry_example bin/gsAdaptiveMeshing_example -bin/gsExpressions_test bin/gsHBox_example bin/gsInterpolateMap bin/gsMakeMultiPatch @@ -48,6 +49,7 @@ bin/quasiInterpolation_example bin/refitting_example bin/sparseSolvers_example bin/stokes_ieti_example +bin/surfaceReparametrization_example bin/thbRefinement_example bin/thbSplineBasis_example bin/triangulatedMeshToSolid_example @@ -55,7 +57,6 @@ bin/trilinos_example include/gismo/eiquadprog.hpp include/gismo/gdcpp.h include/gismo/gismo.h -include/gismo/gsAssembler/expr/precomputed_expr.h include/gismo/gsAssembler/gsAdaptiveMeshing.h include/gismo/gsAssembler/gsAdaptiveMeshingCompare.h include/gismo/gsAssembler/gsAdaptiveMeshingUtils.h @@ -69,8 +70,6 @@ include/gismo/gsAssembler/gsCPPInterface.h include/gismo/gsAssembler/gsDirichletValues.h include/gismo/gsAssembler/gsExprAssembler.h include/gismo/gsAssembler/gsExprEvaluator.h -include/gismo/gsAssembler/gsExprHelper.h -include/gismo/gsAssembler/gsExpressions.h include/gismo/gsAssembler/gsGaussRule.h include/gismo/gsAssembler/gsGenericAssembler.h include/gismo/gsAssembler/gsHeatEquation.h @@ -101,6 +100,9 @@ include/gismo/gsCore/gsBasisRefs.h include/gismo/gsCore/gsBoundary.h include/gismo/gsCore/gsBoxTopology.h include/gismo/gsCore/gsBulk.h +include/gismo/gsCore/gsComposedBasis.h +include/gismo/gsCore/gsComposedFunction.h +include/gismo/gsCore/gsComposedGeometry.h include/gismo/gsCore/gsConfig.h include/gismo/gsCore/gsConfigExt.h include/gismo/gsCore/gsConstantBasis.h @@ -108,8 +110,6 @@ include/gismo/gsCore/gsConstantFunction.h include/gismo/gsCore/gsCurve.h include/gismo/gsCore/gsDebug.h include/gismo/gsCore/gsDofMapper.h -include/gismo/gsCore/gsDomain.h -include/gismo/gsCore/gsDomainIterator.h include/gismo/gsCore/gsExport.h include/gismo/gsCore/gsField.h include/gismo/gsCore/gsFieldCreator.h @@ -137,6 +137,23 @@ include/gismo/gsCore/gsSurface.h include/gismo/gsCore/gsSysInfo.h include/gismo/gsCore/gsTemplateTools.h include/gismo/gsCore/gsVolume.h +include/gismo/gsDomain/gsBreaksIterator.h +include/gismo/gsDomain/gsCompositeDomain.h +include/gismo/gsDomain/gsDomain.h +include/gismo/gsDomain/gsDomainIterator.h +include/gismo/gsDomain/gsHDomain.h +include/gismo/gsDomain/gsHDomainBoundaryIterator.h +include/gismo/gsDomain/gsHDomainIterator.h +include/gismo/gsDomain/gsHDomainLeafIter.h +include/gismo/gsDomain/gsHDomainSliceIter.h +include/gismo/gsDomain/gsHTree.h +include/gismo/gsDomain/gsKdNode.h +include/gismo/gsDomain/gsKnotDomainIterator.h +include/gismo/gsDomain/gsPointDomain.h +include/gismo/gsDomain/gsPointDomainIterator.h +include/gismo/gsDomain/gsTensorDomain.h +include/gismo/gsDomain/gsTensorDomainBoundaryIterator.h +include/gismo/gsDomain/gsTensorDomainIterator.h include/gismo/gsEigen/Cholesky include/gismo/gsEigen/CholmodSupport include/gismo/gsEigen/Core @@ -474,21 +491,81 @@ include/gismo/gsEigen/src/plugins/IndexedViewMethods.h include/gismo/gsEigen/src/plugins/MatrixCwiseBinaryOps.h include/gismo/gsEigen/src/plugins/MatrixCwiseUnaryOps.h include/gismo/gsEigen/src/plugins/ReshapedMethods.h +include/gismo/gsExpressions/_expr.h +include/gismo/gsExpressions/_expr_macros.h +include/gismo/gsExpressions/abs_expr.h +include/gismo/gsExpressions/add_expr.h +include/gismo/gsExpressions/adjugate_expr.h +include/gismo/gsExpressions/asdiag_expr.h +include/gismo/gsExpressions/colBlocks_expr.h +include/gismo/gsExpressions/col_expr.h +include/gismo/gsExpressions/collapse_expr.h +include/gismo/gsExpressions/colsum_expr.h +include/gismo/gsExpressions/constMat_expr.h +include/gismo/gsExpressions/cross_expr.h +include/gismo/gsExpressions/curl_expr.h +include/gismo/gsExpressions/dJacG_expr.h +include/gismo/gsExpressions/dJacdc_expr.h +include/gismo/gsExpressions/diag_expr.h +include/gismo/gsExpressions/divide_expr.h +include/gismo/gsExpressions/example_expr.h +include/gismo/gsExpressions/exp_expr.h +include/gismo/gsExpressions/fform2nd_expr.h +include/gismo/gsExpressions/flat_expr.h +include/gismo/gsExpressions/frprod_expr.h +include/gismo/gsExpressions/grad_expr.h +include/gismo/gsExpressions/gsComposition.h +include/gismo/gsExpressions/gsExprHelper.h +include/gismo/gsExpressions/gsExpressions.h +include/gismo/gsExpressions/gsFeElement.h +include/gismo/gsExpressions/gsFeSolution.h +include/gismo/gsExpressions/gsFeSpace.h +include/gismo/gsExpressions/gsFeSpaceData.h +include/gismo/gsExpressions/gsFeVariable.h +include/gismo/gsExpressions/gsGeometryMap.h +include/gismo/gsExpressions/gsNullExpr.h +include/gismo/gsExpressions/gsVector_expr.h +include/gismo/gsExpressions/hess_expr.h +include/gismo/gsExpressions/idMat_expr.h +include/gismo/gsExpressions/integral_expr.h +include/gismo/gsExpressions/jacInv_expr.h +include/gismo/gsExpressions/jac_expr.h +include/gismo/gsExpressions/lapl_expr.h +include/gismo/gsExpressions/matrix_by_space_expr.h +include/gismo/gsExpressions/matrix_by_space_tr_expr.h +include/gismo/gsExpressions/max_expr.h +include/gismo/gsExpressions/meas_expr.h +include/gismo/gsExpressions/mult_expr.h +include/gismo/gsExpressions/nabla2_expr.h +include/gismo/gsExpressions/nabla_expr.h +include/gismo/gsExpressions/normal_expr.h +include/gismo/gsExpressions/onormal_expr.h +include/gismo/gsExpressions/pow_expr.h +include/gismo/gsExpressions/ppart_expr.h +include/gismo/gsExpressions/ppartval_expr.h +include/gismo/gsExpressions/precomputed_expr.h +include/gismo/gsExpressions/replicate_expr.h +include/gismo/gsExpressions/reshape_expr.h +include/gismo/gsExpressions/rowsum_expr.h +include/gismo/gsExpressions/sign_expr.h +include/gismo/gsExpressions/sub_expr.h +include/gismo/gsExpressions/summ_expr.h +include/gismo/gsExpressions/symbol_expr.h +include/gismo/gsExpressions/symm_expr.h +include/gismo/gsExpressions/symmetrize_expr.h +include/gismo/gsExpressions/tangent_expr.h +include/gismo/gsExpressions/temp_expr.h +include/gismo/gsExpressions/trace_expr.h +include/gismo/gsExpressions/transpose_expr.h +include/gismo/gsExpressions/value_expr.h +include/gismo/gsExpressions/voigt_expr.h include/gismo/gsHSplines/gsAABB.h include/gismo/gsHSplines/gsAAPolyline.h -include/gismo/gsHSplines/gsHBSpline.h -include/gismo/gsHSplines/gsHBSplineBasis.h include/gismo/gsHSplines/gsHBox.h include/gismo/gsHSplines/gsHBoxContainer.h include/gismo/gsHSplines/gsHBoxUtils.h -include/gismo/gsHSplines/gsHDomain.h -include/gismo/gsHSplines/gsHDomainBoundaryIterator.h -include/gismo/gsHSplines/gsHDomainIterator.h -include/gismo/gsHSplines/gsHDomainLeafIter.h -include/gismo/gsHSplines/gsHDomainSliceIter.h include/gismo/gsHSplines/gsHFitting.h include/gismo/gsHSplines/gsHTensorBasis.h -include/gismo/gsHSplines/gsKdNode.h include/gismo/gsHSplines/gsRationalTHBSpline.h include/gismo/gsHSplines/gsRationalTHBSplineBasis.h include/gismo/gsHSplines/gsTHBSpline.h @@ -500,8 +577,8 @@ include/gismo/gsIO/gsCsv.h include/gismo/gsIO/gsFileData.h include/gismo/gsIO/gsFileManager.h include/gismo/gsIO/gsGoTools.h -include/gismo/gsIO/gsIOUtils.h include/gismo/gsIO/gsOptionList.h +include/gismo/gsIO/gsOptionListXml.h include/gismo/gsIO/gsParaviewCollection.h include/gismo/gsIO/gsParaviewDataSet.h include/gismo/gsIO/gsParaviewUtils.h @@ -559,6 +636,7 @@ include/gismo/gsModeling/gsSolidHalfEdge.h include/gismo/gsModeling/gsSolidHalfFace.h include/gismo/gsModeling/gsSolidHeVertex.h include/gismo/gsModeling/gsSpringPatch.h +include/gismo/gsModeling/gsSurfaceReparameterization.h include/gismo/gsModeling/gsTemplate.h include/gismo/gsModeling/gsTriMeshToSolid.h include/gismo/gsModeling/gsTrimSurface.h @@ -573,6 +651,7 @@ include/gismo/gsNurbs/gsBoehm.h include/gismo/gsNurbs/gsCurveCurveIntersection.h include/gismo/gsNurbs/gsKnotIterator.h include/gismo/gsNurbs/gsKnotVector.h +include/gismo/gsNurbs/gsMobiusMap.h include/gismo/gsNurbs/gsNurbs.h include/gismo/gsNurbs/gsNurbsBasis.h include/gismo/gsNurbs/gsNurbsCreator.h @@ -580,8 +659,6 @@ include/gismo/gsNurbs/gsTensorBSpline.h include/gismo/gsNurbs/gsTensorBSplineBasis.h include/gismo/gsNurbs/gsTensorNurbs.h include/gismo/gsNurbs/gsTensorNurbsBasis.h -include/gismo/gsOpennurbs/gsReadOpenNurbs.h -include/gismo/gsOpennurbs/gsWriteOpenNurbs.h include/gismo/gsOptimizer/gsFunctionAdaptor.h include/gismo/gsOptimizer/gsGradientDescent.h include/gismo/gsOptimizer/gsLevenbergMarquardt.h @@ -626,13 +703,10 @@ include/gismo/gsSolver/gsSumOp.h include/gismo/gsTensor/gsGenericTensorBasis.h include/gismo/gsTensor/gsGridIterator.h include/gismo/gsTensor/gsTensorBasis.h -include/gismo/gsTensor/gsTensorDomainBoundaryIterator.h -include/gismo/gsTensor/gsTensorDomainIterator.h include/gismo/gsTensor/gsTensorTools.h include/gismo/gsUtils/gsBoundedPriorityQueue.h include/gismo/gsUtils/gsCombinatorics.h include/gismo/gsUtils/gsFunctionWithDerivatives.h -include/gismo/gsUtils/gsKDTree.h include/gismo/gsUtils/gsL2Projection.h include/gismo/gsUtils/gsMesh/gsBoundingBox.h include/gismo/gsUtils/gsMesh/gsCell.h @@ -711,7 +785,7 @@ lib/gismo/ofa/cpuinfo_x86.cxx lib/libgismo.a lib/libgismo.so lib/libgismo.so.25 -lib/libgismo.so.25.1.0 +lib/libgismo.so.25.7.0 libdata/pkgconfig/gismo.pc %%DATADIR%%data/breps/2D/duck_BRep.xml %%DATADIR%%data/breps/3D/duck_BRep.xml @@ -763,6 +837,8 @@ libdata/pkgconfig/gismo.pc %%DATADIR%%data/pde/poisson2d_bvp_bin.xml %%DATADIR%%data/pde/poisson2d_sin.xml %%DATADIR%%data/pde/poisson3d_sin.xml +%%DATADIR%%data/pde/surfacepoisson_sphere_bvp.xml +%%DATADIR%%data/pde/surfacepoisson_torus_bvp.xml %%DATADIR%%data/planar/hexagon_3p.xml %%DATADIR%%data/planar/hexagon_5p.xml %%DATADIR%%data/planar/lshape2d_3patches_tens.xml @@ -778,6 +854,7 @@ libdata/pkgconfig/gismo.pc %%DATADIR%%data/stl/patchLisa.stl %%DATADIR%%data/stl/patchLisa_1.stl %%DATADIR%%data/surfaces/car.xml +%%DATADIR%%data/surfaces/crazySurf.xml %%DATADIR%%data/surfaces/cylinder.xml %%DATADIR%%data/surfaces/egg.xml %%DATADIR%%data/surfaces/g_plus_s_surf.xml @@ -788,6 +865,11 @@ libdata/pkgconfig/gismo.pc %%DATADIR%%data/surfaces/thbs_face_3levels.xml %%DATADIR%%data/thbbasis/simple.xml %%DATADIR%%data/thbbasis/thbs_basis_02.xml +%%DATADIR%%data/unittests/gsComposedBasis.xml +%%DATADIR%%data/unittests/gsComposedFunction.xml +%%DATADIR%%data/unittests/gsComposedGeometry.xml +%%DATADIR%%data/unittests/gsConstantFunction.xml +%%DATADIR%%data/unittests/gsFunctionExpr.xml %%DATADIR%%data/unittests/matrix.xml %%DATADIR%%data/volumes/GshapedVolume.xml %%DATADIR%%data/volumes/cube.xml diff --git a/math/py-igraph/Makefile b/math/py-igraph/Makefile index ba22555e9a9c..59e9aed6bfd8 100644 --- a/math/py-igraph/Makefile +++ b/math/py-igraph/Makefile @@ -1,6 +1,5 @@ PORTNAME= igraph -DISTVERSION= 0.10.6 -PORTREVISION= 6 +DISTVERSION= 0.11.9 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,17 +11,13 @@ WWW= https://igraph.org/python/ LICENSE= GPLv2 -BROKEN= Fails to build with libxml2 2.13+, error: incompatible function pointer types passing 'void (*)(void *, xmlErrorPtr)' (aka 'void (*)(void *, struct _xmlError *)') to parameter of type 'xmlStructuredErrorFunc' (aka 'void (*)(void *, const struct _xmlError *)') - BUILD_DEPENDS= cmake:devel/cmake-core \ ${LOCALBASE}/bin/flex:textproc/flex -LIB_DEPENDS= libigraph.so:math/igraph \ - libarpack.so:math/arpack-ng \ +LIB_DEPENDS= libarpack.so:math/arpack-ng \ libblas.so:math/blas \ libglpk.so:math/glpk \ libgmp.so:math/gmp \ - liblapack.so:math/lapack \ - libopenblas.so:math/openblas + liblapack.so:math/lapack RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}texttable>=1.6.2:textproc/py-texttable@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}cairocffi>0:graphics/py-cairocffi@${PY_FLAVOR} TEST_DEPENDS= py.test:devel/py-pytest@${PY_FLAVOR} diff --git a/math/py-igraph/distinfo b/math/py-igraph/distinfo index 92d43956c400..3b9f5d95b2c0 100644 --- a/math/py-igraph/distinfo +++ b/math/py-igraph/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1692030616 -SHA256 (python-igraph/igraph-0.10.6.tar.gz) = 76f7aad294514412f835366a7d9a9c1e7a34c3e6ef0a6c3a1a835234323228e8 -SIZE (python-igraph/igraph-0.10.6.tar.gz) = 4233333 +TIMESTAMP = 1752616078 +SHA256 (python-igraph/igraph-0.11.9.tar.gz) = c57ce44873abcfcfd1d61d7d261e416d352186958e7b5d299cf244efa6757816 +SIZE (python-igraph/igraph-0.11.9.tar.gz) = 4587322 diff --git a/math/py-igraph/files/patch-setup.py b/math/py-igraph/files/patch-setup.py index c45c6da41642..24e3ea45c0df 100644 --- a/math/py-igraph/files/patch-setup.py +++ b/math/py-igraph/files/patch-setup.py @@ -1,24 +1,26 @@ ---- setup.py.orig 2023-07-13 11:49:16 UTC +--- setup.py.orig 2025-06-11 00:02:53 UTC +++ setup.py -@@ -281,7 +281,7 @@ class IgraphCCoreCMakeBuilder: +@@ -280,8 +280,8 @@ class IgraphCCoreCMakeBuilder: + args.append("-DIGRAPH_GRAPHML_SUPPORT:BOOL=OFF") # Build the Python interface with vendored libraries - for deps in "ARPACK BLAS GLPK GMP LAPACK".split(): +- for deps in "ARPACK BLAS GLPK GMP LAPACK PLFIT".split(): - args.append("-DIGRAPH_USE_INTERNAL_" + deps + "=ON") ++ for deps in "ARPACK BLAS GLPK GMP LAPACK".split(): + args.append("-DIGRAPH_USE_INTERNAL_" + deps + "=OFF") - # -fPIC is needed on Linux so we can link to a static igraph lib from a - # Python shared library -@@ -289,6 +289,12 @@ class IgraphCCoreCMakeBuilder: - + # Use link-time optinization if available + args.append("-DIGRAPH_ENABLE_LTO=AUTO") +@@ -293,6 +293,12 @@ class IgraphCCoreCMakeBuilder: # No need to build tests args.append("-DBUILD_TESTING=OFF") -+ + + # Always use flex from ports + args.append("-DFLEX_EXECUTABLE:FILEPATH=%%LOCALBASE%%/bin/flex") + + # Don't try to use git + args.append("-DCMAKE_DISABLE_FIND_PACKAGE_Git:BOOL=True") - ++ # Do not treat compilation warnings as errors in case someone is trying # to "pip install" igraph in an environment for which we don't provide + # wheels and the compiler complains about harmless things diff --git a/math/py-igraph/files/patch-vendor_source_igraph_etc_cmake_compilers.cmake b/math/py-igraph/files/patch-vendor_source_igraph_etc_cmake_compilers.cmake new file mode 100644 index 000000000000..c0f153b37fa3 --- /dev/null +++ b/math/py-igraph/files/patch-vendor_source_igraph_etc_cmake_compilers.cmake @@ -0,0 +1,19 @@ +Strip the _POSIX_C_SOURCE=200809L define again, our libc++ breaks claiming +that a set included from locale cannot find isascii()... + +--- vendor/source/igraph/etc/cmake/compilers.cmake.orig 2025-06-11 00:03:00 UTC ++++ vendor/source/igraph/etc/cmake/compilers.cmake +@@ -1,13 +1,5 @@ include(CheckCCompilerFlag) + include(CheckCCompilerFlag) + +-# Enable POSIX features. This needs to be set here instead of in source files so +-# that it affects CMake-based feature tests. +-# +-# See: +-# - https://pubs.opengroup.org/onlinepubs/007904875/functions/xsh_chap02_02.html +-# - https://www.gnu.org/software/libc/manual/html_node/Feature-Test-Macros.html +-add_compile_definitions(_POSIX_C_SOURCE=200809L) +- + if(MSVC) + add_compile_options(/FS) + add_compile_definitions(_CRT_SECURE_NO_WARNINGS) # necessary to compile for UWP diff --git a/math/scilab/Makefile b/math/scilab/Makefile index 5ddb6ca33416..eed99f22294e 100644 --- a/math/scilab/Makefile +++ b/math/scilab/Makefile @@ -1,6 +1,6 @@ PORTNAME= scilab DISTVERSION= 6.1.1 -PORTREVISION= 22 +PORTREVISION= 23 CATEGORIES= math cad java MASTER_SITES= https://www.scilab.org/download/${DISTVERSION}/ DISTFILES= ${DISTNAME}-src${EXTRACT_SUFX} @@ -14,8 +14,6 @@ LICENSE_COMB= dual LICENSE_FILE_GPLv2= ${WRKSRC}/COPYING LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/COPYING-BSD -BROKEN= Fails to build, configure: error: Could not find or use the Java package/jar saxon used by Saxon XSLT Processor (looking for package com.icl.saxon.Loader) - LIB_DEPENDS= libpcre.so:devel/pcre \ libcurl.so:ftp/curl \ libhdf5.so:science/hdf5 \ @@ -86,7 +84,7 @@ _GUI_DEPENDS+= ${JAVALIBDIR}/commons-beanutils.jar:java/apache-commons-beanutils ${LOCALBASE}/bin/splint:devel/splint # Documentation building: _GUI_DEPENDS+= ${LOCALBASE}/share/xsl/docbook/javahelp/javahelp.xsl:textproc/docbook-xsl \ - ${JAVALIBDIR}/saxon-he-12.6.jar:textproc/saxon-he \ + saxon-he>=12.8:textproc/saxon-he \ ${_JAVADIR}/xml-commons/xml-apis-ext.jar:textproc/xml-commons \ xsltproc:textproc/libxslt # Other gui deps: @@ -148,6 +146,7 @@ FFLAGS+= -fallow-argument-mismatch post-patch: @${REINPLACE_CMD} 's,/usr/local,${LOCALBASE},' ${WRKSRC}/etc/librarypath.xml @${REINPLACE_CMD} -e 's, gfortran, ${FC},' ${WRKSRC}/modules/dynamic_link/src/scripts/configure + @${REINPLACE_CMD} -e 's,valgrind,X_X_NONEXIST_X_X,' ${WRKSRC}/configure .if ${COMPILER_TYPE} == clang @${REINPLACE_CMD} -e 's|std::filesystem|std::__fs::filesystem|g' \ ${WRKSRC}/modules/fileio/src/cpp/fullpath.cpp \ diff --git a/math/scilab/files/patch-libxml2.13 b/math/scilab/files/patch-libxml2.13 new file mode 100644 index 000000000000..d304ca60c5df --- /dev/null +++ b/math/scilab/files/patch-libxml2.13 @@ -0,0 +1,41 @@ +diff -up modules/scicos/src/cpp/XMIResource_load.cpp.orig modules/scicos/src/cpp/XMIResource_load.cpp +--- modules/scicos/src/cpp/XMIResource_load.cpp.orig 2021-07-15 13:55:14.000000000 +0200 ++++ modules/scicos/src/cpp/XMIResource_load.cpp 2025-07-14 14:43:30.773655000 +0200 +@@ -56,11 +56,11 @@ struct LibXML2State + LibXML2State() + { + xmlGenericErrorFunc f = &console_print; +- initGenericErrorDefaultFunc(&f); ++ xmlSetGenericErrorFunc(nullptr, f); + } + ~LibXML2State() + { +- initGenericErrorDefaultFunc(nullptr); ++ xmlSetGenericErrorFunc(nullptr, nullptr); + } + }; + +diff -up modules/xml/src/cpp/XMLDocument.cpp.orig modules/xml/src/cpp/XMLDocument.cpp +--- modules/xml/src/cpp/XMLDocument.cpp.orig 2021-07-15 13:55:21.000000000 +0200 ++++ modules/xml/src/cpp/XMLDocument.cpp 2025-07-14 14:31:16.844487000 +0200 +@@ -520,7 +520,7 @@ void XMLDocument::errorFunction(void *ctx, const char + errorBuffer.append(str); + } + +-void XMLDocument::errorXPathFunction(void *ctx, xmlError * error) ++void XMLDocument::errorXPathFunction(void *ctx, const xmlError * error) + { + errorXPathBuffer.append(error->message); + } +diff -up modules/xml/src/cpp/XMLDocument.hxx.orig modules/xml/src/cpp/XMLDocument.hxx +--- modules/xml/src/cpp/XMLDocument.hxx.orig 2021-07-15 13:55:21.000000000 +0200 ++++ modules/xml/src/cpp/XMLDocument.hxx 2025-07-14 14:31:29.264578000 +0200 +@@ -175,7 +175,7 @@ class XML_SCILAB_IMPEXP XMLDocument: public XMLObject + * Error function used when the XPath query is compiled/ + * @see http://xmlsoft.org/html/libxml-xmlerror.html#xmlStructuredErrorFunc + */ +- static void errorXPathFunction(void *ctx, xmlError * error); ++ static void errorXPathFunction(void *ctx, const xmlError * error); + + /** + * Reads and parses a document given in a file. |