diff options
Diffstat (limited to 'math')
49 files changed, 123 insertions, 140 deletions
diff --git a/math/4ti2/Makefile b/math/4ti2/Makefile index 1de8b4ef38c4..a80b86a0c114 100644 --- a/math/4ti2/Makefile +++ b/math/4ti2/Makefile @@ -1,6 +1,6 @@ PORTNAME= 4ti2 DISTVERSIONPREFIX= Release_ -DISTVERSION= 1_6_10 +DISTVERSION= 1_6_13 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -13,10 +13,12 @@ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libglpk.so:math/glpk \ libgmp.so:math/gmp -USES= autoreconf compiler:c++11-lang gmake libtool +USES= autoreconf compiler:c++11-lang gmake libtool shebangfix USE_GITHUB= yes USE_LDCONFIG= yes +SHEBANG_FILES= test/check.template.in + GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-static --enable-shared --with-glpk=${LOCALBASE} --with-gmp=${LOCALBASE} diff --git a/math/4ti2/distinfo b/math/4ti2/distinfo index c5266ed4badb..1d0872a1335c 100644 --- a/math/4ti2/distinfo +++ b/math/4ti2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1682583538 -SHA256 (4ti2-4ti2-Release_1_6_10_GH0.tar.gz) = 2f1bce3203da65b651d68cbd0ace0f89a16d1f436cf5f24e22bc15ec22df936a -SIZE (4ti2-4ti2-Release_1_6_10_GH0.tar.gz) = 5005427 +TIMESTAMP = 1753038439 +SHA256 (4ti2-4ti2-Release_1_6_13_GH0.tar.gz) = 37b36536f0b9185afa8e0c9badf6a6b5277b7a4a8409726d599cf254946e94fa +SIZE (4ti2-4ti2-Release_1_6_13_GH0.tar.gz) = 4991075 diff --git a/math/R-cran-DEoptimR/Makefile b/math/R-cran-DEoptimR/Makefile index 031e4730b63a..b364f03db52c 100644 --- a/math/R-cran-DEoptimR/Makefile +++ b/math/R-cran-DEoptimR/Makefile @@ -1,11 +1,11 @@ PORTNAME= DEoptimR -DISTVERSION= 1.1-3-1 +DISTVERSION= 1.1-4 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} MAINTAINER= eduardo@FreeBSD.org COMMENT= Differential Evolution Optimization in Pure R -WWW= https://cran.r-project.org/web/packages/DEoptimR/ +WWW= https://cran.r-project.org/package=DEoptimR LICENSE= GPLv2+ diff --git a/math/R-cran-DEoptimR/distinfo b/math/R-cran-DEoptimR/distinfo index e12c6b710ac0..2df1c48dd2ad 100644 --- a/math/R-cran-DEoptimR/distinfo +++ b/math/R-cran-DEoptimR/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1735919317 -SHA256 (DEoptimR_1.1-3-1.tar.gz) = 586b7342bd8692314b0870369caf03c26f4e94fef39677dbaa2c5acc9ec072a2 -SIZE (DEoptimR_1.1-3-1.tar.gz) = 19536 +TIMESTAMP = 1753716629 +SHA256 (DEoptimR_1.1-4.tar.gz) = 5a1bdd10d6f75e77e91bed0568e7be9f08dd2996a0b2ca2b3c80a71626e602a2 +SIZE (DEoptimR_1.1-4.tar.gz) = 19586 diff --git a/math/R-cran-Rmpfr/Makefile b/math/R-cran-Rmpfr/Makefile index c309b1ac5faa..3d91c007db9d 100644 --- a/math/R-cran-Rmpfr/Makefile +++ b/math/R-cran-Rmpfr/Makefile @@ -1,5 +1,5 @@ PORTNAME= Rmpfr -DISTVERSION= 1.1-0 +DISTVERSION= 1.1-1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-Rmpfr/distinfo b/math/R-cran-Rmpfr/distinfo index 9dcf4ed25f35..daea6428910d 100644 --- a/math/R-cran-Rmpfr/distinfo +++ b/math/R-cran-Rmpfr/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1747455080 -SHA256 (Rmpfr_1.1-0.tar.gz) = ae3e148dc7f003960a81fd4f2b8285c8f8b951be3f34fc2779dfca20b1af141f -SIZE (Rmpfr_1.1-0.tar.gz) = 618436 +TIMESTAMP = 1753008029 +SHA256 (Rmpfr_1.1-1.tar.gz) = 1f67af9baba9e9939db9757783b90caa6054035a0d27bbd07c8403b250294bd2 +SIZE (Rmpfr_1.1-1.tar.gz) = 655307 diff --git a/math/R-cran-pbkrtest/Makefile b/math/R-cran-pbkrtest/Makefile index 4c5ee41dd81b..3d1536c57692 100644 --- a/math/R-cran-pbkrtest/Makefile +++ b/math/R-cran-pbkrtest/Makefile @@ -1,5 +1,5 @@ PORTNAME= pbkrtest -DISTVERSION= 0.5.4 +DISTVERSION= 0.5.5 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-pbkrtest/distinfo b/math/R-cran-pbkrtest/distinfo index 72889b767954..30927bfa2864 100644 --- a/math/R-cran-pbkrtest/distinfo +++ b/math/R-cran-pbkrtest/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1746004088 -SHA256 (pbkrtest_0.5.4.tar.gz) = cd463ff5766c340f576366e45e7a44498e3017083df9c02f332510f8a423d822 -SIZE (pbkrtest_0.5.4.tar.gz) = 75868 +TIMESTAMP = 1753012743 +SHA256 (pbkrtest_0.5.5.tar.gz) = d26c8ef0a6fd73bba184bde8e3434439d62539d93aef0a0b5b480a0f309bc51b +SIZE (pbkrtest_0.5.5.tar.gz) = 77353 diff --git a/math/R-cran-terra/Makefile b/math/R-cran-terra/Makefile index ba6e77decc65..6cf421ca8011 100644 --- a/math/R-cran-terra/Makefile +++ b/math/R-cran-terra/Makefile @@ -1,5 +1,5 @@ PORTNAME= terra -DISTVERSION= 1.8-54 +DISTVERSION= 1.8-60 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-terra/distinfo b/math/R-cran-terra/distinfo index 111d619ec6fc..a2ff24f11e8e 100644 --- a/math/R-cran-terra/distinfo +++ b/math/R-cran-terra/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1748855908 -SHA256 (terra_1.8-54.tar.gz) = 3d43dafa6dd7bf8cb52cb63e740eb418fc35c7cb01731f0a637d6ee85999138c -SIZE (terra_1.8-54.tar.gz) = 1045074 +TIMESTAMP = 1753717458 +SHA256 (terra_1.8-60.tar.gz) = de8ea8bb116b668146dba8668209864f992117a8e2b7e3b109502f545bce8c23 +SIZE (terra_1.8-60.tar.gz) = 1046067 diff --git a/math/R-cran-terra/files/patch-i386 b/math/R-cran-terra/files/patch-i386 deleted file mode 100644 index ba6c983cb12d..000000000000 --- a/math/R-cran-terra/files/patch-i386 +++ /dev/null @@ -1,45 +0,0 @@ -From 891bb07da1152988225d1f1cfac75aabfa40df62 Mon Sep 17 00:00:00 2001 -From: rhijmans <r.hijmans@gmail.com> -Date: Tue, 3 Jun 2025 07:51:14 -0700 -Subject: [PATCH] for #1846 - ---- - src/gdal_multidimensional.cpp | 10 ++++++++-- - 1 file changed, 8 insertions(+), 2 deletions(-) - -diff --git src/gdal_multidimensional.cpp src/gdal_multidimensional.cpp -index 7116212a9..42049f59a 100644 ---- src/gdal_multidimensional.cpp -+++ src/gdal_multidimensional.cpp -@@ -9,6 +9,11 @@ - #include "file_utils.h" - #include "vecmath.h" - -+#if defined(_WIN64) || defined(__x86_64__) || defined(__ppc64__) || defined(__aarch64__) || defined(__MINGW64__) || defined(__amd64__) -+ #define IS_64_BIT -+#endif -+ -+ - bool parse_ncdf_time(SpatRasterSource &s, const std::string unit, const std::string calendar, std::vector<double> raw, std::string &msg) { - - std::vector<int_64> out; -@@ -179,7 +184,7 @@ bool parse_ncdf_time(SpatRasterSource &s, const std::string unit, const std::str - - - --#if GDAL_VERSION_MAJOR >= 3 && GDAL_VERSION_MINOR >= 4 -+#if GDAL_VERSION_MAJOR >= 3 && GDAL_VERSION_MINOR >= 4 && defined(IS_64_BIT) - - - std::vector<std::string> GetArrayNames(std::shared_ptr<GDALGroup> x, bool filter) { -@@ -804,8 +809,9 @@ bool SpatRaster::writeStopMulti() { - #else - - -+ - bool SpatRaster::constructFromFileMulti(std::string fname, std::vector<int> subds, std::vector<std::string> subname, std::vector<std::string> drivers, std::vector<std::string> options, std::vector<int> dims, bool noflip, bool guessCRS, std::vector<std::string> domains) { -- setError("multidim is not supported with GDAL < 3.4"); -+ setError("multidim is not supported with GDAL < 3.4 or on 32 bit systems"); - return false; - } - diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile index 38d611477039..17eb1f689968 100644 --- a/math/armadillo/Makefile +++ b/math/armadillo/Makefile @@ -1,5 +1,5 @@ PORTNAME= armadillo -PORTVERSION= 14.6.0 +PORTVERSION= 14.6.1 CATEGORIES= math MASTER_SITES= SF/arma diff --git a/math/armadillo/distinfo b/math/armadillo/distinfo index f2d240074241..7235cfc3f1f3 100644 --- a/math/armadillo/distinfo +++ b/math/armadillo/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752266016 -SHA256 (armadillo-14.6.0.tar.xz) = d18ccdb78a5da88f18fc529d8a8d40fad455842be6b01c59796f47a6f5bc7fe5 -SIZE (armadillo-14.6.0.tar.xz) = 7159176 +TIMESTAMP = 1753265704 +SHA256 (armadillo-14.6.1.tar.xz) = bec67f368fc61673c4c9e9429d20135a42ba80a2c7f8592b912e5f97e289bfc0 +SIZE (armadillo-14.6.1.tar.xz) = 7159088 diff --git a/math/libRmath/Makefile b/math/libRmath/Makefile index 738505b84176..f5503790e57f 100644 --- a/math/libRmath/Makefile +++ b/math/libRmath/Makefile @@ -1,10 +1,10 @@ PORTNAME= libRmath -DISTVERSION= 4.4.3 +DISTVERSION= 4.5.1 CATEGORIES= math lang MASTER_SITES= CRAN/src/base/R-${DISTVERSION:C|\..*||} DISTNAME= R-${DISTVERSIONPREFIX}${DISTVERSION}${DISTVERSIONSUFFIX} -MAINTAINER= alster@vinterdalen.se +MAINTAINER= alven@FreeBSD.org COMMENT= Standalone math library from R WWW= https://www.R-project.org/ diff --git a/math/libRmath/distinfo b/math/libRmath/distinfo index 90cc1ab5a849..b830a3e2ed3f 100644 --- a/math/libRmath/distinfo +++ b/math/libRmath/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1741214828 -SHA256 (R-4.4.3.tar.gz) = 0d93d224442dea253c2b086f088db6d0d3cfd9b592cd5496e8cb2143e90fc9e8 -SIZE (R-4.4.3.tar.gz) = 40234425 +TIMESTAMP = 1753570849 +SHA256 (R-4.5.1.tar.gz) = b42a7921400386645b10105b91c68728787db5c4c83c9f6c30acdce632e1bb70 +SIZE (R-4.5.1.tar.gz) = 40518816 diff --git a/math/maxima/Makefile b/math/maxima/Makefile index 420415b60368..929f311b5873 100644 --- a/math/maxima/Makefile +++ b/math/maxima/Makefile @@ -1,6 +1,6 @@ PORTNAME= maxima DISTVERSION= 5.47.0 -PORTREVISION= 26 +PORTREVISION= 27 CATEGORIES= math lisp tk MASTER_SITES= SF/maxima/Maxima-source/${PORTVERSION}-source diff --git a/math/mdal/Makefile b/math/mdal/Makefile index f7816901df5a..1ef54c326153 100644 --- a/math/mdal/Makefile +++ b/math/mdal/Makefile @@ -14,12 +14,11 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${LOCALBASE}/include/gtest/gtest.h:devel/googletest LIB_DEPENDS= libpdalcpp.so:math/pdal \ libnetcdf.so:science/netcdf \ - libsqlite3.so:databases/sqlite3 \ libgdal.so:graphics/gdal \ libhdf5.so:science/hdf5 \ libsz.so:science/libaec -USES= cmake gnome localbase +USES= cmake gnome localbase sqlite USE_GNOME= libxml2 USE_LDCONFIG= yes diff --git a/math/mumps/Makefile b/math/mumps/Makefile index b29eafb76216..cbc3ca9987b3 100644 --- a/math/mumps/Makefile +++ b/math/mumps/Makefile @@ -6,7 +6,7 @@ PKGNAMESUFFIX= -edf MAINTAINER= thierry@FreeBSD.org COMMENT= MUltifrontal Massively Parallel sparse direct Solver for Code_Aster -WWW= https://graal.ens-lyon.fr/MUMPS/ +WWW= https://mumps-solver.org/ LICENSE= CeCILL_C LICENSE_NAME= CeCILL-C diff --git a/math/mumps4/Makefile b/math/mumps4/Makefile index 987e16064327..72ab350a3fbf 100644 --- a/math/mumps4/Makefile +++ b/math/mumps4/Makefile @@ -10,7 +10,7 @@ DISTNAME= MUMPS_${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= MUltifrontal Massively Parallel sparse direct Solver -WWW= https://graal.ens-lyon.fr/MUMPS/ +WWW= https://mumps-solver.org/ LICENSE= PD LICENSE_FILE= ${WRKSRC}/LICENSE diff --git a/math/octave-forge-csg-toolkit/Makefile b/math/octave-forge-csg-toolkit/Makefile index c7283d0ebe64..153a5a1adca7 100644 --- a/math/octave-forge-csg-toolkit/Makefile +++ b/math/octave-forge-csg-toolkit/Makefile @@ -1,6 +1,6 @@ PORTNAME= octave-forge-csg-toolkit DISTVERSIONPREFIX= v -DISTVERSION= 1.4.2 +DISTVERSION= 1.4.3 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org @@ -18,8 +18,6 @@ USE_GITHUB= yes GH_ACCOUNT= pr0m1th3as GH_PROJECT= ${OCTAVE_PKGNAME} -CXXFLAGS+= -stdlib=libstdc++ - OCTAVE_SRC= ${GH_PROJECT}-${DISTVERSION} .include <bsd.port.mk> diff --git a/math/octave-forge-csg-toolkit/distinfo b/math/octave-forge-csg-toolkit/distinfo index 57757322355b..5e2b2beb5f84 100644 --- a/math/octave-forge-csg-toolkit/distinfo +++ b/math/octave-forge-csg-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1747750196 -SHA256 (octave-forge/pr0m1th3as-csg-toolkit-v1.4.2_GH0.tar.gz) = 56fabd89edb550166aaeb7322b678721ad33864fe60b9e8602f596c91207e3b9 -SIZE (octave-forge/pr0m1th3as-csg-toolkit-v1.4.2_GH0.tar.gz) = 2159689 +TIMESTAMP = 1752819931 +SHA256 (octave-forge/pr0m1th3as-csg-toolkit-v1.4.3_GH0.tar.gz) = cc65e5d6b14f6678739f59119a726dbe0545da8ee662052f6adb3a02ad72ca44 +SIZE (octave-forge/pr0m1th3as-csg-toolkit-v1.4.3_GH0.tar.gz) = 2182368 diff --git a/math/octave-forge-datatypes/Makefile b/math/octave-forge-datatypes/Makefile index ef3bd1633c2d..88680220a89d 100644 --- a/math/octave-forge-datatypes/Makefile +++ b/math/octave-forge-datatypes/Makefile @@ -1,6 +1,6 @@ PORTNAME= octave-forge-datatypes DISTVERSIONPREFIX= release- -DISTVERSION= 1.0.5 +DISTVERSION= 1.0.7 PORTEPOCH= 1 CATEGORIES= math diff --git a/math/octave-forge-datatypes/distinfo b/math/octave-forge-datatypes/distinfo index b1a7004723b1..9bf754b94c55 100644 --- a/math/octave-forge-datatypes/distinfo +++ b/math/octave-forge-datatypes/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752697858 -SHA256 (octave-forge/pr0m1th3as-datatypes-release-1.0.5_GH0.tar.gz) = 8224849361e2d758dd97a028c5dd2de3f84e70915b47741a9f27993d90ada3a3 -SIZE (octave-forge/pr0m1th3as-datatypes-release-1.0.5_GH0.tar.gz) = 290834 +TIMESTAMP = 1753473679 +SHA256 (octave-forge/pr0m1th3as-datatypes-release-1.0.7_GH0.tar.gz) = b9c60ef0c51b4aff2f032d385d7d6797ee948e5ff29e934b178952f97b83d113 +SIZE (octave-forge/pr0m1th3as-datatypes-release-1.0.7_GH0.tar.gz) = 300497 diff --git a/math/octave-forge-geometry/Makefile b/math/octave-forge-geometry/Makefile index 9933cf303500..abdc8e77b362 100644 --- a/math/octave-forge-geometry/Makefile +++ b/math/octave-forge-geometry/Makefile @@ -1,6 +1,6 @@ PORTNAME= octave-forge-geometry PORTVERSION= 4.1.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= SF/octave/Octave%20Forge%20Packages/Individual%20Package%20Releases DISTNAME= ${OCTAVE_PKGNAME}-${DISTVERSIONFULL} @@ -12,7 +12,7 @@ WWW= https://packages.octave.org/ LICENSE= GPLv3 LICENSE_FILE= ${WRKDIR}/${OCTAVE_SRC}/COPYING -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml5>=0:devel/py-lxml5@${PY_FLAVOR} \ ${OCTAVE_TARBALLS_DIR}/matgeom.tar.gz:math/octave-forge-matgeom USES= octave python:env diff --git a/math/octave-forge-pkg-octave-doc/Makefile b/math/octave-forge-pkg-octave-doc/Makefile index 664d312467f7..e35fc9f8e892 100644 --- a/math/octave-forge-pkg-octave-doc/Makefile +++ b/math/octave-forge-pkg-octave-doc/Makefile @@ -1,6 +1,6 @@ PORTNAME= octave-forge-pkg-octave-doc DISTVERSIONPREFIX= release- -DISTVERSION= 0.6.1 +DISTVERSION= 0.6.3 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org diff --git a/math/octave-forge-pkg-octave-doc/distinfo b/math/octave-forge-pkg-octave-doc/distinfo index e906fb163a4f..daa141250b7b 100644 --- a/math/octave-forge-pkg-octave-doc/distinfo +++ b/math/octave-forge-pkg-octave-doc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751474732 -SHA256 (octave-forge/gnu-octave-pkg-octave-doc-release-0.6.1_GH0.tar.gz) = 832118658041d0fcd0662a57aaea201c4e857bba20993a67add9b638054e2445 -SIZE (octave-forge/gnu-octave-pkg-octave-doc-release-0.6.1_GH0.tar.gz) = 160024 +TIMESTAMP = 1753397681 +SHA256 (octave-forge/gnu-octave-pkg-octave-doc-release-0.6.3_GH0.tar.gz) = 5d3a949604b98fbf62b2c561e3522caf35105a8816d140295e6ae8b2a53b244c +SIZE (octave-forge/gnu-octave-pkg-octave-doc-release-0.6.3_GH0.tar.gz) = 160907 diff --git a/math/octave-forge-statistics/Makefile b/math/octave-forge-statistics/Makefile index 83e5727925d2..3f809a9e270c 100644 --- a/math/octave-forge-statistics/Makefile +++ b/math/octave-forge-statistics/Makefile @@ -1,6 +1,6 @@ PORTNAME= octave-forge-statistics DISTVERSIONPREFIX= release- -DISTVERSION= 1.7.4 +DISTVERSION= 1.7.5 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org diff --git a/math/octave-forge-statistics/distinfo b/math/octave-forge-statistics/distinfo index 4e4a04d382a2..47feb5b9bbe0 100644 --- a/math/octave-forge-statistics/distinfo +++ b/math/octave-forge-statistics/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1744659265 -SHA256 (octave-forge/gnu-octave-statistics-release-1.7.4_GH0.tar.gz) = 7fdea950102b1cbf008f0e90b3780bab53a9c70dc447113ddd8d7f9431cf1035 -SIZE (octave-forge/gnu-octave-statistics-release-1.7.4_GH0.tar.gz) = 1307223 +TIMESTAMP = 1753229115 +SHA256 (octave-forge/gnu-octave-statistics-release-1.7.5_GH0.tar.gz) = 5202b7ddf35014577f4d9ddfd11109789dae29f1febaeab1e19d16cdb7d9753c +SIZE (octave-forge/gnu-octave-statistics-release-1.7.5_GH0.tar.gz) = 1349843 diff --git a/math/p5-Math-Pari/Makefile b/math/p5-Math-Pari/Makefile index ea6d64f7e86a..333a0f4f2612 100644 --- a/math/p5-Math-Pari/Makefile +++ b/math/p5-Math-Pari/Makefile @@ -70,4 +70,10 @@ post-install: ${INSTALL_LIB} ${PARI_WRKSRC}/build/libpari-gmp.so.2.3.5 ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/Pari ${LN} -s libpari-gmp.so.2.3.5 ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/Pari/libpari-gmp.so.2 -.include <bsd.port.mk> +.include <bsd.port.pre.mk> + +.if ${PERL_LEVEL} >= 504200 +BROKEN= fails to build +.endif + +.include <bsd.port.post.mk> diff --git a/math/p5-Statistics-CaseResampling/Makefile b/math/p5-Statistics-CaseResampling/Makefile index 7c23e615a627..045e9ffa6319 100644 --- a/math/p5-Statistics-CaseResampling/Makefile +++ b/math/p5-Statistics-CaseResampling/Makefile @@ -1,5 +1,5 @@ PORTNAME= Statistics-CaseResampling -PORTVERSION= 0.16 +PORTVERSION= 0.17 CATEGORIES= math perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- diff --git a/math/p5-Statistics-CaseResampling/distinfo b/math/p5-Statistics-CaseResampling/distinfo index c6818cb1c083..cd5167e201c4 100644 --- a/math/p5-Statistics-CaseResampling/distinfo +++ b/math/p5-Statistics-CaseResampling/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1748495735 -SHA256 (Statistics-CaseResampling-0.16.tar.gz) = 91357d42b6bf266e5f378365020953753a9bbf9b99f96c4b9ab25376a54a5b94 -SIZE (Statistics-CaseResampling-0.16.tar.gz) = 58759 +TIMESTAMP = 1753265732 +SHA256 (Statistics-CaseResampling-0.17.tar.gz) = 6ee66d0eed81882ec4fa48fffe163a04fd98c4d56ac1e8cdc14a9f83bd1839bc +SIZE (Statistics-CaseResampling-0.17.tar.gz) = 58325 diff --git a/math/polymake/Makefile b/math/polymake/Makefile index 55312ff415cd..193dc3bf8ab4 100644 --- a/math/polymake/Makefile +++ b/math/polymake/Makefile @@ -196,4 +196,10 @@ post-install-TESTS-on: test test: @cd ${WRKSRC} && HOME=${WRKDIR} perl/polymake --script run_testcases -.include <bsd.port.mk> +.include <bsd.port.pre.mk> + +.if ${PERL_LEVEL} >= 504200 +BROKEN= polymake has not been checked for compatibility with perl 5.42 or newer +.endif + +.include <bsd.port.post.mk> diff --git a/math/py-cmaes/Makefile b/math/py-cmaes/Makefile index 698c9769c833..1e54f4115386 100644 --- a/math/py-cmaes/Makefile +++ b/math/py-cmaes/Makefile @@ -1,5 +1,5 @@ PORTNAME= cmaes -PORTVERSION= 0.11.1 +PORTVERSION= 0.12.0 CATEGORIES= math MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/math/py-cmaes/distinfo b/math/py-cmaes/distinfo index 293e049eb2aa..12bcb009a4b6 100644 --- a/math/py-cmaes/distinfo +++ b/math/py-cmaes/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1724084626 -SHA256 (cmaes-0.11.1.tar.gz) = cf71fa3679814723be771f2c9edd85f465b1bc1e409e1ad6d8a9e481efcd5160 -SIZE (cmaes-0.11.1.tar.gz) = 31439 +TIMESTAMP = 1753369398 +SHA256 (cmaes-0.12.0.tar.gz) = 6aab41eee2f38bf917560a7e7d1ba0060632cd44cdf7ac2a10704da994624182 +SIZE (cmaes-0.12.0.tar.gz) = 52779 diff --git a/math/py-grandalf/Makefile b/math/py-grandalf/Makefile index d0e8f8ad7eec..9539a066d981 100644 --- a/math/py-grandalf/Makefile +++ b/math/py-grandalf/Makefile @@ -1,5 +1,6 @@ PORTNAME= grandalf DISTVERSION= 0.8 +PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/math/py-mathics/Makefile b/math/py-mathics/Makefile index 65d3cf8ed8ad..56ec33321e68 100644 --- a/math/py-mathics/Makefile +++ b/math/py-mathics/Makefile @@ -1,5 +1,6 @@ PORTNAME= Mathics3 PORTVERSION= 8.0.1 +PORTREVISION= 1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -30,7 +31,7 @@ RUN_DEPENDS= ${PYNUMPY} \ ${PY_PILLOW} \ bash:shells/bash \ ${PYTHON_PKGNAMEPREFIX}py>0:devel/py-py@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}lxml5>0:devel/py-lxml5@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pint>0:devel/py-pint@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR} \ diff --git a/math/py-narwhals/Makefile b/math/py-narwhals/Makefile index 5777052a57e3..d1e9a8cd09c6 100644 --- a/math/py-narwhals/Makefile +++ b/math/py-narwhals/Makefile @@ -1,5 +1,5 @@ PORTNAME= narwhals -PORTVERSION= 1.46.0 +PORTVERSION= 1.48.0 CATEGORIES= math python MASTER_SITES= PYPI \ https://github.com/narwhals-dev/narwhals/releases/download/v${PORTVERSION}/ @@ -34,7 +34,7 @@ DUCKDB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}duckdb>=1.0:databases/py-duckdb@${PY_ PANDAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=1.1.3,1:math/py-pandas@${PY_FLAVOR} MODIN_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}modin>=0:math/py-modin@${PY_FLAVOR} POLARS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}polars>=0.20.4:misc/py-polars@${PY_FLAVOR} -PYARROW_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyarrow>=11.0.0:databases/py-pyarrow@${PY_FLAVOR} +PYARROW_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyarrow>=13.0.0:databases/py-pyarrow@${PY_FLAVOR} SQLFRAME_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sqlframe>=3.22.0:databases/py-sqlframe@${PY_FLAVOR} .include <bsd.port.mk> diff --git a/math/py-narwhals/distinfo b/math/py-narwhals/distinfo index 9aafed610074..ac9d951029e4 100644 --- a/math/py-narwhals/distinfo +++ b/math/py-narwhals/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752266156 -SHA256 (narwhals-1.46.0.tar.gz) = fd7e53860b233c2b5566d8b4e1b3e8e9c01b5a87649a9f9a322742000f207a60 -SIZE (narwhals-1.46.0.tar.gz) = 512060 +TIMESTAMP = 1753265778 +SHA256 (narwhals-1.48.0.tar.gz) = 7243b456cbdb60edb148731a8f9b203f473a373a249ad66c699362508730e63f +SIZE (narwhals-1.48.0.tar.gz) = 515112 diff --git a/math/py-networkx/Makefile b/math/py-networkx/Makefile index acfdb7a850a8..687730db26cb 100644 --- a/math/py-networkx/Makefile +++ b/math/py-networkx/Makefile @@ -1,5 +1,6 @@ PORTNAME= networkx DISTVERSION= 3.5 +PORTREVISION= 1 PORTEPOCH= 2 CATEGORIES= math python MASTER_SITES= PYPI @@ -47,7 +48,7 @@ GRAPHVIZ_DESC= Additional graph layout and rendering algorithms GRAPHVIZ_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pygraphviz>=1.2:graphics/py-pygraphviz@${PY_FLAVOR} LXML_DESC= Binding for the libxml2 and libxslt libraries -LXML_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml@${PY_FLAVOR} +LXML_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml5>=0:devel/py-lxml5@${PY_FLAVOR} PANDAS_DESC= Data analysis PANDAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=1.3:math/py-pandas@${PY_FLAVOR} diff --git a/math/py-pandas-datareader/Makefile b/math/py-pandas-datareader/Makefile index 82f4f3440d19..4e941b803578 100644 --- a/math/py-pandas-datareader/Makefile +++ b/math/py-pandas-datareader/Makefile @@ -1,6 +1,6 @@ PORTNAME= pandas-datareader DISTVERSION= 0.9.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math finance python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,7 +12,7 @@ WWW= https://github.com/pydata/pandas-datareader LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.md -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml5>0:devel/py-lxml5@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pandas>0.19.2:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests>=2.3.0:www/py-requests@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}requests-file>0:www/py-requests-file@${PY_FLAVOR} \ diff --git a/math/py-pandas/Makefile b/math/py-pandas/Makefile index c3ffab971454..70c2f9abe9b6 100644 --- a/math/py-pandas/Makefile +++ b/math/py-pandas/Makefile @@ -1,6 +1,6 @@ PORTNAME= pandas PORTVERSION= 2.2.3 -PORTREVISION= 1 +PORTREVISION= 2 PORTEPOCH= 1 CATEGORIES= math devel python MASTER_SITES= PYPI @@ -79,7 +79,7 @@ HTML5LIB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>=4.2.1:www/py-beautif ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR} JINJA2_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}Jinja2>0:devel/py-Jinja2@${PY_FLAVOR} LXML_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}beautifulsoup>=4.2.1:www/py-beautifulsoup@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}lxml5>0:devel/py-lxml5@${PY_FLAVOR} MPL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=2.0.0:math/py-matplotlib@${PY_FLAVOR} NUMEXPR_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numexpr>=2.6.1:math/py-numexpr@${PY_FLAVOR} OPENPYXL_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}openpyxl>=2.4.0:textproc/py-openpyxl@${PY_FLAVOR} diff --git a/math/py-vector/Makefile b/math/py-vector/Makefile index 92317737cf8e..2bff38f7fe8f 100644 --- a/math/py-vector/Makefile +++ b/math/py-vector/Makefile @@ -1,5 +1,5 @@ PORTNAME= vector -PORTVERSION= 1.6.2 +PORTVERSION= 1.6.3 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -22,4 +22,18 @@ USE_PYTHON= autoplist concurrent pep517 NO_ARCH= yes -.include <bsd.port.mk> +OPTIONS_DEFINE= AWKWARD NUMBA SYMPY +AWKWARD_DESC= Awkward arrays +NUMBA_DESC= Numba-compiled functions +SYMPY_DESC= SymPy expressions + +AWKWARD_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}awkward>=2:math/py-awkward@${PY_FLAVOR} +SYMPY_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}sympy>=0:math/py-sympy@${PY_FLAVOR} + +.include <bsd.port.pre.mk> + +.if ${PORT_OPTIONS:MNUMBA} && ${PYTHON_REL} < 31400 +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}numba>=0.57:devel/py-numba@${PY_FLAVOR} +.endif + +.include <bsd.port.post.mk> diff --git a/math/py-vector/distinfo b/math/py-vector/distinfo index 5a820226b82a..be8472579db3 100644 --- a/math/py-vector/distinfo +++ b/math/py-vector/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1747715288 -SHA256 (vector-1.6.2.tar.gz) = 6e59d9db8b615016fa542a2e8150d0c819046fe6940badd267811a454a7f0eca -SIZE (vector-1.6.2.tar.gz) = 350018 +TIMESTAMP = 1753265780 +SHA256 (vector-1.6.3.tar.gz) = a85149a62fcaa8a4d95214ca217f3910ea6800d79d65ef1cfb1005720b4f713a +SIZE (vector-1.6.3.tar.gz) = 352886 diff --git a/math/saga/Makefile b/math/saga/Makefile index a42c4530474d..4816be5c055e 100644 --- a/math/saga/Makefile +++ b/math/saga/Makefile @@ -1,5 +1,5 @@ PORTNAME= saga -PORTVERSION= 9.9.0 +PORTVERSION= 9.9.1 CATEGORIES= math MASTER_SITES= SF/saga-gis/SAGA%20-%20${PORTVERSION:C/\.[[:digit:]]\.[[:digit:]]*$//}/SAGA%20-%20${PORTVERSION} @@ -35,7 +35,7 @@ DOS2UNIX_GLOB= *.cpp *.h USE_LDCONFIG= yes USE_WX= 3.2+ -GIT_TAGNAME= c415d8804 +GIT_TAGNAME= f41608881 CMAKE_ARGS= -DSVM_INCLUDE:PATH=${LOCALBASE}/include/svm.h CMAKE_ON= CMAKE_VERBOSE_MAKEFILE diff --git a/math/saga/distinfo b/math/saga/distinfo index 4dc84b16723e..f17c2ff8d063 100644 --- a/math/saga/distinfo +++ b/math/saga/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752735353 -SHA256 (saga-9.9.0.tar.gz) = c52f61f101a6e8f1fcaf1d2a5e6be8943a47f5fcbc99aec794155b428e695f84 -SIZE (saga-9.9.0.tar.gz) = 10699213 +TIMESTAMP = 1753265252 +SHA256 (saga-9.9.1.tar.gz) = 227ca9c950a4d3cb6c07229a2014455a5770473d4090d0a0143dc32f8386f38c +SIZE (saga-9.9.1.tar.gz) = 10699714 diff --git a/math/scipoptsuite/Makefile b/math/scipoptsuite/Makefile index f10c7a538453..ce001d0eb252 100644 --- a/math/scipoptsuite/Makefile +++ b/math/scipoptsuite/Makefile @@ -1,6 +1,5 @@ PORTNAME= scipoptsuite -DISTVERSION= 9.2.1 -PORTREVISION= 1 +DISTVERSION= 9.2.3 CATEGORIES= math MASTER_SITES= https://scipopt.org/download/release/ diff --git a/math/scipoptsuite/distinfo b/math/scipoptsuite/distinfo index 1f8e70d74fa3..23a32f5a0226 100644 --- a/math/scipoptsuite/distinfo +++ b/math/scipoptsuite/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1742782011 -SHA256 (scipoptsuite-9.2.1.tgz) = 41b71a57af773403e9a6724f78c37d8396ac4b6b270a9bbf3716d67f1af12edf -SIZE (scipoptsuite-9.2.1.tgz) = 17608938 +TIMESTAMP = 1752906975 +SHA256 (scipoptsuite-9.2.3.tgz) = 9cb8278ce40b59939a200a36bd1ee3b9a7923b3c6df5c31b135a5a42ecabac5a +SIZE (scipoptsuite-9.2.3.tgz) = 17627327 diff --git a/math/scipoptsuite/pkg-plist b/math/scipoptsuite/pkg-plist index 102d232f0959..59f2544e4a17 100644 --- a/math/scipoptsuite/pkg-plist +++ b/math/scipoptsuite/pkg-plist @@ -1095,15 +1095,15 @@ lib/cmake/zimpl/zimpl-targets-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/zimpl/zimpl-targets.cmake lib/libgcg.so lib/libgcg.so.3.7 -lib/libgcg.so.3.7.1.0 +lib/libgcg.so.3.7.2.0 lib/libpapilo-core.a lib/libscip.so lib/libscip.so.9.2 -lib/libscip.so.9.2.1.0 +lib/libscip.so.9.2.3.0 lib/libsoplex-pic.a lib/libsoplex.a lib/libsoplexshared.so lib/libsoplexshared.so.7.1 -lib/libsoplexshared.so.7.1.3.0 +lib/libsoplexshared.so.7.1.5.0 lib/libzimpl-pic.a lib/libzimpl.a diff --git a/math/vtk8/Makefile b/math/vtk8/Makefile index d0a3a97bdb2d..06d0030f5f76 100644 --- a/math/vtk8/Makefile +++ b/math/vtk8/Makefile @@ -12,6 +12,7 @@ WWW= https://www.vtk.org LICENSE= BSD3CLAUSE +BROKEN_FreeBSD_13= complation fails: error: no member named 'derived' in 'Transpose<TranspositionsBase<type-parameter-0-0>>' BROKEN_FreeBSD_15= complation fails: error: no member named 'derived' in 'Transpose<TranspositionsBase<type-parameter-0-0>>' LIB_DEPENDS= libtiff.so:graphics/tiff \ |