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-rw-r--r--math/octave-forge-financial/Makefile5
-rw-r--r--math/octave-forge-financial/distinfo6
-rw-r--r--math/octave-forge/Makefile3
-rw-r--r--math/p5-Math-GMPq/Makefile2
-rw-r--r--math/p5-Math-GMPq/distinfo6
-rw-r--r--math/p5-Math-GMPz/Makefile2
-rw-r--r--math/p5-Math-GMPz/distinfo6
-rw-r--r--math/py-CyLP/Makefile2
-rw-r--r--math/py-CyLP/files/patch-cython10
-rw-r--r--math/py-awkward/Makefile4
-rw-r--r--math/py-awkward/distinfo6
-rw-r--r--math/py-narwhals/Makefile4
-rw-r--r--math/py-narwhals/distinfo6
-rw-r--r--math/py-numexpr/Makefile4
-rw-r--r--math/py-numexpr/distinfo6
-rw-r--r--math/py-numexpr/files/patch-pyproject.toml11
-rw-r--r--math/py-pandas/Makefile1
-rw-r--r--math/py-pandas/files/patch-pyproject.toml3
-rw-r--r--math/py-petsc4py/files/patch-cython101
19 files changed, 154 insertions, 34 deletions
diff --git a/math/octave-forge-financial/Makefile b/math/octave-forge-financial/Makefile
index beb5587f00a6..ae647de46802 100644
--- a/math/octave-forge-financial/Makefile
+++ b/math/octave-forge-financial/Makefile
@@ -1,6 +1,5 @@
PORTNAME= octave-forge-financial
-PORTVERSION= 0.5.3
-PORTREVISION= 11
+PORTVERSION= 0.5.4
CATEGORIES= math
MASTER_SITES= SF/octave/Octave%20Forge%20Packages/Individual%20Package%20Releases
DISTNAME= ${OCTAVE_PKGNAME}-${DISTVERSIONFULL}
@@ -15,8 +14,6 @@ LICENSE_FILE= ${WRKDIR}/${OCTAVE_SRC}/COPYING
RUN_DEPENDS= ${OCTAVE_TARBALLS_DIR}/io.tar.gz:math/octave-forge-io \
${OCTAVE_TARBALLS_DIR}/statistics.tar.gz:math/octave-forge-statistics
-BROKEN= does not install with octave version >= 9.1.0
-
USES= octave
NO_ARCH= yes
diff --git a/math/octave-forge-financial/distinfo b/math/octave-forge-financial/distinfo
index 1b6d83598d91..0728d676b6de 100644
--- a/math/octave-forge-financial/distinfo
+++ b/math/octave-forge-financial/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1542397369
-SHA256 (octave-forge/financial-0.5.3.tar.gz) = ae6ef255597567c79e15f2b78e2d22febf43bc0d679de7ca6c79f36b9e1f2639
-SIZE (octave-forge/financial-0.5.3.tar.gz) = 80482
+TIMESTAMP = 1750880519
+SHA256 (octave-forge/financial-0.5.4.tar.gz) = 0b906886b4c754c683ad5f464dba797743af5d1faccd032357986f38d16d3fbb
+SIZE (octave-forge/financial-0.5.4.tar.gz) = 80390
diff --git a/math/octave-forge/Makefile b/math/octave-forge/Makefile
index 8aa9fd1b7535..c7deaaa6d266 100644
--- a/math/octave-forge/Makefile
+++ b/math/octave-forge/Makefile
@@ -1,5 +1,6 @@
PORTNAME= octave-forge
PORTVERSION= 20250525
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= stephen@FreeBSD.org
@@ -37,7 +38,7 @@ OPTIONS_DEFINE= AUDIO ACTUARIAL AUTOMATIC_DIFFERENTIATION \
TSA VIDEO VELAS \
WEBSOCKETS ZENITY ZEROMQ
-OPTIONS_DEFAULT= ${OPTIONS_DEFINE:NBIOINFO:NCHARTJS:NDATA_SMOOTHING:NDATABASE:NECONOMETRICS:NFINANCIAL:NFITS:NGNUPLOT:NINFORMATIONTHEORY:NIRSA:NLEVEL_SET:NMECHANICS:NMPI:NNNET:NNLWING2:NPIQP:NPLOT:NOPTIM:NSYMBAND:NSPECFUN}
+OPTIONS_DEFAULT= ${OPTIONS_DEFINE:NBIOINFO:NCHARTJS:NDATA_SMOOTHING:NDATABASE:NECONOMETRICS:NFITS:NGNUPLOT:NINFORMATIONTHEORY:NIRSA:NLEVEL_SET:NMECHANICS:NMPI:NNNET:NNLWING2:NPIQP:NPLOT:NOPTIM:NSYMBAND:NSPECFUN}
OCTAVE_TARBALLS_DIR= ${LOCALBASE}/share/octave/tarballs
diff --git a/math/p5-Math-GMPq/Makefile b/math/p5-Math-GMPq/Makefile
index a436ddcc945d..6b4f7392d9e3 100644
--- a/math/p5-Math-GMPq/Makefile
+++ b/math/p5-Math-GMPq/Makefile
@@ -1,5 +1,5 @@
PORTNAME= Math-GMPq
-PORTVERSION= 0.66
+PORTVERSION= 0.67
CATEGORIES= math perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/math/p5-Math-GMPq/distinfo b/math/p5-Math-GMPq/distinfo
index 4108a3ecae1f..18277abedf93 100644
--- a/math/p5-Math-GMPq/distinfo
+++ b/math/p5-Math-GMPq/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1747715320
-SHA256 (Math-GMPq-0.66.tar.gz) = 4f4da406b3bc646af495a202667b3497114311b84efac9bd7f7ea5576b8ea082
-SIZE (Math-GMPq-0.66.tar.gz) = 70318
+TIMESTAMP = 1750188040
+SHA256 (Math-GMPq-0.67.tar.gz) = 45a5ce5da5975efdb43ca2511b6fba0827baed9224829b26cd7b020a92eb0770
+SIZE (Math-GMPq-0.67.tar.gz) = 70782
diff --git a/math/p5-Math-GMPz/Makefile b/math/p5-Math-GMPz/Makefile
index fc5ded25e990..95eb4aa47b8e 100644
--- a/math/p5-Math-GMPz/Makefile
+++ b/math/p5-Math-GMPz/Makefile
@@ -1,5 +1,5 @@
PORTNAME= Math-GMPz
-PORTVERSION= 0.66
+PORTVERSION= 0.67
CATEGORIES= math perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/math/p5-Math-GMPz/distinfo b/math/p5-Math-GMPz/distinfo
index 913e2daf3f5e..2669f901db5b 100644
--- a/math/p5-Math-GMPz/distinfo
+++ b/math/p5-Math-GMPz/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748495733
-SHA256 (Math-GMPz-0.66.tar.gz) = 09429af657063e2b0128ab0b2bf8c5a926d2d7536c228fcf046fdd04307d7d84
-SIZE (Math-GMPz-0.66.tar.gz) = 111421
+TIMESTAMP = 1750188042
+SHA256 (Math-GMPz-0.67.tar.gz) = 534ab5799815145161328fff6a4742cc19bbcc9e4c1149478390d73377bc2706
+SIZE (Math-GMPz-0.67.tar.gz) = 110724
diff --git a/math/py-CyLP/Makefile b/math/py-CyLP/Makefile
index 24e953829189..088d382fadea 100644
--- a/math/py-CyLP/Makefile
+++ b/math/py-CyLP/Makefile
@@ -1,7 +1,7 @@
PORTNAME= CyLP
DISTVERSIONPREFIX= v
DISTVERSION= 0.92.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/py-CyLP/files/patch-cython b/math/py-CyLP/files/patch-cython
new file mode 100644
index 000000000000..790d2e24b939
--- /dev/null
+++ b/math/py-CyLP/files/patch-cython
@@ -0,0 +1,10 @@
+--- cylp/cy/CyClpSimplex.pyx.orig 2024-08-20 08:36:08 UTC
++++ cylp/cy/CyClpSimplex.pyx
+@@ -20,6 +20,7 @@ from cylp.cy cimport CyCoinMpsIO
+ from cylp.py.pivots.DualPivotPythonBase import DualPivotPythonBase
+ from cylp.py.modeling.CyLPModel import CyLPModel
+ from cylp.cy cimport CyCoinMpsIO
++from ctypes import c_long as long
+
+ # Initialize numpy
+ np.import_array()
diff --git a/math/py-awkward/Makefile b/math/py-awkward/Makefile
index 478f457f125b..904d57ed0bfa 100644
--- a/math/py-awkward/Makefile
+++ b/math/py-awkward/Makefile
@@ -1,5 +1,5 @@
PORTNAME= awkward
-PORTVERSION= 2.8.3
+PORTVERSION= 2.8.4
CATEGORIES= math python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@@ -19,7 +19,7 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}awkward-cpp>=46<46_99:math/py-awkward-cpp@${
${PYTHON_PKGNAMEPREFIX}numpy>=1.18.0,1:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}packaging>=0:devel/py-packaging@${PY_FLAVOR}
-USES= python:3.9+
+USES= python
USE_PYTHON= autoplist concurrent pep517
NO_ARCH= yes
diff --git a/math/py-awkward/distinfo b/math/py-awkward/distinfo
index 9c3d98394713..b634b5801200 100644
--- a/math/py-awkward/distinfo
+++ b/math/py-awkward/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1747715448
-SHA256 (awkward-2.8.3.tar.gz) = 31db6f8d923a844791d6bfc233397fd4b34c72ade47852727b75278f1351f904
-SIZE (awkward-2.8.3.tar.gz) = 6221920
+TIMESTAMP = 1750188124
+SHA256 (awkward-2.8.4.tar.gz) = 840ee49120d882c892e12fe8be2195991cab95c3dab4a6ee76b4a9696a1ebc9b
+SIZE (awkward-2.8.4.tar.gz) = 6222255
diff --git a/math/py-narwhals/Makefile b/math/py-narwhals/Makefile
index 1e738a048f82..6a7915f084b2 100644
--- a/math/py-narwhals/Makefile
+++ b/math/py-narwhals/Makefile
@@ -1,5 +1,5 @@
PORTNAME= narwhals
-PORTVERSION= 1.42.0
+PORTVERSION= 1.43.0
CATEGORIES= math python
MASTER_SITES= PYPI \
https://github.com/narwhals-dev/narwhals/releases/download/v${PORTVERSION}/
@@ -31,7 +31,7 @@ SQLFRAME_DESC= SQLFrame support
DASK_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}dask>=2024.8:devel/py-dask@${PY_FLAVOR}
DUCKDB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}duckdb>=1.0:databases/py-duckdb@${PY_FLAVOR}
-PANDAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=0.25.3,1:math/py-pandas@${PY_FLAVOR}
+PANDAS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=1.1.3,1:math/py-pandas@${PY_FLAVOR}
MODIN_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}modin>=0:math/py-modin@${PY_FLAVOR}
POLARS_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}polars>=0.20.3:misc/py-polars@${PY_FLAVOR}
PYARROW_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyarrow>=11.0.0:databases/py-pyarrow@${PY_FLAVOR}
diff --git a/math/py-narwhals/distinfo b/math/py-narwhals/distinfo
index 19d029424dcc..c6717255dad6 100644
--- a/math/py-narwhals/distinfo
+++ b/math/py-narwhals/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1749813100
-SHA256 (narwhals-1.42.0.tar.gz) = a5e554782446d1197593312651352cd39b2025e995053d8e6bdfaa01a70a91d3
-SIZE (narwhals-1.42.0.tar.gz) = 490671
+TIMESTAMP = 1750188126
+SHA256 (narwhals-1.43.0.tar.gz) = 5a28119401fccb4d344704f806438a983bb0a5b3f4a638760d25b1d521a18a79
+SIZE (narwhals-1.43.0.tar.gz) = 496455
diff --git a/math/py-numexpr/Makefile b/math/py-numexpr/Makefile
index c32a9698a4ab..625e573db981 100644
--- a/math/py-numexpr/Makefile
+++ b/math/py-numexpr/Makefile
@@ -1,5 +1,5 @@
PORTNAME= numexpr
-PORTVERSION= 2.10.2
+PORTVERSION= 2.11.0
CATEGORIES= math python
MASTER_SITES= PYPI \
https://github.com/pydata/numexpr/releases/download/v${PORTVERSION}/
@@ -17,7 +17,7 @@ BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>=1.23.0,1:math/py-numpy@${PY_FLAVOR}
-USES= dos2unix python:3.9+
+USES= dos2unix python:3.10+
USE_PYTHON= autoplist concurrent pep517
post-install:
diff --git a/math/py-numexpr/distinfo b/math/py-numexpr/distinfo
index 5a8cd7f2b38c..c96ebe825f40 100644
--- a/math/py-numexpr/distinfo
+++ b/math/py-numexpr/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1734888336
-SHA256 (numexpr-2.10.2.tar.gz) = b0aff6b48ebc99d2f54f27b5f73a58cb92fde650aeff1b397c71c8788b4fff1a
-SIZE (numexpr-2.10.2.tar.gz) = 106787
+TIMESTAMP = 1750188128
+SHA256 (numexpr-2.11.0.tar.gz) = 75b2c01a4eda2e7c357bc67a3f5c3dd76506c15b5fd4dc42845ef2e182181bad
+SIZE (numexpr-2.11.0.tar.gz) = 108960
diff --git a/math/py-numexpr/files/patch-pyproject.toml b/math/py-numexpr/files/patch-pyproject.toml
index 66558beeca1f..da1b991c2e63 100644
--- a/math/py-numexpr/files/patch-pyproject.toml
+++ b/math/py-numexpr/files/patch-pyproject.toml
@@ -1,4 +1,4 @@
---- pyproject.toml.orig 2024-06-20 17:09:56 UTC
+--- pyproject.toml.orig 2025-06-19 14:14:08 UTC
+++ pyproject.toml
@@ -2,7 +2,7 @@ requires = [
requires = [
@@ -9,3 +9,12 @@
]
build-backend = "setuptools.build_meta"
+@@ -15,7 +15,7 @@ maintainers = [{ name = "Blosc Development Team", emai
+ readme = "README.rst"
+ authors = [{name = "David M. Cooke, Francesc Alted, and others", email = "blosc@blosc.org"}]
+ maintainers = [{ name = "Blosc Development Team", email = "blosc@blosc.org"}]
+-license = "MIT"
++license = {text = "MIT"}
+ classifiers = [
+ "Development Status :: 6 - Mature",
+ "Intended Audience :: Developers",
diff --git a/math/py-pandas/Makefile b/math/py-pandas/Makefile
index 956fd1610b28..c3ffab971454 100644
--- a/math/py-pandas/Makefile
+++ b/math/py-pandas/Makefile
@@ -1,5 +1,6 @@
PORTNAME= pandas
PORTVERSION= 2.2.3
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= math devel python
MASTER_SITES= PYPI
diff --git a/math/py-pandas/files/patch-pyproject.toml b/math/py-pandas/files/patch-pyproject.toml
index ed0dc0e94664..63506fa05bea 100644
--- a/math/py-pandas/files/patch-pyproject.toml
+++ b/math/py-pandas/files/patch-pyproject.toml
@@ -9,7 +9,8 @@
+ "meson-python>=0.13.1",
+ "meson>=1.2.1",
"wheel",
- "Cython~=3.0.5", # Note: sync with setup.py, environment.yml and asv.conf.json
+- "Cython~=3.0.5", # Note: sync with setup.py, environment.yml and asv.conf.json
++ "Cython>=3.0.5", # Note: sync with setup.py, environment.yml and asv.conf.json
# Force numpy higher than 2.0, so that built wheels are compatible
# with both numpy 1 and 2
- "numpy>=2.0",
diff --git a/math/py-petsc4py/files/patch-cython b/math/py-petsc4py/files/patch-cython
new file mode 100644
index 000000000000..2fb9419b9dbc
--- /dev/null
+++ b/math/py-petsc4py/files/patch-cython
@@ -0,0 +1,101 @@
+Obtained from: https://gitlab.com/petsc/petsc/-/commit/87b0c9e1f4d83439f081eddd06cf19f419b1e4f9
+
+--- conf/cyautodoc.py.orig 2025-01-29 22:17:46 UTC
++++ conf/cyautodoc.py
+@@ -24,8 +24,9 @@ class ExpressionWriter(BaseExpressionWriter):
+ self.visit(node.index)
+ self.put(']')
+
+- def visit_UnicodeNode(self, node):
+- self.emit_string(node, '')
++ if hasattr(BaseExpressionWriter, 'emit_string'):
++ def visit_UnicodeNode(self, node):
++ self.emit_string(node, '')
+
+
+ class AnnotationWriter(ExpressionWriter, BaseAnnotationWriter):
+--- src/petsc4py/PETSc/petscdm.pxi.orig 2025-01-29 22:17:46 UTC
++++ src/petsc4py/PETSc/petscdm.pxi
+@@ -236,9 +236,12 @@ cdef inline PetscInt asBoundary(object boundary,
+ PetscDMBoundaryType *_z) except -1:
+ cdef PetscInt dim = 0
+ cdef object x=None, y=None, z=None
++ # Use `type(0)` instead of `int` to workaround
++ # Cython 3.1 failing to interpret `int` as a type
++ cdef type pyint = type(0)
+ if boundary is None or \
+ isinstance(boundary, str) or \
+- isinstance(boundary, int):
++ isinstance(boundary, pyint):
+ _x[0] = _y[0] = _z[0] = asBoundaryType(boundary)
+ else:
+ _x[0] = _y[0] = _z[0] = DM_BOUNDARY_NONE
+--- src/petsc4py/PETSc/petscis.pxi.orig 2025-01-29 22:17:46 UTC
++++ src/petsc4py/PETSc/petscis.pxi
+@@ -181,28 +181,6 @@ cdef class _IS_buffer:
+ def __exit__(self, *exc):
+ return self.exit()
+
+- # buffer interface (legacy)
+-
+- cdef Py_ssize_t getbuffer(self, void **p) except -1:
+- cdef PetscInt n = 0
+- if p != NULL:
+- self.acquire()
+- p[0] = <void*>self.data
+- n = self.size
+- elif self.iset != NULL:
+- CHKERR(ISGetLocalSize(self.iset, &n))
+- return <Py_ssize_t>(<size_t>n*sizeof(PetscInt))
+-
+- def __getsegcount__(self, Py_ssize_t *lenp):
+- if lenp != NULL:
+- lenp[0] = self.getbuffer(NULL)
+- return 1
+-
+- def __getreadbuffer__(self, Py_ssize_t idx, void **p):
+- if idx != 0: raise SystemError(
+- "accessing non-existent buffer segment")
+- return self.getbuffer(p)
+-
+ # NumPy array interface (legacy)
+
+ property __array_interface__:
+--- src/petsc4py/PETSc/petscvec.pxi.orig 2025-01-29 22:17:46 UTC
++++ src/petsc4py/PETSc/petscvec.pxi
+@@ -573,35 +573,6 @@ cdef class _Vec_buffer:
+ def __exit__(self, *exc):
+ return self.exit()
+
+- # buffer interface (legacy)
+-
+- cdef Py_ssize_t getbuffer(self, void **p) except -1:
+- cdef PetscInt n = 0
+- if p != NULL:
+- self.acquire()
+- p[0] = <void*>self.data
+- n = self.size
+- elif self.vec != NULL:
+- CHKERR(VecGetLocalSize(self.vec, &n))
+- return <Py_ssize_t>(<size_t>n*sizeof(PetscScalar))
+-
+- def __getsegcount__(self, Py_ssize_t *lenp):
+- if lenp != NULL:
+- lenp[0] = self.getbuffer(NULL)
+- return 1
+-
+- def __getreadbuffer__(self, Py_ssize_t idx, void **p):
+- if idx != 0: raise SystemError(
+- "accessing non-existent buffer segment")
+- return self.getbuffer(p)
+-
+- def __getwritebuffer__(self, Py_ssize_t idx, void **p):
+- if idx != 0: raise SystemError(
+- "accessing non-existent buffer segment")
+- if self.readonly: raise TypeError(
+- "Object is not writable.")
+- return self.getbuffer(p)
+-
+ # NumPy array interface (legacy)
+
+ property __array_interface__:
generated by cgit v1.2.3 (git 2.25.1) at 2025-06-26 12:46:18 +0000