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-rw-r--r--biology/vsearch/files/patch-src_sintax.cc12
1 files changed, 6 insertions, 6 deletions
diff --git a/biology/vsearch/files/patch-src_sintax.cc b/biology/vsearch/files/patch-src_sintax.cc
index c6cd9ec46abb..b5af8da42d6e 100644
--- a/biology/vsearch/files/patch-src_sintax.cc
+++ b/biology/vsearch/files/patch-src_sintax.cc
@@ -1,7 +1,7 @@
---- src/sintax.cc.orig 2024-09-26 10:48:55 UTC
+--- src/sintax.cc.orig 2025-10-05 12:34:38 UTC
+++ src/sintax.cc
-@@ -289,9 +289,14 @@ auto sintax_search_topscores(struct searchinfo_s * si)
- if (bitmap)
+@@ -295,9 +295,14 @@ auto sintax_search_topscores(struct searchinfo_s * sea
+ if (bitmap != nullptr)
{
#ifdef __x86_64__
+ // Not sure how to enable ssse3 without enabling other
@@ -9,10 +9,10 @@
+ // This code is only used rarely, so disable ssse3 for now.
+ // It won't affect performance much on the whole.
+ // https://github.com/torognes/vsearch/pull/497
- if (ssse3_present)
+ if (ssse3_present != 0)
{
-- increment_counters_from_bitmap_ssse3(si->kmers,
-+ increment_counters_from_bitmap_sse2(si->kmers,
+- increment_counters_from_bitmap_ssse3(searchinfo->kmers,
++ increment_counters_from_bitmap_sse2(searchinfo->kmers,
bitmap, indexed_count);
}
else