diff options
Diffstat (limited to 'biology/vcflib')
| -rw-r--r-- | biology/vcflib/files/patch-src-zig-samples.zig | 31 | ||||
| -rw-r--r-- | biology/vcflib/pkg-plist | 2 |
2 files changed, 32 insertions, 1 deletions
diff --git a/biology/vcflib/files/patch-src-zig-samples.zig b/biology/vcflib/files/patch-src-zig-samples.zig new file mode 100644 index 000000000000..e69584b175e0 --- /dev/null +++ b/biology/vcflib/files/patch-src-zig-samples.zig @@ -0,0 +1,31 @@ +diff --git src/zig/samples.zig src/zig/samples.zig +index cb05a1f2..ccd5b149 100644 +--- src/zig/samples.zig ++++ src/zig/samples.zig +@@ -28,7 +28,11 @@ const GENOTYPE_MISSING = -256; + fn split_samples(str: []const u8) *ArrayList([] const u8) { + var list = ArrayList([] const u8).init(allocator); + defer list.deinit(); +- var splits = std.mem.split(u8, str, " "); ++ ++ var splits = if (@hasDecl(std.mem, "splitScalar")) ++ std.mem.splitScalar(u8, str, ' ') ++ else ++ std.mem.split(u8, str, ' '); + while (splits.next()) |chunk| { + list.append(chunk) catch |err| { + std.debug.print("out of memory {}\n", .{err}); +@@ -61,10 +65,10 @@ const Genotypes = struct { + fn to_num(str: []const u8) !ArrayList(i64) { + var list = ArrayList(i64).init(allocator); + +- var splits = if (is_phased(str)) +- std.mem.split(u8, str, "|") ++ var splits = if (@hasDecl(std.mem, "splitScalar")) ++ std.mem.splitScalar(u8, str, if (is_phased(str)) '|' else '/') + else +- std.mem.split(u8, str, "/"); ++ std.mem.split(u8, str, if (is_phased(str)) '|' else '/' ); + + while (splits.next()) |chunk| { + const i: i64 = diff --git a/biology/vcflib/pkg-plist b/biology/vcflib/pkg-plist index d5e562de28bf..b50497d0c267 100644 --- a/biology/vcflib/pkg-plist +++ b/biology/vcflib/pkg-plist @@ -159,7 +159,7 @@ include/vcflib/var.hpp include/vcflib/vcf-c-api.h include/vcflib/vcf-wfa.h lib/libvcflib.a -lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so +lib/pyvcflib%%PYTHON_TAG%%.so share/man/man1/abba-baba.1.gz share/man/man1/bFst.1.gz share/man/man1/dumpContigsFromHeader.1.gz |