diff options
Diffstat (limited to 'biology/py-orange3-single-cell')
| -rw-r--r-- | biology/py-orange3-single-cell/Makefile | 46 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/files/patch-doc_conf.py | 10 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/pkg-descr | 2 |
4 files changed, 0 insertions, 61 deletions
diff --git a/biology/py-orange3-single-cell/Makefile b/biology/py-orange3-single-cell/Makefile deleted file mode 100644 index 54d72a4516fd..000000000000 --- a/biology/py-orange3-single-cell/Makefile +++ /dev/null @@ -1,46 +0,0 @@ -PORTNAME= orange3-single-cell -DISTVERSION= 0.8.2 -PORTREVISION= 6 -CATEGORIES= biology python -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} - -MAINTAINER= yuri@FreeBSD.org -COMMENT= Orange add-on for gene expression of single cell data -WWW= https://singlecell.biolab.si/ - -LICENSE= AGPLv3+ - -DEPRECATED= Depends on expired math/py-fastdtw and expiring misc/orange3 -EXPIRATION_DATE=2025-06-21 - -RUN_DEPENDS= orange3>0:misc/orange3 \ - ${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}astropy>0:astro/py-astropy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}fastdtw>0:math/py-fastdtw@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}joblib>=0.11:devel/py-joblib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}loompy>=2.0.10:biology/py-loompy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pandas>=0.23:math/py-pandas@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \ - ${PYNUMPY} - -# Supports 3.4+ but loompy 3.6+ only. -USES= python -USE_GITHUB= yes -GH_ACCOUNT= biolab -USE_PYTHON= distutils autoplist - -NO_ARCH= yes - -OPTIONS_DEFINE= DOCS - -DOCS_BUILD_DEPENDS= gmake:devel/gmake \ - ${PYTHON_PKGNAMEPREFIX}sphinx>=0,1:textproc/py-sphinx@${PY_FLAVOR} - -pre-build-DOCS-on: - @cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${GMAKE} html htmlhelp SPHINXBUILD=${LOCALBASE}/bin/sphinx-build-${PYTHON_VER} - -pre-build-DOCS-off: - @${REINPLACE_CMD} "s|^ include_documentation| #include_documentation|" ${WRKSRC}/setup.py - -.include <bsd.port.mk> diff --git a/biology/py-orange3-single-cell/distinfo b/biology/py-orange3-single-cell/distinfo deleted file mode 100644 index ed5f301ce6e1..000000000000 --- a/biology/py-orange3-single-cell/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -TIMESTAMP = 1539761270 -SHA256 (biolab-orange3-single-cell-0.8.2_GH0.tar.gz) = eebda4303c208951fcbe8f383e0f310b20abedba425b0c68bbe65ae2806cc1bb -SIZE (biolab-orange3-single-cell-0.8.2_GH0.tar.gz) = 5521782 diff --git a/biology/py-orange3-single-cell/files/patch-doc_conf.py b/biology/py-orange3-single-cell/files/patch-doc_conf.py deleted file mode 100644 index a3ecb4c652db..000000000000 --- a/biology/py-orange3-single-cell/files/patch-doc_conf.py +++ /dev/null @@ -1,10 +0,0 @@ -# add_stylesheet() deprecated on Sphinx 4.0 -# https://www.sphinx-doc.org/en/master/extdev/deprecated.html ---- doc/conf.py.orig 2018-10-15 08:43:14 UTC -+++ doc/conf.py -@@ -288,4 +288,4 @@ texinfo_documents = [ - #texinfo_no_detailmenu = False - - def setup(app): -- app.add_stylesheet('style.css') -+ app.add_css_file('style.css') diff --git a/biology/py-orange3-single-cell/pkg-descr b/biology/py-orange3-single-cell/pkg-descr deleted file mode 100644 index 05cf4bfc5f8a..000000000000 --- a/biology/py-orange3-single-cell/pkg-descr +++ /dev/null @@ -1,2 +0,0 @@ -The Single Cell add-on for Orange3 adds functionality for analysis of single -cell data. |