diff options
Diffstat (limited to 'biology/paml')
| -rw-r--r-- | biology/paml/Makefile | 3 | ||||
| -rw-r--r-- | biology/paml/distinfo | 6 | ||||
| -rw-r--r-- | biology/paml/files/patch-src_Makefile | 15 | ||||
| -rw-r--r-- | biology/paml/pkg-plist | 2 |
4 files changed, 13 insertions, 13 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 7ba18e506f72..4a6375689d5e 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -1,5 +1,6 @@ PORTNAME= paml -DISTVERSION= 4.10.7 +DISTVERSIONPREFIX= v +DISTVERSION= 4.10.9 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/paml/distinfo b/biology/paml/distinfo index cd64f0e34127..7dd47591a370 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1688759942 -SHA256 (abacus-gene-paml-4.10.7_GH0.tar.gz) = 0f29e768b3797b69eadc6332c3d046d8727702052d56c3b729883626c0a5a4e3 -SIZE (abacus-gene-paml-4.10.7_GH0.tar.gz) = 5250841 +TIMESTAMP = 1747232666 +SHA256 (abacus-gene-paml-v4.10.9_GH0.tar.gz) = 19ca9d484d729324748b9c86453e4c8f4a1fa79ad6fa3ac7cdbfaa7d0bfb8c22 +SIZE (abacus-gene-paml-v4.10.9_GH0.tar.gz) = 3920159 diff --git a/biology/paml/files/patch-src_Makefile b/biology/paml/files/patch-src_Makefile index 4a9bd7ed2da6..1fd048a0594b 100644 --- a/biology/paml/files/patch-src_Makefile +++ b/biology/paml/files/patch-src_Makefile @@ -1,10 +1,11 @@ ---- src/Makefile.orig 2023-07-08 03:40:50 UTC +--- src/Makefile.orig 2025-05-14 14:29:51 UTC +++ src/Makefile -@@ -1,6 +1,6 @@ CC = cc # cc, gcc, cl +@@ -1,6 +1,6 @@ PRGS = baseml codeml basemlg mcmctree pamp evolver yn PRGS = baseml codeml basemlg mcmctree pamp evolver yn00 chi2 - CC = cc # cc, gcc, cl --CFLAGS = -O3 -Wall -Wno-unused-result -Wmemset-elt-size -+CFLAGS = -O3 -Wall -Wno-unused-result - #CC = icc - #CFLAGS = -fast -Wall +-CC = gcc +-CFLAGS = -O3 -Wall -Wno-unused-variable -Wno-unused-result ++#CC = gcc ++#CFLAGS = -O3 -Wall -Wno-unused-variable -Wno-unused-result + + LIBS = -lm diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 544b761367c3..02f053d2563e 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -199,8 +199,6 @@ bin/yn00 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/data-MCU0.95-rep1.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/mlb-nhomo4.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/mlb-nhomo5.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/rst-nhomo4.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/rst-nhomo5.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/tree-nhomo4.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nhomo/tree-nhomo5.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pamp.ctl |