diff options
Diffstat (limited to 'biology/hyphy')
| -rw-r--r-- | biology/hyphy/Makefile | 2 | ||||
| -rw-r--r-- | biology/hyphy/distinfo | 6 | ||||
| -rw-r--r-- | biology/hyphy/pkg-plist | 9 |
3 files changed, 12 insertions, 5 deletions
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index 55476ed67c9b..f281649f9c47 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,5 +1,5 @@ PORTNAME= hyphy -DISTVERSION= 2.5.70 +DISTVERSION= 2.5.73 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo index 7b906e8bb328..ae85017d004d 100644 --- a/biology/hyphy/distinfo +++ b/biology/hyphy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1742777609 -SHA256 (veg-hyphy-2.5.70_GH0.tar.gz) = 38c2549dcaec9f7df63b5e3aab965794484edc11a221fa0c0d909f7c68614de3 -SIZE (veg-hyphy-2.5.70_GH0.tar.gz) = 5617978 +TIMESTAMP = 1747240205 +SHA256 (veg-hyphy-2.5.73_GH0.tar.gz) = efc64adb9f270aa6c284dbee22a16132f4e59126e9df071c5267cd79e2883969 +SIZE (veg-hyphy-2.5.73_GH0.tar.gz) = 4161304 diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist index 2f58e0cb50d2..cea5332c2742 100644 --- a/biology/hyphy/pkg-plist +++ b/biology/hyphy/pkg-plist @@ -11,6 +11,7 @@ bin/hyphy %%DATADIR%%/GeneticCodes/Thraustochytrium_mtDNA.cod %%DATADIR%%/GeneticCodes/Vertebratemtdna.cod %%DATADIR%%/GeneticCodes/Yeast_mtDNA.cod +%%DATADIR%%/README.md %%DATADIR%%/SubstitutionClasses/AAEFV/Equal %%DATADIR%%/SubstitutionClasses/AAEFV/Estimated %%DATADIR%%/SubstitutionClasses/AAEFV/Observed In Data Set @@ -177,6 +178,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf %%DATADIR%%/TemplateBatchFiles/Samplers/srs.ibf %%DATADIR%%/TemplateBatchFiles/SandNSAmbigs.bf +%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/BUSTED-PH.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/FADE.bf @@ -333,7 +335,6 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/Utility/BranchLengthFitters.bf %%DATADIR%%/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf %%DATADIR%%/TemplateBatchFiles/Utility/CodonTools.bf -%%DATADIR%%/TemplateBatchFiles/Utility/DBTools.ibf %%DATADIR%%/TemplateBatchFiles/Utility/DescriptiveStatistics.bf %%DATADIR%%/TemplateBatchFiles/Utility/GrabBag.bf %%DATADIR%%/TemplateBatchFiles/Utility/HXB2Mapper.bf @@ -371,6 +372,10 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/globalChecker.ibf %%DATADIR%%/TemplateBatchFiles/heuristicMethodNPBootstrap.bf %%DATADIR%%/TemplateBatchFiles/last.date +%%DATADIR%%/TemplateBatchFiles/lib/label-tree.bf +%%DATADIR%%/TemplateBatchFiles/lib/remove-duplicates.bf +%%DATADIR%%/TemplateBatchFiles/lib/trim-label-tree.bf +%%DATADIR%%/TemplateBatchFiles/lib/trim-tree.bf %%DATADIR%%/TemplateBatchFiles/libv3/IOFunctions.bf %%DATADIR%%/TemplateBatchFiles/libv3/UtilityFunctions.bf %%DATADIR%%/TemplateBatchFiles/libv3/all-terms.bf @@ -393,6 +398,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf +%%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES_BSREL.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MSS.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/frequencies.bf @@ -421,6 +427,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/libv3/tasks/mpi.bf %%DATADIR%%/TemplateBatchFiles/libv3/tasks/trees.bf %%DATADIR%%/TemplateBatchFiles/molclockBootstrap.bf +%%DATADIR%%/TemplateBatchFiles/molerate.bf %%DATADIR%%/TemplateBatchFiles/pairwiseDistanceEstimator.ibf %%DATADIR%%/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf %%DATADIR%%/TemplateBatchFiles/partitionSequences.ibf |