diff options
Diffstat (limited to 'biology/fastp/files')
| -rw-r--r-- | biology/fastp/files/patch-Makefile | 15 |
1 files changed, 9 insertions, 6 deletions
diff --git a/biology/fastp/files/patch-Makefile b/biology/fastp/files/patch-Makefile index 5e68e39804a1..09efd133c6d8 100644 --- a/biology/fastp/files/patch-Makefile +++ b/biology/fastp/files/patch-Makefile @@ -1,4 +1,4 @@ ---- Makefile.orig 2025-04-16 10:13:35 UTC +--- Makefile.orig 2025-06-06 00:03:48 UTC +++ Makefile @@ -7,6 +7,8 @@ LIBRARY_DIRS ?= INCLUDE_DIRS ?= @@ -9,14 +9,15 @@ SRC := $(wildcard ${DIR_SRC}/*.cpp) OBJ := $(patsubst %.cpp,${DIR_OBJ}/%.o,$(notdir ${SRC})) -@@ -15,15 +17,20 @@ CXX ?= g++ +@@ -15,15 +17,21 @@ CXX ?= g++ BIN_TARGET := ${TARGET} CXX ?= g++ -CXXFLAGS := -std=c++11 -pthread -g -O3 -MD -MP -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir)) ${CXXFLAGS} +# Optional flags that the user can override by setting CXXFLAGS in the -+# env or make argument -+CXXFLAGS ?= -g -O3 ++# env or make argument. -pthread is a link flag, and serves no purpose ++# in the compile command. It is handled by -lpthread in LIBS. ++CXXFLAGS ?= -g -O3 -MD -MP +# Required flags +CXXFLAGS += -std=c++11 -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir)) LIBS := -lisal -ldeflate -lpthread @@ -33,11 +34,13 @@ static:${OBJ} $(CXX) $(OBJ) -o ${BIN_TARGET} $(STATIC_LD_FLAGS) -@@ -38,8 +45,13 @@ clean: +@@ -38,8 +46,15 @@ clean: @rm -rf $(DIR_OBJ) @rm -f $(TARGET) -+# Respect DESTDIR for staged installs (used by most package managers) ++# Respect DESTDIR for staged installs (used by most package managers). ++# DESTDIR is empty by default, so this will install directly to BINDIR ++# unless DESTDIR is supplied by the user. install: - install $(TARGET) $(BINDIR)/$(TARGET) + install $(TARGET) $(DESTDIR)$(BINDIR)/$(TARGET) |