diff options
Diffstat (limited to 'biology/bolt-lmm/files/patch-src_SnpData.cpp')
| -rw-r--r-- | biology/bolt-lmm/files/patch-src_SnpData.cpp | 20 |
1 files changed, 0 insertions, 20 deletions
diff --git a/biology/bolt-lmm/files/patch-src_SnpData.cpp b/biology/bolt-lmm/files/patch-src_SnpData.cpp deleted file mode 100644 index 5763ee62879c..000000000000 --- a/biology/bolt-lmm/files/patch-src_SnpData.cpp +++ /dev/null @@ -1,20 +0,0 @@ ---- src/SnpData.cpp.orig 2019-08-03 00:23:17 UTC -+++ src/SnpData.cpp -@@ -996,7 +996,7 @@ namespace LMM { - for (int w = 0; w < W; w++) - if (isProximal(m, mp, windows[w].first, windows[w].second)) { - foundProximal = true; -- if (!isnan(r2)) { -+ if (!std::isnan(r2)) { - for (int a = 0; a < A; a++) { - double weight = pow((snps[mp].MAF * (1-snps[mp].MAF)), alphaMAFdeps[a]); - LDscores[w*A+a] += weight * r2; -@@ -1048,7 +1048,7 @@ namespace LMM { - if (snps[mp].chrom != snps[m].chrom) { - fillSnpRow(&mpRow[0], mp); - double r2 = compute_r2(&mRow[0], &mpRow[0], Nstride); -- if (!isnan(r2)) { -+ if (!std::isnan(r2)) { - totOffChrom_r2s += r2; - numOffChrom_r2s++; - } |