diff options
31 files changed, 292 insertions, 326 deletions
diff --git a/biology/hhsuite/Makefile b/biology/hhsuite/Makefile index 1130bb4ced3c..988e946f66b5 100644 --- a/biology/hhsuite/Makefile +++ b/biology/hhsuite/Makefile @@ -3,7 +3,7 @@ PORTNAME= hhsuite DISTVERSIONPREFIX= v DISTVERSION= 3.2.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology science MAINTAINER= yuri@FreeBSD.org @@ -12,8 +12,7 @@ COMMENT= Remote protein homology detection suite LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= openmpi>0:net/openmpi -RUN_DEPENDS= openmpi>0:net/openmpi +LIB_DEPENDS= libmpi.so:net/openmpi USES= cmake compiler:c++11-lang perl5 python shebangfix SHEBANG_GLOB= *.pl *.py diff --git a/math/dbcsr/Makefile b/math/dbcsr/Makefile index 976e2caecb35..3fe19ca60bb7 100644 --- a/math/dbcsr/Makefile +++ b/math/dbcsr/Makefile @@ -3,7 +3,7 @@ PORTNAME= dbcsr DISTVERSIONPREFIX= v DISTVERSION= 2.0.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-alugrid/Makefile b/math/dune-alugrid/Makefile index 73d345b2f6c0..ca76454e4434 100644 --- a/math/dune-alugrid/Makefile +++ b/math/dune-alugrid/Makefile @@ -3,6 +3,7 @@ PORTNAME= dune-alugrid DISTVERSIONPREFIX= v DISTVERSION= 2.6.0 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-common/Makefile b/math/dune-common/Makefile index 450c606eb25e..e161e943194a 100644 --- a/math/dune-common/Makefile +++ b/math/dune-common/Makefile @@ -3,7 +3,7 @@ PORTNAME= dune-common DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-geometry/Makefile b/math/dune-geometry/Makefile index 388609f567da..4f9714e30daa 100644 --- a/math/dune-geometry/Makefile +++ b/math/dune-geometry/Makefile @@ -3,7 +3,7 @@ PORTNAME= dune-geometry DISTVERSIONPREFIX= v DISTVERSION= 2.7.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-grid/Makefile b/math/dune-grid/Makefile index c5f7a56c8ab1..e6b063499425 100644 --- a/math/dune-grid/Makefile +++ b/math/dune-grid/Makefile @@ -3,7 +3,7 @@ PORTNAME= dune-grid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-spgrid/Makefile b/math/dune-spgrid/Makefile index 9febd761789f..f71fe483aad3 100644 --- a/math/dune-spgrid/Makefile +++ b/math/dune-spgrid/Makefile @@ -3,6 +3,7 @@ PORTNAME= dune-spgrid DISTVERSIONPREFIX= v DISTVERSION= 2.6.0rc1.20200105 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-typetree/Makefile b/math/dune-typetree/Makefile index b647f87ed5ff..2c54a9829fa0 100644 --- a/math/dune-typetree/Makefile +++ b/math/dune-typetree/Makefile @@ -3,7 +3,7 @@ PORTNAME= dune-typetree DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/dune-uggrid/Makefile b/math/dune-uggrid/Makefile index 1e1d909271f7..ffed475ecabd 100644 --- a/math/dune-uggrid/Makefile +++ b/math/dune-uggrid/Makefile @@ -3,7 +3,7 @@ PORTNAME= dune-uggrid DISTVERSIONPREFIX= v DISTVERSION= 2.7.0rc2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/fftw3/Makefile b/math/fftw3/Makefile index 7492d50d8166..8d1a359849de 100644 --- a/math/fftw3/Makefile +++ b/math/fftw3/Makefile @@ -3,7 +3,7 @@ PORTNAME= fftw3 DISTVERSION= 3.3.8 -PORTREVISION?= 5 +PORTREVISION?= 6 CATEGORIES= math MASTER_SITES= http://www.fftw.org/ \ ftp://ftp.fftw.org/pub/fftw/ diff --git a/math/form/Makefile b/math/form/Makefile index ade085287362..0c59828b6ad1 100644 --- a/math/form/Makefile +++ b/math/form/Makefile @@ -3,6 +3,7 @@ PORTNAME= form PORTVERSION= 4.2.1 +PORTREVISION= 1 DISTVERSIONPREFIX= v CATEGORIES= math diff --git a/math/mathgl/Makefile b/math/mathgl/Makefile index 1d888d66280b..22aefb096896 100644 --- a/math/mathgl/Makefile +++ b/math/mathgl/Makefile @@ -2,7 +2,7 @@ PORTNAME= mathgl DISTVERSION= 2.4.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/ diff --git a/math/moab/Makefile b/math/moab/Makefile index 8babc710baa0..a1eb3e0dbc55 100644 --- a/math/moab/Makefile +++ b/math/moab/Makefile @@ -2,6 +2,7 @@ PORTNAME= moab DISTVERSION= 5.1.1 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= https://bitbucket.org/${BB_ACCOUNT}/${BB_PROJECT}/get/${BB_COMMIT}.tar.gz?dummy=/ @@ -18,7 +19,8 @@ LIB_DEPENDS= libhdf5.so:science/hdf5 \ USES= cmake:noninja compiler:c++11-lang eigen:3 fortran USE_LDCONFIG= yes -CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so +CMAKE_ARGS= -DBLAS_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so \ + -DLAPACK_LIBRARIES:STRING=${LOCALBASE}/lib/libopenblas.so BB_ACCOUNT= fathomteam BB_PROJECT= ${PORTNAME} diff --git a/math/parmgridgen/Makefile b/math/parmgridgen/Makefile index 0018da42a27d..596870424ac8 100644 --- a/math/parmgridgen/Makefile +++ b/math/parmgridgen/Makefile @@ -3,7 +3,7 @@ PORTNAME= parmgridgen PORTVERSION= 1.0 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= math science MASTER_SITES= http://www.mgnet.org/mgnet/Codes/parmgridgen/ \ http://www-users.cs.umn.edu/~moulitsa/download/ \ diff --git a/math/vtk8/Makefile b/math/vtk8/Makefile index 29f2863f7338..10250e6de756 100644 --- a/math/vtk8/Makefile +++ b/math/vtk8/Makefile @@ -2,7 +2,7 @@ PORTNAME= vtk DISTVERSION= 8.1.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= math graphics MASTER_SITES= http://www.vtk.org/files/release/${VTK_SHORT_VER}/ PKGNAMESUFFIX= 8 diff --git a/misc/adios2/Makefile b/misc/adios2/Makefile index 221af4d31432..6f7348a025eb 100644 --- a/misc/adios2/Makefile +++ b/misc/adios2/Makefile @@ -3,6 +3,7 @@ PORTNAME= adios2 DISTVERSIONPREFIX= v DISTVERSION= 2.5.0 +PORTREVISION= 1 CATEGORIES= misc science MAINTAINER= yuri@FreeBSD.org diff --git a/net/aluminum/Makefile b/net/aluminum/Makefile index 81e3f370283d..df061b73cda5 100644 --- a/net/aluminum/Makefile +++ b/net/aluminum/Makefile @@ -3,7 +3,7 @@ PORTNAME= Aluminum DISTVERSIONPREFIX= v DISTVERSION= 0.3.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= net MAINTAINER= yuri@FreeBSD.org diff --git a/net/openmpi/Makefile b/net/openmpi/Makefile index d311e33ccad5..c90130f016db 100644 --- a/net/openmpi/Makefile +++ b/net/openmpi/Makefile @@ -1,11 +1,7 @@ # $FreeBSD$ -# TODO: -# - etc/*.sample support - PORTNAME= openmpi -PORTVERSION= 1.10.7 -PORTREVISION= 7 +PORTVERSION= 4.0.3 CATEGORIES= net parallel MASTER_SITES= http://www.open-mpi.org/software/ompi/v${PORTVERSION:R}/downloads/ @@ -15,15 +11,20 @@ COMMENT= High Performance Message Passing Library LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +BROKEN_armv6= fails to package: pkg-static: mca_patcher_overwrite.la: No such file or directory +BROKEN_armv7= fails to package: pkg-static: mca_patcher_overwrite.la: No such file or directory +BROKEN_sparc64= fails to compile on sparc64 + LIB_DEPENDS= libhwloc.so:devel/hwloc \ libltdl.so:devel/libltdl \ - libevent.so:devel/libevent + libevent.so:devel/libevent \ + libmunge.so:security/munge -HAS_CONFIGURE= yes -INSTALL_TARGET= install-strip # :keepla because port uses lt_dlopen -USES= compiler:c11 fortran gmake libtool:keepla perl5 pkgconfig \ - tar:bzip2 +USES= fortran gmake libtool:keepla localbase perl5 \ + pkgconfig shebangfix tar:bzip2 + +HAS_CONFIGURE= yes USE_PERL5= build MPIBASE?= mpi @@ -32,33 +33,45 @@ MPIDIR?= ${MPIBASE}/${PKGBASE} PLIST_SUB+= MPIBASE=${MPIBASE} PLIST_SUB+= MPIDIR=${MPIDIR} +# Workaround for https://github.com/open-mpi/ompi/issues/7516 +CONFIGURE_ENV+= DISABLE_gds_ds12=1 DISABLE_gds_ds21=1 + CONFIGURE_ARGS+= --prefix=${PREFIX}/${MPIDIR} \ --mandir=${PREFIX}/${MPIDIR}/man \ --program-prefix= \ - --with-hwloc=${LOCALBASE} \ - --with-libltdl=${LOCALBASE} \ + --with-hwloc=external \ + --with-libltdl \ --enable-mpi-fortran=usempi \ + --enable-mpi-cxx \ + --enable-cxx-exceptions \ + --enable-mpi-thread-multiple \ --with-libevent=external \ + --enable-mca-no-build=verbs,btl_openib,oob_ud \ + --without-verbs \ --with-wrapper-ldflags=-Wl,-rpath=-Wl,-rpath=${LOCALBASE}/lib/gcc${_GCC_VER} \ ompi_cv_fortran_ignore_tkr_data=0 -LDFLAGS+= -L${LOCALBASE}/lib USE_LDCONFIG= ${PREFIX}/${MPIDIR}/lib \ ${PREFIX}/${MPIDIR}/lib/openmpi MANPREFIX= ${PREFIX}/${MPIDIR} -OPTIONS_DEFINE= IPV6 SLURM TORQUE VT +SHEBANG_FILES= ompi/mca/common/monitoring/profile2mat.pl \ + ompi/mca/common/monitoring/aggregate_profile.pl + +OPTIONS_DEFINE= DEBUG IPV6 SLURM TORQUE TORQUE_DESC= Enable Torque support SLURM_DESC= Enable SLURM support -VT_DESC= Enable VampirTrace support OPTIONS_DEFAULT= SLURM +OPTIONS_EXCLUDE_i386= SLURM OPTIONS_SUB= yes +DEBUG_CONFIGURE_ENABLE= debug +DEBUG_INSTALL_TARGET_OFF= install-strip + IPV6_CONFIGURE_ENABLE= ipv6 -TORQUE_CONFIGURE_ON= --with-tm=${LOCALBASE} -TORQUE_CONFIGURE_OFF= --without-tm +TORQUE_CONFIGURE_WITH= tm TORQUE_LIB_DEPENDS= libtorque.so:sysutils/torque TORQUE_PLIST_FILES= ${MPIDIR}/lib/openmpi/mca_plm_tm.so \ ${MPIDIR}/lib/openmpi/mca_plm_tm.la \ @@ -77,12 +90,20 @@ SLURM_PLIST_FILES= ${MPIDIR}/lib/openmpi/mca_ess_slurm.la \ ${MPIDIR}/lib/openmpi/mca_plm_slurm.so \ ${MPIDIR}/lib/openmpi/mca_ras_slurm.la \ ${MPIDIR}/lib/openmpi/mca_ras_slurm.so \ + ${MPIDIR}/lib/openmpi/mca_schizo_slurm.la \ + ${MPIDIR}/lib/openmpi/mca_schizo_slurm.so \ ${MPIDIR}/share/openmpi/help-plm-slurm.txt \ ${MPIDIR}/share/openmpi/help-ras-slurm.txt -VT_CONFIGURE_OFF= --enable-contrib-no-build=vt --disable-vt -VT_USE= JAVA=yes - -BROKEN_sparc64= Does not compile on sparc64 +post-patch: + @${REINPLACE_CMD} -e 's|$$(libdir)/pkgconfig|${PREFIX}/${MPIDIR}/libdata/pkgconfig|g' \ + ${WRKSRC}/ompi/tools/wrappers/Makefile.am \ + ${WRKSRC}/ompi/tools/wrappers/Makefile.in \ + ${WRKSRC}/opal/tools/wrappers/Makefile.am \ + ${WRKSRC}/opal/tools/wrappers/Makefile.in \ + ${WRKSRC}/orte/tools/wrappers/Makefile.am \ + ${WRKSRC}/orte/tools/wrappers/Makefile.in + @${REINPLACE_CMD} 's|define MCA_hwloc_external_.*header "|&${LOCALBASE}/include/|' \ + ${WRKSRC}/configure .include <bsd.port.mk> diff --git a/net/openmpi/distinfo b/net/openmpi/distinfo index 76986bf4eb6f..e5a6269508ff 100644 --- a/net/openmpi/distinfo +++ b/net/openmpi/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1497724776 -SHA256 (openmpi-1.10.7.tar.bz2) = a089ece151fec974905caa35b0a59039b227bdea4e7933069e94bee4ed0e5a90 -SIZE (openmpi-1.10.7.tar.bz2) = 13435131 +TIMESTAMP = 1586692006 +SHA256 (openmpi-4.0.3.tar.bz2) = 1402feced8c3847b3ab8252165b90f7d1fa28c23b6b2ca4632b6e4971267fd03 +SIZE (openmpi-4.0.3.tar.bz2) = 9856669 diff --git a/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c b/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c new file mode 100644 index 000000000000..2718655bf401 --- /dev/null +++ b/net/openmpi/files/patch-opal_mca_pmix_pmix3x_pmix_src_mca_pshmem_mmap_pshmem__mmap.c @@ -0,0 +1,20 @@ +--- opal/mca/pmix/pmix3x/pmix/src/mca/pshmem/mmap/pshmem_mmap.c.orig 2020-04-12 11:49:10 UTC ++++ opal/mca/pmix/pmix3x/pmix/src/mca/pshmem/mmap/pshmem_mmap.c +@@ -79,6 +79,9 @@ static int _mmap_segment_create(pmix_pshmem_seg_t *sm_ + if (0 != (rc = posix_fallocate(sm_seg->seg_id, 0, size))) { + pmix_output_verbose(2, pmix_globals.debug_output, + "sys call posix_fallocate(2) fail\n"); ++ if (EINVAL == rc) { ++ goto ftruncate; ++ } + if (ENOSPC == rc) { + rc = PMIX_ERR_OUT_OF_RESOURCE; + goto out; +@@ -98,6 +101,7 @@ static int _mmap_segment_create(pmix_pshmem_seg_t *sm_ + goto map_memory; + } + #endif ++ftruncate: + if (0 != ftruncate(sm_seg->seg_id, size)) { + pmix_output_verbose(2, pmix_globals.debug_output, + "sys call ftruncate(2) fail\n"); diff --git a/net/openmpi/pkg-plist b/net/openmpi/pkg-plist index 48b0a17da6ea..4bab824f21d6 100644 --- a/net/openmpi/pkg-plist +++ b/net/openmpi/pkg-plist @@ -1,3 +1,4 @@ +%%MPIDIR%%/bin/aggregate_profile.pl %%MPIDIR%%/bin/mpiCC %%MPIDIR%%/bin/mpic++ %%MPIDIR%%/bin/mpicc @@ -8,174 +9,24 @@ %%MPIDIR%%/bin/mpifort %%MPIDIR%%/bin/mpirun %%MPIDIR%%/bin/ompi-clean -%%MPIDIR%%/bin/ompi-ps %%MPIDIR%%/bin/ompi-server -%%MPIDIR%%/bin/ompi-top %%MPIDIR%%/bin/ompi_info %%MPIDIR%%/bin/opal_wrapper %%MPIDIR%%/bin/orte-clean -%%MPIDIR%%/bin/orte-dvm %%MPIDIR%%/bin/orte-info -%%MPIDIR%%/bin/orte-ps %%MPIDIR%%/bin/orte-server -%%MPIDIR%%/bin/orte-submit -%%MPIDIR%%/bin/orte-top %%MPIDIR%%/bin/ortecc -%%MPIDIR%%/bin/orterun %%MPIDIR%%/bin/orted -%%VT%%%%MPIDIR%%/bin/mpiCC-vt -%%VT%%%%MPIDIR%%/bin/mpic++-vt -%%VT%%%%MPIDIR%%/bin/mpicc-vt -%%VT%%%%MPIDIR%%/bin/mpicxx-vt -%%VT%%%%MPIDIR%%/bin/mpif77-vt -%%VT%%%%MPIDIR%%/bin/mpif90-vt -%%VT%%%%MPIDIR%%/bin/mpifort-vt -%%VT%%%%MPIDIR%%/bin/otfaux -%%VT%%%%MPIDIR%%/bin/otfcompress -%%VT%%%%MPIDIR%%/bin/otfconfig -%%VT%%%%MPIDIR%%/bin/otfdecompress -%%VT%%%%MPIDIR%%/bin/otfinfo -%%VT%%%%MPIDIR%%/bin/otfmerge -%%VT%%%%MPIDIR%%/bin/otfmerge-mpi -%%VT%%%%MPIDIR%%/bin/otfprint -%%VT%%%%MPIDIR%%/bin/otfprofile -%%VT%%%%MPIDIR%%/bin/otfprofile-mpi -%%VT%%%%MPIDIR%%/bin/otfshrink -%%VT%%%%MPIDIR%%/bin/vtCC -%%VT%%%%MPIDIR%%/bin/vtc++ -%%VT%%%%MPIDIR%%/bin/vtcc -%%VT%%%%MPIDIR%%/bin/vtcxx -%%VT%%%%MPIDIR%%/bin/vtf77 -%%VT%%%%MPIDIR%%/bin/vtf90 -%%VT%%%%MPIDIR%%/bin/vtfilter -%%VT%%%%MPIDIR%%/bin/vtfilter-mpi -%%VT%%%%MPIDIR%%/bin/vtfiltergen -%%VT%%%%MPIDIR%%/bin/vtfiltergen-mpi -%%VT%%%%MPIDIR%%/bin/vtfort -%%VT%%%%MPIDIR%%/bin/vtrun -%%VT%%%%MPIDIR%%/bin/vtsetup -%%VT%%%%MPIDIR%%/bin/vtsetup.jar -%%VT%%%%MPIDIR%%/bin/vtunify -%%VT%%%%MPIDIR%%/bin/vtunify-mpi -%%VT%%%%MPIDIR%%/bin/vtwrapper -%%VT%%%%MPIDIR%%/etc/vtsetup-config.dtd -%%VT%%%%MPIDIR%%/etc/vtsetup-config.xml -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_MsgMatching.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_State.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTFAUX_Thumbnail.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_CopyHandler.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_CopyHandler_stream.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Definitions.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Errno.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_File.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_FileManager.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_File_iofsl.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Filenames.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_HandlerArray.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_KeyValue.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_MasterControl.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_RBuffer.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_RStream.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Reader.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Version.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_WBuffer.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_WStream.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_Writer.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_inttypes.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/OTF_inttypes_unix.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/otf.h -%%VT%%%%MPIDIR%%/include/vampirtrace/open-trace-format/otfaux.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_inttypes.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_comment.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_comment.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_control.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_control.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_count.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_count.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_marker.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_marker.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_message.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_message.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_region.h -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_user_region.inc -%%VT%%%%MPIDIR%%/include/vampirtrace/vt_wrap_pthread.h -%%VT%%%%MPIDIR%%/lib/libopen-trace-format.a -%%VT%%%%MPIDIR%%/lib/libopen-trace-format.la -%%VT%%%%MPIDIR%%/lib/libopen-trace-format.so -%%VT%%%%MPIDIR%%/lib/libopen-trace-format.so.1 -%%VT%%%%MPIDIR%%/lib/libopen-trace-format.so.1.0.0 -%%VT%%%%MPIDIR%%/lib/libotfaux.a -%%VT%%%%MPIDIR%%/lib/libotfaux.la -%%VT%%%%MPIDIR%%/lib/libotfaux.so -%%VT%%%%MPIDIR%%/lib/libotfaux.so.0 -%%VT%%%%MPIDIR%%/lib/libotfaux.so.0.0.0 -%%VT%%%%MPIDIR%%/lib/libvt-hyb.a -%%VT%%%%MPIDIR%%/lib/libvt-hyb.la -%%VT%%%%MPIDIR%%/lib/libvt-hyb.so -%%VT%%%%MPIDIR%%/lib/libvt-hyb.so.0 -%%VT%%%%MPIDIR%%/lib/libvt-hyb.so.0.0.0 -%%VT%%%%MPIDIR%%/lib/libvt-mpi-unify.a -%%VT%%%%MPIDIR%%/lib/libvt-mpi-unify.la -%%VT%%%%MPIDIR%%/lib/libvt-mpi-unify.so -%%VT%%%%MPIDIR%%/lib/libvt-mpi-unify.so.0 -%%VT%%%%MPIDIR%%/lib/libvt-mpi-unify.so.0.0.0 -%%VT%%%%MPIDIR%%/lib/libvt-mpi.a -%%VT%%%%MPIDIR%%/lib/libvt-mpi.la -%%VT%%%%MPIDIR%%/lib/libvt-mpi.so -%%VT%%%%MPIDIR%%/lib/libvt-mpi.so.0 -%%VT%%%%MPIDIR%%/lib/libvt-mpi.so.0.0.0 -%%VT%%%%MPIDIR%%/lib/libvt-mt.a -%%VT%%%%MPIDIR%%/lib/libvt-mt.la -%%VT%%%%MPIDIR%%/lib/libvt-mt.so -%%VT%%%%MPIDIR%%/lib/libvt-mt.so.0 -%%VT%%%%MPIDIR%%/lib/libvt-mt.so.0.0.0 -%%VT%%%%MPIDIR%%/lib/libvt.a -%%VT%%%%MPIDIR%%/lib/libvt.la -%%VT%%%%MPIDIR%%/lib/libvt.so -%%VT%%%%MPIDIR%%/lib/libvt.so.0 -%%VT%%%%MPIDIR%%/lib/libvt.so.0.0.0 -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpiCC-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpic++-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpicc-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpicxx-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpif77-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpif90-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/%%DATADIR%%/mpifort-vt-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/FILTER.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/GROUPS.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/METRICS.SPEC -%%VT%%%%MPIDIR%%/share/vampirtrace/config.log -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/UserManual.html -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/UserManual.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otfprofile.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otfprofile_clustering.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/otftools.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/otf/specification.pdf -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/vtsetup/ChangeLog -%%VT%%%%MPIDIR%%/share/vampirtrace/doc/vtsetup/LICENSE -%%VT%%%%MPIDIR%%/share/vampirtrace/libtool -%%VT%%%%MPIDIR%%/share/vampirtrace/omp.h -%%VT%%%%MPIDIR%%/share/vampirtrace/vtCC-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtc++-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtcc-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtcxx-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtf77-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtf90-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtfort-wrapper-data.txt -%%VT%%%%MPIDIR%%/share/vampirtrace/vtsetup-data.dtd -%%VT%%%%MPIDIR%%/share/vampirtrace/vtsetup-data.xml +%%MPIDIR%%/bin/orterun +%%MPIDIR%%/bin/profile2mat.pl %%MPIDIR%%/%%ETCDIR%%-default-hostfile %%MPIDIR%%/%%ETCDIR%%-mca-params.conf %%MPIDIR%%/%%ETCDIR%%-totalview.tcl +%%MPIDIR%%/etc/pmix-mca-params.conf %%MPIDIR%%/include/mpi-ext.h %%MPIDIR%%/include/mpi.h %%MPIDIR%%/include/mpi_portable_platform.h +%%MPIDIR%%/include/mpif-c-constants-decl.h %%MPIDIR%%/include/mpif-config.h %%MPIDIR%%/include/mpif-constants.h %%MPIDIR%%/include/mpif-ext.h @@ -186,9 +37,15 @@ %%MPIDIR%%/include/mpif-sentinels.h %%MPIDIR%%/include/mpif-sizeof.h %%MPIDIR%%/include/mpif.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_affinity_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_cuda_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_pcollreq_c.h +%%MPIDIR%%/include/openmpi/mpiext/mpiext_pcollreq_mpifh.h +%%MPIDIR%%/include/openmpi/mpiext/pmpiext_pcollreq_c.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/comm.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/comm_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/constants.h +%%MPIDIR%%/include/openmpi/ompi/mpi/cxx/cxx_glue.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/datatype.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/datatype_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/errhandler.h @@ -217,49 +74,59 @@ %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/topology_inln.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/win.h %%MPIDIR%%/include/openmpi/ompi/mpi/cxx/win_inln.h +%%MPIDIR%%/lib/libmca_common_dstore.la +%%MPIDIR%%/lib/libmca_common_dstore.so +%%MPIDIR%%/lib/libmca_common_dstore.so.1 +%%MPIDIR%%/lib/libmca_common_dstore.so.1.0.2 +%%MPIDIR%%/lib/libmca_common_monitoring.la +%%MPIDIR%%/lib/libmca_common_monitoring.so +%%MPIDIR%%/lib/libmca_common_monitoring.so.50 +%%MPIDIR%%/lib/libmca_common_monitoring.so.50.10.0 +%%MPIDIR%%/lib/libmca_common_ompio.la +%%MPIDIR%%/lib/libmca_common_ompio.so +%%MPIDIR%%/lib/libmca_common_ompio.so.41 +%%MPIDIR%%/lib/libmca_common_ompio.so.41.19.3 %%MPIDIR%%/lib/libmca_common_sm.la %%MPIDIR%%/lib/libmca_common_sm.so -%%MPIDIR%%/lib/libmca_common_sm.so.4 -%%MPIDIR%%/lib/libmca_common_sm.so.4.0.4 +%%MPIDIR%%/lib/libmca_common_sm.so.40 +%%MPIDIR%%/lib/libmca_common_sm.so.40.20.0 %%MPIDIR%%/lib/libmpi.la %%MPIDIR%%/lib/libmpi.so -%%MPIDIR%%/lib/libmpi.so.12 -%%MPIDIR%%/lib/libmpi.so.12.0.7 +%%MPIDIR%%/lib/libmpi.so.40 +%%MPIDIR%%/lib/libmpi.so.40.20.3 %%MPIDIR%%/lib/libmpi_cxx.la %%MPIDIR%%/lib/libmpi_cxx.so -%%MPIDIR%%/lib/libmpi_cxx.so.1 -%%MPIDIR%%/lib/libmpi_cxx.so.1.1.3 +%%MPIDIR%%/lib/libmpi_cxx.so.40 +%%MPIDIR%%/lib/libmpi_cxx.so.40.20.1 %%MPIDIR%%/lib/libmpi_mpifh.la %%MPIDIR%%/lib/libmpi_mpifh.so -%%MPIDIR%%/lib/libmpi_mpifh.so.12 -%%MPIDIR%%/lib/libmpi_mpifh.so.12.0.1 +%%MPIDIR%%/lib/libmpi_mpifh.so.40 +%%MPIDIR%%/lib/libmpi_mpifh.so.40.20.2 %%MPIDIR%%/lib/libmpi_usempi.la %%MPIDIR%%/lib/libmpi_usempi.so -%%MPIDIR%%/lib/libmpi_usempi.so.5 -%%MPIDIR%%/lib/libmpi_usempi.so.5.2.0 +%%MPIDIR%%/lib/libmpi_usempi.so.40 +%%MPIDIR%%/lib/libmpi_usempi.so.40.20.0 %%MPIDIR%%/lib/libompitrace.la %%MPIDIR%%/lib/libompitrace.so -%%MPIDIR%%/lib/libompitrace.so.0 -%%MPIDIR%%/lib/libompitrace.so.0.0.0 +%%MPIDIR%%/lib/libompitrace.so.40 +%%MPIDIR%%/lib/libompitrace.so.40.20.0 %%MPIDIR%%/lib/libopen-pal.la %%MPIDIR%%/lib/libopen-pal.so -%%MPIDIR%%/lib/libopen-pal.so.13 -%%MPIDIR%%/lib/libopen-pal.so.13.0.4 +%%MPIDIR%%/lib/libopen-pal.so.40 +%%MPIDIR%%/lib/libopen-pal.so.40.20.3 %%MPIDIR%%/lib/libopen-rte.la %%MPIDIR%%/lib/libopen-rte.so -%%MPIDIR%%/lib/libopen-rte.so.12 -%%MPIDIR%%/lib/libopen-rte.so.12.0.4 +%%MPIDIR%%/lib/libopen-rte.so.40 +%%MPIDIR%%/lib/libopen-rte.so.40.20.3 %%MPIDIR%%/lib/mpi.mod +%%MPIDIR%%/lib/ompi_monitoring_prof.la +%%MPIDIR%%/lib/ompi_monitoring_prof.so %%MPIDIR%%/lib/openmpi/libompi_dbg_msgq.la %%MPIDIR%%/lib/openmpi/libompi_dbg_msgq.so %%MPIDIR%%/lib/openmpi/mca_allocator_basic.la %%MPIDIR%%/lib/openmpi/mca_allocator_basic.so %%MPIDIR%%/lib/openmpi/mca_allocator_bucket.la %%MPIDIR%%/lib/openmpi/mca_allocator_bucket.so -%%MPIDIR%%/lib/openmpi/mca_bcol_basesmuma.la -%%MPIDIR%%/lib/openmpi/mca_bcol_basesmuma.so -%%MPIDIR%%/lib/openmpi/mca_bcol_ptpcoll.la -%%MPIDIR%%/lib/openmpi/mca_bcol_ptpcoll.so %%MPIDIR%%/lib/openmpi/mca_bml_r2.la %%MPIDIR%%/lib/openmpi/mca_bml_r2.so %%MPIDIR%%/lib/openmpi/mca_btl_self.la @@ -272,14 +139,12 @@ %%MPIDIR%%/lib/openmpi/mca_btl_vader.so %%MPIDIR%%/lib/openmpi/mca_coll_basic.la %%MPIDIR%%/lib/openmpi/mca_coll_basic.so -%%MPIDIR%%/lib/openmpi/mca_coll_hierarch.la -%%MPIDIR%%/lib/openmpi/mca_coll_hierarch.so %%MPIDIR%%/lib/openmpi/mca_coll_inter.la %%MPIDIR%%/lib/openmpi/mca_coll_inter.so %%MPIDIR%%/lib/openmpi/mca_coll_libnbc.la %%MPIDIR%%/lib/openmpi/mca_coll_libnbc.so -%%MPIDIR%%/lib/openmpi/mca_coll_ml.la -%%MPIDIR%%/lib/openmpi/mca_coll_ml.so +%%MPIDIR%%/lib/openmpi/mca_coll_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_coll_monitoring.so %%MPIDIR%%/lib/openmpi/mca_coll_self.la %%MPIDIR%%/lib/openmpi/mca_coll_self.so %%MPIDIR%%/lib/openmpi/mca_coll_sm.la @@ -294,18 +159,6 @@ %%MPIDIR%%/lib/openmpi/mca_compress_gzip.so %%MPIDIR%%/lib/openmpi/mca_crs_none.la %%MPIDIR%%/lib/openmpi/mca_crs_none.so -%%MPIDIR%%/lib/openmpi/mca_db_hash.la -%%MPIDIR%%/lib/openmpi/mca_db_hash.so -%%MPIDIR%%/lib/openmpi/mca_db_print.la -%%MPIDIR%%/lib/openmpi/mca_db_print.so -%%MPIDIR%%/lib/openmpi/mca_dfs_app.la -%%MPIDIR%%/lib/openmpi/mca_dfs_app.so -%%MPIDIR%%/lib/openmpi/mca_dfs_orted.la -%%MPIDIR%%/lib/openmpi/mca_dfs_orted.so -%%MPIDIR%%/lib/openmpi/mca_dfs_test.la -%%MPIDIR%%/lib/openmpi/mca_dfs_test.so -%%MPIDIR%%/lib/openmpi/mca_dpm_orte.la -%%MPIDIR%%/lib/openmpi/mca_dpm_orte.so %%MPIDIR%%/lib/openmpi/mca_errmgr_default_app.la %%MPIDIR%%/lib/openmpi/mca_errmgr_default_app.so %%MPIDIR%%/lib/openmpi/mca_errmgr_default_hnp.la @@ -318,6 +171,8 @@ %%MPIDIR%%/lib/openmpi/mca_ess_env.so %%MPIDIR%%/lib/openmpi/mca_ess_hnp.la %%MPIDIR%%/lib/openmpi/mca_ess_hnp.so +%%MPIDIR%%/lib/openmpi/mca_ess_pmi.la +%%MPIDIR%%/lib/openmpi/mca_ess_pmi.so %%MPIDIR%%/lib/openmpi/mca_ess_singleton.la %%MPIDIR%%/lib/openmpi/mca_ess_singleton.so %%MPIDIR%%/lib/openmpi/mca_ess_tool.la @@ -326,64 +181,78 @@ %%MPIDIR%%/lib/openmpi/mca_fbtl_posix.so %%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic.la %%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic.so +%%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic_gen2.la +%%MPIDIR%%/lib/openmpi/mca_fcoll_dynamic_gen2.so %%MPIDIR%%/lib/openmpi/mca_fcoll_individual.la %%MPIDIR%%/lib/openmpi/mca_fcoll_individual.so -%%MPIDIR%%/lib/openmpi/mca_fcoll_static.la -%%MPIDIR%%/lib/openmpi/mca_fcoll_static.so %%MPIDIR%%/lib/openmpi/mca_fcoll_two_phase.la %%MPIDIR%%/lib/openmpi/mca_fcoll_two_phase.so -%%MPIDIR%%/lib/openmpi/mca_fcoll_ylib.la -%%MPIDIR%%/lib/openmpi/mca_fcoll_ylib.so +%%MPIDIR%%/lib/openmpi/mca_fcoll_vulcan.la +%%MPIDIR%%/lib/openmpi/mca_fcoll_vulcan.so %%MPIDIR%%/lib/openmpi/mca_filem_raw.la %%MPIDIR%%/lib/openmpi/mca_filem_raw.so %%MPIDIR%%/lib/openmpi/mca_fs_ufs.la %%MPIDIR%%/lib/openmpi/mca_fs_ufs.so -%%MPIDIR%%/lib/openmpi/mca_grpcomm_bad.la -%%MPIDIR%%/lib/openmpi/mca_grpcomm_bad.so +%%MPIDIR%%/lib/openmpi/mca_grpcomm_direct.la +%%MPIDIR%%/lib/openmpi/mca_grpcomm_direct.so %%MPIDIR%%/lib/openmpi/mca_io_ompio.la %%MPIDIR%%/lib/openmpi/mca_io_ompio.so -%%MPIDIR%%/lib/openmpi/mca_io_romio.la -%%MPIDIR%%/lib/openmpi/mca_io_romio.so +%%MPIDIR%%/lib/openmpi/mca_io_romio321.la +%%MPIDIR%%/lib/openmpi/mca_io_romio321.so %%MPIDIR%%/lib/openmpi/mca_iof_hnp.la %%MPIDIR%%/lib/openmpi/mca_iof_hnp.so -%%MPIDIR%%/lib/openmpi/mca_iof_mr_hnp.la -%%MPIDIR%%/lib/openmpi/mca_iof_mr_hnp.so -%%MPIDIR%%/lib/openmpi/mca_iof_mr_orted.la -%%MPIDIR%%/lib/openmpi/mca_iof_mr_orted.so %%MPIDIR%%/lib/openmpi/mca_iof_orted.la %%MPIDIR%%/lib/openmpi/mca_iof_orted.so %%MPIDIR%%/lib/openmpi/mca_iof_tool.la %%MPIDIR%%/lib/openmpi/mca_iof_tool.so -%%MPIDIR%%/lib/openmpi/mca_mpool_grdma.la -%%MPIDIR%%/lib/openmpi/mca_mpool_grdma.so -%%MPIDIR%%/lib/openmpi/mca_mpool_sm.la -%%MPIDIR%%/lib/openmpi/mca_mpool_sm.so +%%MPIDIR%%/lib/openmpi/mca_mpool_hugepage.la +%%MPIDIR%%/lib/openmpi/mca_mpool_hugepage.so %%MPIDIR%%/lib/openmpi/mca_odls_default.la %%MPIDIR%%/lib/openmpi/mca_odls_default.so +%%MPIDIR%%/lib/openmpi/mca_odls_pspawn.la +%%MPIDIR%%/lib/openmpi/mca_odls_pspawn.so %%MPIDIR%%/lib/openmpi/mca_oob_tcp.la %%MPIDIR%%/lib/openmpi/mca_oob_tcp.so +%%MPIDIR%%/lib/openmpi/mca_osc_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_osc_monitoring.so %%MPIDIR%%/lib/openmpi/mca_osc_pt2pt.la %%MPIDIR%%/lib/openmpi/mca_osc_pt2pt.so +%%MPIDIR%%/lib/openmpi/mca_osc_rdma.la +%%MPIDIR%%/lib/openmpi/mca_osc_rdma.so %%MPIDIR%%/lib/openmpi/mca_osc_sm.la %%MPIDIR%%/lib/openmpi/mca_osc_sm.so +%%MPIDIR%%/lib/openmpi/mca_patcher_overwrite.la +%%MPIDIR%%/lib/openmpi/mca_patcher_overwrite.so %%MPIDIR%%/lib/openmpi/mca_plm_isolated.la %%MPIDIR%%/lib/openmpi/mca_plm_isolated.so %%MPIDIR%%/lib/openmpi/mca_plm_rsh.la %%MPIDIR%%/lib/openmpi/mca_plm_rsh.so -%%MPIDIR%%/lib/openmpi/mca_pml_bfo.la -%%MPIDIR%%/lib/openmpi/mca_pml_bfo.so +%%MPIDIR%%/lib/openmpi/mca_pmix_flux.la +%%MPIDIR%%/lib/openmpi/mca_pmix_flux.so +%%MPIDIR%%/lib/openmpi/mca_pmix_isolated.la +%%MPIDIR%%/lib/openmpi/mca_pmix_isolated.so +%%MPIDIR%%/lib/openmpi/mca_pmix_pmix3x.la +%%MPIDIR%%/lib/openmpi/mca_pmix_pmix3x.so %%MPIDIR%%/lib/openmpi/mca_pml_cm.la %%MPIDIR%%/lib/openmpi/mca_pml_cm.so +%%MPIDIR%%/lib/openmpi/mca_pml_monitoring.la +%%MPIDIR%%/lib/openmpi/mca_pml_monitoring.so %%MPIDIR%%/lib/openmpi/mca_pml_ob1.la %%MPIDIR%%/lib/openmpi/mca_pml_ob1.so %%MPIDIR%%/lib/openmpi/mca_pstat_test.la %%MPIDIR%%/lib/openmpi/mca_pstat_test.so -%%MPIDIR%%/lib/openmpi/mca_pubsub_orte.la -%%MPIDIR%%/lib/openmpi/mca_pubsub_orte.so %%MPIDIR%%/lib/openmpi/mca_ras_simulator.la %%MPIDIR%%/lib/openmpi/mca_ras_simulator.so -%%MPIDIR%%/lib/openmpi/mca_rcache_vma.la -%%MPIDIR%%/lib/openmpi/mca_rcache_vma.so +%%MPIDIR%%/lib/openmpi/mca_rcache_grdma.la +%%MPIDIR%%/lib/openmpi/mca_rcache_grdma.so +%%MPIDIR%%/lib/openmpi/mca_reachable_weighted.la +%%MPIDIR%%/lib/openmpi/mca_reachable_weighted.so +%%MPIDIR%%/lib/openmpi/mca_regx_fwd.la +%%MPIDIR%%/lib/openmpi/mca_regx_fwd.so +%%MPIDIR%%/lib/openmpi/mca_regx_naive.la +%%MPIDIR%%/lib/openmpi/mca_regx_naive.so +%%MPIDIR%%/lib/openmpi/mca_regx_reverse.la +%%MPIDIR%%/lib/openmpi/mca_regx_reverse.so %%MPIDIR%%/lib/openmpi/mca_rmaps_mindist.la %%MPIDIR%%/lib/openmpi/mca_rmaps_mindist.so %%MPIDIR%%/lib/openmpi/mca_rmaps_ppr.la @@ -396,26 +265,22 @@ %%MPIDIR%%/lib/openmpi/mca_rmaps_round_robin.so %%MPIDIR%%/lib/openmpi/mca_rmaps_seq.la %%MPIDIR%%/lib/openmpi/mca_rmaps_seq.so -%%MPIDIR%%/lib/openmpi/mca_rmaps_staged.la -%%MPIDIR%%/lib/openmpi/mca_rmaps_staged.so %%MPIDIR%%/lib/openmpi/mca_rml_oob.la %%MPIDIR%%/lib/openmpi/mca_rml_oob.so %%MPIDIR%%/lib/openmpi/mca_routed_binomial.la %%MPIDIR%%/lib/openmpi/mca_routed_binomial.so -%%MPIDIR%%/lib/openmpi/mca_routed_debruijn.la -%%MPIDIR%%/lib/openmpi/mca_routed_debruijn.so %%MPIDIR%%/lib/openmpi/mca_routed_direct.la %%MPIDIR%%/lib/openmpi/mca_routed_direct.so %%MPIDIR%%/lib/openmpi/mca_routed_radix.la %%MPIDIR%%/lib/openmpi/mca_routed_radix.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmsocket.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmsocket.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmuma.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_basesmuma.so -%%MPIDIR%%/lib/openmpi/mca_sbgp_p2p.la -%%MPIDIR%%/lib/openmpi/mca_sbgp_p2p.so -%%MPIDIR%%/lib/openmpi/mca_sec_basic.la -%%MPIDIR%%/lib/openmpi/mca_sec_basic.so +%%MPIDIR%%/lib/openmpi/mca_rtc_hwloc.la +%%MPIDIR%%/lib/openmpi/mca_rtc_hwloc.so +%%MPIDIR%%/lib/openmpi/mca_schizo_flux.la +%%MPIDIR%%/lib/openmpi/mca_schizo_flux.so +%%MPIDIR%%/lib/openmpi/mca_schizo_ompi.la +%%MPIDIR%%/lib/openmpi/mca_schizo_ompi.so +%%MPIDIR%%/lib/openmpi/mca_schizo_orte.la +%%MPIDIR%%/lib/openmpi/mca_schizo_orte.so %%MPIDIR%%/lib/openmpi/mca_sharedfp_individual.la %%MPIDIR%%/lib/openmpi/mca_sharedfp_individual.so %%MPIDIR%%/lib/openmpi/mca_sharedfp_lockedfile.la @@ -430,31 +295,63 @@ %%MPIDIR%%/lib/openmpi/mca_shmem_sysv.so %%MPIDIR%%/lib/openmpi/mca_state_app.la %%MPIDIR%%/lib/openmpi/mca_state_app.so -%%MPIDIR%%/lib/openmpi/mca_state_dvm.la -%%MPIDIR%%/lib/openmpi/mca_state_dvm.so %%MPIDIR%%/lib/openmpi/mca_state_hnp.la %%MPIDIR%%/lib/openmpi/mca_state_hnp.so %%MPIDIR%%/lib/openmpi/mca_state_novm.la %%MPIDIR%%/lib/openmpi/mca_state_novm.so %%MPIDIR%%/lib/openmpi/mca_state_orted.la %%MPIDIR%%/lib/openmpi/mca_state_orted.so -%%MPIDIR%%/lib/openmpi/mca_state_staged_hnp.la -%%MPIDIR%%/lib/openmpi/mca_state_staged_hnp.so -%%MPIDIR%%/lib/openmpi/mca_state_staged_orted.la -%%MPIDIR%%/lib/openmpi/mca_state_staged_orted.so %%MPIDIR%%/lib/openmpi/mca_state_tool.la %%MPIDIR%%/lib/openmpi/mca_state_tool.so %%MPIDIR%%/lib/openmpi/mca_topo_basic.la %%MPIDIR%%/lib/openmpi/mca_topo_basic.so +%%MPIDIR%%/lib/openmpi/mca_topo_treematch.la +%%MPIDIR%%/lib/openmpi/mca_topo_treematch.so %%MPIDIR%%/lib/openmpi/mca_vprotocol_pessimist.la %%MPIDIR%%/lib/openmpi/mca_vprotocol_pessimist.so -%%MPIDIR%%/lib/pkgconfig/ompi-c.pc -%%MPIDIR%%/lib/pkgconfig/ompi-cxx.pc -%%MPIDIR%%/lib/pkgconfig/ompi-f77.pc -%%MPIDIR%%/lib/pkgconfig/ompi-f90.pc -%%MPIDIR%%/lib/pkgconfig/ompi-fort.pc -%%MPIDIR%%/lib/pkgconfig/ompi.pc -%%MPIDIR%%/lib/pkgconfig/orte.pc +%%MPIDIR%%/lib/pmix/mca_bfrops_v12.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v12.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v20.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v20.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v21.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v21.so +%%MPIDIR%%/lib/pmix/mca_bfrops_v3.la +%%MPIDIR%%/lib/pmix/mca_bfrops_v3.so +%%MPIDIR%%/lib/pmix/mca_gds_hash.la +%%MPIDIR%%/lib/pmix/mca_gds_hash.so +%%MPIDIR%%/lib/pmix/mca_plog_default.la +%%MPIDIR%%/lib/pmix/mca_plog_default.so +%%MPIDIR%%/lib/pmix/mca_plog_stdfd.la +%%MPIDIR%%/lib/pmix/mca_plog_stdfd.so +%%MPIDIR%%/lib/pmix/mca_plog_syslog.la +%%MPIDIR%%/lib/pmix/mca_plog_syslog.so +%%MPIDIR%%/lib/pmix/mca_pnet_tcp.la +%%MPIDIR%%/lib/pmix/mca_pnet_tcp.so +%%MPIDIR%%/lib/pmix/mca_pnet_test.la +%%MPIDIR%%/lib/pmix/mca_pnet_test.so +%%MPIDIR%%/lib/pmix/mca_preg_native.la +%%MPIDIR%%/lib/pmix/mca_preg_native.so +%%MPIDIR%%/lib/pmix/mca_psec_native.la +%%MPIDIR%%/lib/pmix/mca_psec_native.so +%%MPIDIR%%/lib/pmix/mca_psec_none.la +%%MPIDIR%%/lib/pmix/mca_psec_none.so +%%MPIDIR%%/lib/pmix/mca_psensor_file.la +%%MPIDIR%%/lib/pmix/mca_psensor_file.so +%%MPIDIR%%/lib/pmix/mca_psensor_heartbeat.la +%%MPIDIR%%/lib/pmix/mca_psensor_heartbeat.so +%%MPIDIR%%/lib/pmix/mca_pshmem_mmap.la +%%MPIDIR%%/lib/pmix/mca_pshmem_mmap.so +%%MPIDIR%%/lib/pmix/mca_ptl_tcp.la +%%MPIDIR%%/lib/pmix/mca_ptl_tcp.so +%%MPIDIR%%/lib/pmix/mca_ptl_usock.la +%%MPIDIR%%/lib/pmix/mca_ptl_usock.so +%%MPIDIR%%/libdata/pkgconfig/ompi-c.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-cxx.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-f77.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-f90.pc +%%MPIDIR%%/libdata/pkgconfig/ompi-fort.pc +%%MPIDIR%%/libdata/pkgconfig/ompi.pc +%%MPIDIR%%/libdata/pkgconfig/orte.pc %%MPIDIR%%/man/man1/mpiCC.1.gz %%MPIDIR%%/man/man1/mpic++.1.gz %%MPIDIR%%/man/man1/mpicc.1.gz @@ -465,21 +362,38 @@ %%MPIDIR%%/man/man1/mpifort.1.gz %%MPIDIR%%/man/man1/mpirun.1.gz %%MPIDIR%%/man/man1/ompi-clean.1.gz -%%MPIDIR%%/man/man1/ompi-ps.1.gz %%MPIDIR%%/man/man1/ompi-server.1.gz -%%MPIDIR%%/man/man1/ompi-top.1.gz %%MPIDIR%%/man/man1/ompi_info.1.gz %%MPIDIR%%/man/man1/opal_wrapper.1.gz %%MPIDIR%%/man/man1/orte-clean.1.gz -%%MPIDIR%%/man/man1/orte-dvm.1.gz %%MPIDIR%%/man/man1/orte-info.1.gz -%%MPIDIR%%/man/man1/orte-ps.1.gz %%MPIDIR%%/man/man1/orte-server.1.gz -%%MPIDIR%%/man/man1/orte-submit.1.gz -%%MPIDIR%%/man/man1/orte-top.1.gz %%MPIDIR%%/man/man1/orted.1.gz %%MPIDIR%%/man/man1/orterun.1.gz %%MPIDIR%%/man/man3/MPI.3.gz +%%MPIDIR%%/man/man3/MPIX_Allgather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Allgatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Allreduce_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoall_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoallv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Alltoallw_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Barrier_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Bcast_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Exscan_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Gather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Gatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_allgather_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_allgatherv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoall_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoallv_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Neighbor_alltoallw_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Query_cuda_support.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_scatter_block_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Reduce_scatter_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scan_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scatter_init.3.gz +%%MPIDIR%%/man/man3/MPIX_Scatterv_init.3.gz %%MPIDIR%%/man/man3/MPI_Abort.3.gz %%MPIDIR%%/man/man3/MPI_Accumulate.3.gz %%MPIDIR%%/man/man3/MPI_Add_error_class.3.gz @@ -583,10 +497,14 @@ %%MPIDIR%%/man/man3/MPI_File_get_type_extent.3.gz %%MPIDIR%%/man/man3/MPI_File_get_view.3.gz %%MPIDIR%%/man/man3/MPI_File_iread.3.gz +%%MPIDIR%%/man/man3/MPI_File_iread_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iread_at.3.gz +%%MPIDIR%%/man/man3/MPI_File_iread_at_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iread_shared.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite.3.gz +%%MPIDIR%%/man/man3/MPI_File_iwrite_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite_at.3.gz +%%MPIDIR%%/man/man3/MPI_File_iwrite_at_all.3.gz %%MPIDIR%%/man/man3/MPI_File_iwrite_shared.3.gz %%MPIDIR%%/man/man3/MPI_File_open.3.gz %%MPIDIR%%/man/man3/MPI_File_preallocate.3.gz @@ -709,6 +627,8 @@ %%MPIDIR%%/man/man3/MPI_Keyval_create.3.gz %%MPIDIR%%/man/man3/MPI_Keyval_free.3.gz %%MPIDIR%%/man/man3/MPI_Lookup_name.3.gz +%%MPIDIR%%/man/man3/MPI_Message_c2f.3.gz +%%MPIDIR%%/man/man3/MPI_Message_f2c.3.gz %%MPIDIR%%/man/man3/MPI_Mprobe.3.gz %%MPIDIR%%/man/man3/MPI_Mrecv.3.gz %%MPIDIR%%/man/man3/MPI_Neighbor_allgather.3.gz @@ -717,6 +637,7 @@ %%MPIDIR%%/man/man3/MPI_Neighbor_alltoallv.3.gz %%MPIDIR%%/man/man3/MPI_Neighbor_alltoallw.3.gz %%MPIDIR%%/man/man3/MPI_Op_c2f.3.gz +%%MPIDIR%%/man/man3/MPI_Op_commutative.3.gz %%MPIDIR%%/man/man3/MPI_Op_create.3.gz %%MPIDIR%%/man/man3/MPI_Op_f2c.3.gz %%MPIDIR%%/man/man3/MPI_Op_free.3.gz @@ -887,6 +808,7 @@ %%MPIDIR%%/man/man3/MPI_Win_wait.3.gz %%MPIDIR%%/man/man3/MPI_Wtick.3.gz %%MPIDIR%%/man/man3/MPI_Wtime.3.gz +%%MPIDIR%%/man/man3/OMPI_Affinity_str.3.gz %%MPIDIR%%/man/man3/OpenMPI.3.gz %%MPIDIR%%/man/man7/ompi_crcp.7.gz %%MPIDIR%%/man/man7/opal_crs.7.gz @@ -898,38 +820,26 @@ %%MPIDIR%%/%%DATADIR%%/help-btl-vader.txt %%MPIDIR%%/%%DATADIR%%/help-coll-sync.txt %%MPIDIR%%/%%DATADIR%%/help-dash-host.txt -%%MPIDIR%%/%%DATADIR%%/help-db-base.txt %%MPIDIR%%/%%DATADIR%%/help-errmgr-base.txt %%MPIDIR%%/%%DATADIR%%/help-ess-base.txt -%%MPIDIR%%/%%DATADIR%%/help-ess-hnp.txt %%MPIDIR%%/%%DATADIR%%/help-hostfile.txt %%MPIDIR%%/%%DATADIR%%/help-mca-base.txt %%MPIDIR%%/%%DATADIR%%/help-mca-bml-r2.txt %%MPIDIR%%/%%DATADIR%%/help-mca-coll-base.txt -%%MPIDIR%%/%%DATADIR%%/help-mca-op-base.txt +%%MPIDIR%%/%%DATADIR%%/help-mca-hook-base.txt %%MPIDIR%%/%%DATADIR%%/help-mca-var.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-api.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-base.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-sm.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-btl-tcp.txt -%%MPIDIR%%/%%DATADIR%%/help-mpi-coll-ml.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-coll-sm.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-common-sm.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-errors.txt -%%MPIDIR%%/%%DATADIR%%/help-mpi-pml-bfo.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-pml-ob1.txt %%MPIDIR%%/%%DATADIR%%/help-mpi-runtime.txt %%MPIDIR%%/%%DATADIR%%/help-mpool-base.txt -%%MPIDIR%%/%%DATADIR%%/help-ompi-crcp-base.txt -%%MPIDIR%%/%%DATADIR%%/help-ompi-dpm-base.txt -%%MPIDIR%%/%%DATADIR%%/help-ompi-dpm-orte.txt -%%MPIDIR%%/%%DATADIR%%/help-ompi-pubsub-orte.txt %%MPIDIR%%/%%DATADIR%%/help-oob-base.txt %%MPIDIR%%/%%DATADIR%%/help-oob-tcp.txt -%%MPIDIR%%/%%DATADIR%%/help-opal-compress-base.txt -%%MPIDIR%%/%%DATADIR%%/help-opal-compress-bzip.txt -%%MPIDIR%%/%%DATADIR%%/help-opal-compress-gzip.txt -%%MPIDIR%%/%%DATADIR%%/help-opal-crs-base.txt %%MPIDIR%%/%%DATADIR%%/help-opal-crs-none.txt %%MPIDIR%%/%%DATADIR%%/help-opal-hwloc-base.txt %%MPIDIR%%/%%DATADIR%%/help-opal-runtime.txt @@ -940,34 +850,35 @@ %%MPIDIR%%/%%DATADIR%%/help-opal-wrapper.txt %%MPIDIR%%/%%DATADIR%%/help-opal_info.txt %%MPIDIR%%/%%DATADIR%%/help-orte-clean.txt -%%MPIDIR%%/%%DATADIR%%/help-orte-filem-base.txt %%MPIDIR%%/%%DATADIR%%/help-orte-filem-raw.txt %%MPIDIR%%/%%DATADIR%%/help-orte-info.txt %%MPIDIR%%/%%DATADIR%%/help-orte-odls-base.txt %%MPIDIR%%/%%DATADIR%%/help-orte-odls-default.txt -%%MPIDIR%%/%%DATADIR%%/help-orte-ps.txt +%%MPIDIR%%/%%DATADIR%%/help-orte-odls-pspawn.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-base.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-md.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-ppr.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-resilient.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-rr.txt %%MPIDIR%%/%%DATADIR%%/help-orte-rmaps-seq.txt +%%MPIDIR%%/%%DATADIR%%/help-orte-rtc-base.txt +%%MPIDIR%%/%%DATADIR%%/help-orte-rtc-hwloc.txt %%MPIDIR%%/%%DATADIR%%/help-orte-runtime.txt %%MPIDIR%%/%%DATADIR%%/help-orte-server.txt %%MPIDIR%%/%%DATADIR%%/help-orte-snapc-base.txt -%%MPIDIR%%/%%DATADIR%%/help-orte-sstore-base.txt -%%MPIDIR%%/%%DATADIR%%/help-orte-top.txt %%MPIDIR%%/%%DATADIR%%/help-orted.txt %%MPIDIR%%/%%DATADIR%%/help-orterun.txt +%%MPIDIR%%/%%DATADIR%%/help-osc-pt2pt.txt %%MPIDIR%%/%%DATADIR%%/help-plm-base.txt %%MPIDIR%%/%%DATADIR%%/help-plm-rsh.txt +%%MPIDIR%%/%%DATADIR%%/help-pmix-base.txt +%%MPIDIR%%/%%DATADIR%%/help-pmix-pmix3x.txt %%MPIDIR%%/%%DATADIR%%/help-ras-base.txt %%MPIDIR%%/%%DATADIR%%/help-ras-simulator.txt +%%MPIDIR%%/%%DATADIR%%/help-rcache-base.txt %%MPIDIR%%/%%DATADIR%%/help-regex.txt %%MPIDIR%%/%%DATADIR%%/help-rmaps_rank_file.txt -%%MPIDIR%%/%%DATADIR%%/help-sec-base.txt -%%MPIDIR%%/%%DATADIR%%/help-state-staged-hnp.txt -%%MPIDIR%%/%%DATADIR%%/mca-coll-ml.config +%%MPIDIR%%/%%DATADIR%%/help-state-base.txt %%MPIDIR%%/%%DATADIR%%/mpiCC-wrapper-data.txt %%MPIDIR%%/%%DATADIR%%/mpic++-wrapper-data.txt %%MPIDIR%%/%%DATADIR%%/mpicc-wrapper-data.txt @@ -977,3 +888,11 @@ %%MPIDIR%%/%%DATADIR%%/mpifort-wrapper-data.txt %%MPIDIR%%/%%DATADIR%%/openmpi-valgrind.supp %%MPIDIR%%/%%DATADIR%%/ortecc-wrapper-data.txt +%%MPIDIR%%/share/pmix/help-pmix-mca-base.txt +%%MPIDIR%%/share/pmix/help-pmix-mca-var.txt +%%MPIDIR%%/share/pmix/help-pmix-plog.txt +%%MPIDIR%%/share/pmix/help-pmix-psensor-file.txt +%%MPIDIR%%/share/pmix/help-pmix-psensor-heartbeat.txt +%%MPIDIR%%/share/pmix/help-pmix-runtime.txt +%%MPIDIR%%/share/pmix/help-pmix-server.txt +%%MPIDIR%%/share/pmix/pmix-valgrind.supp diff --git a/science/chrono/Makefile b/science/chrono/Makefile index 6a41074dd738..9e905f134ebe 100644 --- a/science/chrono/Makefile +++ b/science/chrono/Makefile @@ -2,7 +2,7 @@ PORTNAME= chrono DISTVERSION= 5.0.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science devel PKGNAMESUFFIX= -physics-simulation-engine diff --git a/science/fvcom-mpi/Makefile b/science/fvcom-mpi/Makefile index 2ba8d2be6317..949e404bb4f4 100644 --- a/science/fvcom-mpi/Makefile +++ b/science/fvcom-mpi/Makefile @@ -1,6 +1,6 @@ # $FreeBSD$ -PORTREVISION= 14 +PORTREVISION= 15 PKGNAMESUFFIX= -openmpi MPIPREFIX= mpi/openmpi/ diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile index 8165348e869c..cc86fdbeef8e 100644 --- a/science/gromacs/Makefile +++ b/science/gromacs/Makefile @@ -3,7 +3,7 @@ PORTNAME= gromacs DISTVERSION= 2020.1 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist index 2e9e11978cb4..eae5cd24ba32 100644 --- a/science/gromacs/pkg-plist +++ b/science/gromacs/pkg-plist @@ -28,20 +28,20 @@ include/gromacs/utility/basedefinitions.h include/gromacs/utility/current_function.h include/gromacs/utility/gmxassert.h include/gromacs/utility/real.h -lib/libgmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%.so.0 -lib/libgmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%.so.0.1.0 +lib/libgmxapi.so +lib/libgmxapi.so.0 +lib/libgmxapi.so.0.1.0 lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so.5 lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so.5.0.0 libdata/pkgconfig/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.pc -share/cmake/gmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%/gmxapi-config-version.cmake -share/cmake/gmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%/gmxapi-config.cmake -share/cmake/gmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%/gmxapi-%%CMAKE_BUILD_TYPE%%.cmake -share/cmake/gmxapi%%SUFFIX_MPI%%%%SUFFIX_D%%/gmxapi.cmake +share/cmake/gmxapi/gmxapi-config-version.cmake +share/cmake/gmxapi/gmxapi-config.cmake +share/cmake/gmxapi/gmxapi-%%CMAKE_BUILD_TYPE%%.cmake +share/cmake/gmxapi/gmxapi.cmake share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%-config-version.cmake share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%-config.cmake -share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%-toolchain.cmake +share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/gromacs-toolchain%%SUFFIX_MPI%%%%SUFFIX_D%%.cmake share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/libgromacs-%%CMAKE_BUILD_TYPE%%.cmake share/cmake/gromacs%%SUFFIX_MPI%%%%SUFFIX_D%%/libgromacs.cmake %%DATADIR%%/COPYING diff --git a/science/hypre/Makefile b/science/hypre/Makefile index ebf6f021d7c3..cd1a7c65d015 100644 --- a/science/hypre/Makefile +++ b/science/hypre/Makefile @@ -4,7 +4,7 @@ PORTNAME= hypre DISTVERSIONPREFIX= v DISTVERSION= 2.18.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/lammps/Makefile b/science/lammps/Makefile index 3d1ca52adace..0c64d511cd03 100644 --- a/science/lammps/Makefile +++ b/science/lammps/Makefile @@ -2,7 +2,7 @@ PORTNAME= lammps PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/} -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/latte/Makefile b/science/latte/Makefile index 2d7d60fb758c..f2eb0f9305a8 100644 --- a/science/latte/Makefile +++ b/science/latte/Makefile @@ -3,7 +3,7 @@ PORTNAME= latte DISTVERSIONPREFIX= v DISTVERSION= 1.2.1 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/liggghts/Makefile b/science/liggghts/Makefile index 59a3ea304c7f..0686265f7137 100644 --- a/science/liggghts/Makefile +++ b/science/liggghts/Makefile @@ -2,7 +2,7 @@ PORTNAME= liggghts DISTVERSION= 3.8.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -27,7 +27,8 @@ USE_XORG= ice sm x11 xext xt USE_QT= core gui sql widgets qmake_build buildtools_build USE_LDCONFIG= yes -CMAKE_ARGS= -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicc" -DMPI_CXX_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicxx" \ +CMAKE_ARGS= -DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicc" \ + -DMPI_CXX_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicxx" \ -DVTK_DIR:FILEPATH="${LOCALBASE}/lib/cmake/vtk-8.1" WRKSRC_SUBDIR= src diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile index 302bf9f6dc23..8f486de2a70e 100644 --- a/science/pnetcdf/Makefile +++ b/science/pnetcdf/Makefile @@ -3,7 +3,7 @@ PORTNAME= pnetcdf PORTVERSION= 1.8.1 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= science parallel MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \ LOCAL/sunpoet @@ -14,10 +14,9 @@ COMMENT= Library providing high-performance I/O OPTIONS_DEFINE= DOCS OPTIONS_SINGLE= MPI -OPTIONS_SINGLE_MPI= OPENMPI OPENMPI2 OPENMPI3 MPICH -OPTIONS_DEFAULT=OPENMPI3 -OPENMPI_DESC= Parallel processing support via Open MPI 1.x -OPENMPI2_DESC= Parallel processing support via Open MPI 2.x +OPTIONS_SINGLE_MPI= OPENMPI OPENMPI3 MPICH +OPTIONS_DEFAULT=OPENMPI +OPENMPI_DESC= Parallel processing support via Open MPI (current) OPENMPI3_DESC= Parallel processing support via Open MPI 3.x CONFLICTS_INSTALL= hdf-4.* @@ -35,8 +34,6 @@ MPICH_CONFIGURE_ON= --with-mpi=${LOCALBASE} MPICH_LIB_DEPENDS= libmpich.so:net/mpich OPENMPI_CONFIGURE_ON= --with-mpi=${LOCALBASE}/mpi/openmpi OPENMPI_LIB_DEPENDS= libmpi.so:net/openmpi -OPENMPI2_CONFIGURE_ON= --with-mpi=${LOCALBASE}/mpi/openmpi2 -OPENMPI2_LIB_DEPENDS= libmpi.so:net/openmpi2 OPENMPI3_CONFIGURE_ON= --with-mpi=${LOCALBASE}/mpi/openmpi3 OPENMPI3_LIB_DEPENDS= libmpi.so:net/openmpi3 diff --git a/science/sparta/Makefile b/science/sparta/Makefile index 18b09e4b1f2a..a8c16e089963 100644 --- a/science/sparta/Makefile +++ b/science/sparta/Makefile @@ -2,6 +2,7 @@ PORTNAME= sparta PORTVERSION= ${GH_TAGNAME:C/([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\3.\2.\1/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/} +PORTREVISION= 1 CATEGORIES= science PKGNAMESUFFIX= -dsmc # Direct Simulation Monte Carlo @@ -34,7 +35,9 @@ SERIAL_PLIST_FILES= bin/spa_serial MPI_ALL_TARGET= mpi MPI_PLIST_FILES= bin/spa_mpi MPI_CXXFLAGS= -I${LOCALBASE}/mpi/openmpi/include -MPI_LDFLAGS= ${LOCALBASE}/mpi/openmpi/lib/libmpi.so ${LOCALBASE}/mpi/openmpi/lib/libmpi_cxx.so -Wl,-rpath=${LOCALBASE}/mpi/openmpi/lib +MPI_LDFLAGS= ${LOCALBASE}/mpi/openmpi/lib/libmpi.so \ + ${LOCALBASE}/mpi/openmpi/lib/libmpi_cxx.so \ + -Wl,-rpath=${LOCALBASE}/mpi/openmpi/lib MPI_LIB_DEPENDS= libmpi.so:net/openmpi PORTSCOUT= ignore:1 # due to a special version tagging scheme that this project uses portscout fails to find new versions, watching their release page instead |