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authorThierry Thomas <thierry@FreeBSD.org>2024-01-01 12:49:51 +0100
committerThierry Thomas <thierry@FreeBSD.org>2024-01-01 12:49:51 +0100
commitf2489ab0c721f5ec60a9f8074e904cfbe5d21dfd (patch)
tree56ecfb00dbda72ecd7ac90190f27ee65820a2e8b /science
parentmath/*: upgrade blas, lapack, cblas, xlapack and lapacke to 3.12.0 (diff)
*/*: chase the upgrade of BLAS / LAPACK to 3.12.0
PR: 275860
Diffstat (limited to 'science')
-rw-r--r--science/PETSc/Makefile1
-rw-r--r--science/abinit/Makefile2
-rw-r--r--science/atompaw/Makefile1
-rw-r--r--science/cardioid/Makefile2
-rw-r--r--science/chrono/Makefile2
-rw-r--r--science/code_saturne/Makefile2
-rw-r--r--science/cp2k/Makefile2
-rw-r--r--science/dakota/Makefile2
-rw-r--r--science/dalton/Makefile2
-rw-r--r--science/dftbplus/Makefile2
-rw-r--r--science/dirac/Makefile2
-rw-r--r--science/elk/Makefile1
-rw-r--r--science/elmerfem/Makefile2
-rw-r--r--science/ergo/Makefile1
-rw-r--r--science/fleur/Makefile2
-rw-r--r--science/getdp/Makefile2
-rw-r--r--science/ghemical/Makefile2
-rw-r--r--science/gromacs/Makefile2
-rw-r--r--science/harminv/Makefile2
-rw-r--r--science/hypre/Makefile2
-rw-r--r--science/jdftx/Makefile2
-rw-r--r--science/libghemical/Makefile2
-rw-r--r--science/madness/Makefile2
-rw-r--r--science/mbdyn/Makefile2
-rw-r--r--science/meep/Makefile2
-rw-r--r--science/mpqc/Makefile2
-rw-r--r--science/multiwfn/Makefile2
-rw-r--r--science/nwchem/Makefile2
-rw-r--r--science/octopus/Makefile1
-rw-r--r--science/openmodelica/Makefile1
-rw-r--r--science/openmx/Makefile2
-rw-r--r--science/plumed/Makefile2
-rw-r--r--science/py-gpaw/Makefile2
-rw-r--r--science/py-scipy/Makefile2
-rw-r--r--science/qbox/Makefile1
-rw-r--r--science/quantum-espresso/Makefile2
-rw-r--r--science/siesta/Makefile2
-rw-r--r--science/v_sim/Makefile2
-rw-r--r--science/wannier90/Makefile2
39 files changed, 39 insertions, 32 deletions
diff --git a/science/PETSc/Makefile b/science/PETSc/Makefile
index 48fca6a13c7f..339fb923761a 100644
--- a/science/PETSc/Makefile
+++ b/science/PETSc/Makefile
@@ -1,5 +1,6 @@
PORTNAME= PETSc
DISTVERSION= 3.20.2
+PORTREVISION= 1
CATEGORIES= science devel
MASTER_SITES= http://web.cels.anl.gov/projects/petsc/download/release-snapshots/ # was: https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/
DISTNAME= ${PORTNAME:tl}-${DISTVERSION}
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index 989c360b62b6..468fcbbefec1 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -1,6 +1,6 @@
PORTNAME= abinit
DISTVERSION= 9.10.3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/atompaw/Makefile b/science/atompaw/Makefile
index 713ae4c781b8..ae672d58e353 100644
--- a/science/atompaw/Makefile
+++ b/science/atompaw/Makefile
@@ -1,5 +1,6 @@
PORTNAME= atompaw
DISTVERSION= 4.2.0.3
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://users.wfu.edu/natalie/papers/pwpaw/
diff --git a/science/cardioid/Makefile b/science/cardioid/Makefile
index 37f1b3eda957..d56181105cc0 100644
--- a/science/cardioid/Makefile
+++ b/science/cardioid/Makefile
@@ -1,6 +1,6 @@
PORTNAME= cardioid
PORTVERSION= g20211026
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/chrono/Makefile b/science/chrono/Makefile
index 2ba7831f06ce..b68eb7156669 100644
--- a/science/chrono/Makefile
+++ b/science/chrono/Makefile
@@ -1,6 +1,6 @@
PORTNAME= chrono
DISTVERSION= 8.0.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science devel
PKGNAMESUFFIX= -physics-simulation-engine
diff --git a/science/code_saturne/Makefile b/science/code_saturne/Makefile
index 42b5e635aa30..1a0f0f4b749a 100644
--- a/science/code_saturne/Makefile
+++ b/science/code_saturne/Makefile
@@ -1,6 +1,6 @@
PORTNAME= code_saturne
PORTVERSION= 8.1.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science parallel
MASTER_SITES= https://www.code-saturne.org/releases/
diff --git a/science/cp2k/Makefile b/science/cp2k/Makefile
index 3a486dffb124..df730695e735 100644
--- a/science/cp2k/Makefile
+++ b/science/cp2k/Makefile
@@ -1,7 +1,7 @@
PORTNAME= cp2k
DISTVERSIONPREFIX= v
DISTVERSION= 2022.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/dakota/Makefile b/science/dakota/Makefile
index b079eb184d89..0b6253517611 100644
--- a/science/dakota/Makefile
+++ b/science/dakota/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dakota
DISTVERSION= 6.17.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
DISTNAME= ${PORTNAME}-${DISTVERSION}-release-public-src-cli
diff --git a/science/dalton/Makefile b/science/dalton/Makefile
index f82a5bb9ac41..240fbae76d33 100644
--- a/science/dalton/Makefile
+++ b/science/dalton/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dalton
DISTVERSION= 2020.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/dftbplus/Makefile b/science/dftbplus/Makefile
index c4e9cabba2a8..a4ead3151034 100644
--- a/science/dftbplus/Makefile
+++ b/science/dftbplus/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dftbplus
DISTVERSION= 23.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/dirac/Makefile b/science/dirac/Makefile
index 7680ba40e29e..3bc508113a4d 100644
--- a/science/dirac/Makefile
+++ b/science/dirac/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dirac
DISTVERSION= 22.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science # chemistry
MASTER_SITES= https://zenodo.org/record/6010450/files/
PKGNAMESUFFIX= -quantum-chemistry-software
diff --git a/science/elk/Makefile b/science/elk/Makefile
index cff25347bf54..75f5c1cf7c85 100644
--- a/science/elk/Makefile
+++ b/science/elk/Makefile
@@ -1,5 +1,6 @@
PORTNAME= elk
DISTVERSION= 9.2.12
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}/
PKGNAMESUFFIX= -chemistry
diff --git a/science/elmerfem/Makefile b/science/elmerfem/Makefile
index a34248be4820..cc9dcd5dc784 100644
--- a/science/elmerfem/Makefile
+++ b/science/elmerfem/Makefile
@@ -1,7 +1,7 @@
PORTNAME= elmerfem
DISTVERSIONPREFIX= release-
DISTVERSION= 9.0
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science
MAINTAINER= henrik@gulbra.net
diff --git a/science/ergo/Makefile b/science/ergo/Makefile
index c8b327b8013a..97b7b3e768cf 100644
--- a/science/ergo/Makefile
+++ b/science/ergo/Makefile
@@ -1,5 +1,6 @@
PORTNAME= ergo
DISTVERSION= 3.8.2
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://www.ergoscf.org/source/tarfiles/
diff --git a/science/fleur/Makefile b/science/fleur/Makefile
index a5cbfcdf4981..25eec7a2572d 100644
--- a/science/fleur/Makefile
+++ b/science/fleur/Makefile
@@ -1,6 +1,6 @@
PORTNAME= fleur
DISTVERSION= 6.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science # chemistry
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index a5f881b8e5d7..17ce626ea0e4 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -1,6 +1,6 @@
PORTNAME= getdp
PORTVERSION= 3.5.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 5cf41335ef41..81cc051e2c1c 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -1,6 +1,6 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
-PORTREVISION= 26
+PORTREVISION= 27
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
MASTER_SITE_SUBDIR= release20111012 current
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index ceb970ba708c..f9d1edadcd91 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -1,6 +1,6 @@
PORTNAME= gromacs
DISTVERSION= 2023.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= https://ftp.gromacs.org/pub/gromacs/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} # only for googletest
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 5c0483d3e885..0ce8c6a4dddb 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -1,6 +1,6 @@
PORTNAME= harminv
PORTVERSION= 1.3.1
-PORTREVISION= 21
+PORTREVISION= 22
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/harminv/
diff --git a/science/hypre/Makefile b/science/hypre/Makefile
index 8586c9b0711e..7072b3d59c9a 100644
--- a/science/hypre/Makefile
+++ b/science/hypre/Makefile
@@ -1,7 +1,7 @@
PORTNAME= hypre
DISTVERSIONPREFIX= v
DISTVERSION= 2.30.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/jdftx/Makefile b/science/jdftx/Makefile
index 94b5011be5ff..22c37e938d72 100644
--- a/science/jdftx/Makefile
+++ b/science/jdftx/Makefile
@@ -1,7 +1,7 @@
PORTNAME= jdftx
DISTVERSIONPREFIX= v
DISTVERSION= 1.7.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index 7b509d67a132..32747be1cc6c 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -1,6 +1,6 @@
PORTNAME= libghemical
PORTVERSION= 3.0.0
-PORTREVISION= 19
+PORTREVISION= 20
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current/
diff --git a/science/madness/Makefile b/science/madness/Makefile
index 27a7ffb39b74..a72638c91b4c 100644
--- a/science/madness/Makefile
+++ b/science/madness/Makefile
@@ -1,6 +1,6 @@
PORTNAME= madness
DISTVERSION= 0.10.1.20180823
-PORTREVISION= 15
+PORTREVISION= 16
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index 5c61052133b0..d73f69b51cc8 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mbdyn
DISTVERSION= 1.7.3
-PORTREVISION= 11
+PORTREVISION= 12
CATEGORIES= science
MASTER_SITES= https://www.mbdyn.org/userfiles/downloads/
diff --git a/science/meep/Makefile b/science/meep/Makefile
index c0d29cadd189..4347eb2ca309 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -1,7 +1,7 @@
PORTNAME= meep
DISTVERSIONPREFIX= v
DISTVERSION= 1.27.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science cad
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index dd2421bff14f..0fd8fd908836 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mpqc
PORTVERSION= 2.3.1
-PORTREVISION= 49
+PORTREVISION= 50
CATEGORIES= science parallel
MASTER_SITES= SF
diff --git a/science/multiwfn/Makefile b/science/multiwfn/Makefile
index 892c43ed79c0..35630a783446 100644
--- a/science/multiwfn/Makefile
+++ b/science/multiwfn/Makefile
@@ -1,7 +1,7 @@
PORTNAME= multiwfn
DISTVERSIONPREFIX= v
DISTVERSION= 3.8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://sobereva.com/multiwfn/misc/:main \
https://www.dislin.de/downloads/unix/:dislin
diff --git a/science/nwchem/Makefile b/science/nwchem/Makefile
index 0b4df23ade53..b1b6bbeea975 100644
--- a/science/nwchem/Makefile
+++ b/science/nwchem/Makefile
@@ -1,7 +1,7 @@
PORTNAME= nwchem
DISTVERSIONPREFIX= v
DISTVERSION= 7.2.0
-PORTREVISION= 2
+PORTREVISION= 3
DISTVERSIONSUFFIX= -release
CATEGORIES= science
MASTER_SITES= https://www.chemie.uni-bonn.de/pctc/mulliken-center/software/dft-d3/:dftd3 \
diff --git a/science/octopus/Makefile b/science/octopus/Makefile
index d6436feaf542..8d80040d60a0 100644
--- a/science/octopus/Makefile
+++ b/science/octopus/Makefile
@@ -1,5 +1,6 @@
PORTNAME= octopus
DISTVERSION= 13.0
+PORTREVISION= 1
CATEGORIES= science # chemistry
MASTER_SITES= https://octopus-code.org/download/${DISTVERSION}/
diff --git a/science/openmodelica/Makefile b/science/openmodelica/Makefile
index 5620a39863ef..7c3cc5ee5b07 100644
--- a/science/openmodelica/Makefile
+++ b/science/openmodelica/Makefile
@@ -1,6 +1,7 @@
PORTNAME= openmodelica
DISTVERSIONPREFIX= v
DISTVERSION= 1.22.0
+PORTREVISION= 1
CATEGORIES= science cad java
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
diff --git a/science/openmx/Makefile b/science/openmx/Makefile
index 83b29aa5ec2d..297bbc26ba97 100644
--- a/science/openmx/Makefile
+++ b/science/openmx/Makefile
@@ -1,6 +1,6 @@
PORTNAME= openmx
DISTVERSION= 3.8.5 # the 18June12 patch upgrades 3.8 -> 3.8.5
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= science
MASTER_SITES= http://www.openmx-square.org/ \
http://www.openmx-square.org/bugfixed/18June12/:patch
diff --git a/science/plumed/Makefile b/science/plumed/Makefile
index 5543d2937068..cf0ec9948065 100644
--- a/science/plumed/Makefile
+++ b/science/plumed/Makefile
@@ -1,6 +1,6 @@
PORTNAME= plumed
DISTVERSION= 2.8.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science graphics
MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}2/releases/download/v${DISTVERSION}/
diff --git a/science/py-gpaw/Makefile b/science/py-gpaw/Makefile
index 91c3b351c287..7900ff81fef1 100644
--- a/science/py-gpaw/Makefile
+++ b/science/py-gpaw/Makefile
@@ -1,6 +1,6 @@
PORTNAME= gpaw
DISTVERSION= 22.1.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science python
MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index c4946ac4b6b6..d2178edee619 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -1,6 +1,6 @@
PORTNAME= scipy
DISTVERSION= 1.11.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= https://docs.scipy.org/doc/${PORTNAME}-${DISTVERSION}/:doc \
PYPI:source \
diff --git a/science/qbox/Makefile b/science/qbox/Makefile
index aa905b444c79..454f73476f1b 100644
--- a/science/qbox/Makefile
+++ b/science/qbox/Makefile
@@ -1,6 +1,7 @@
PORTNAME= qbox
DISTVERSIONPREFIX= rel
DISTVERSION= 1_76_1
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/quantum-espresso/Makefile b/science/quantum-espresso/Makefile
index e5b400798af4..6ae410269510 100644
--- a/science/quantum-espresso/Makefile
+++ b/science/quantum-espresso/Makefile
@@ -1,7 +1,7 @@
PORTNAME= quantum-espresso
DISTVERSIONPREFIX= qe-
DISTVERSION= 6.7.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org
diff --git a/science/siesta/Makefile b/science/siesta/Makefile
index ed497852d81a..35ff568303f3 100644
--- a/science/siesta/Makefile
+++ b/science/siesta/Makefile
@@ -1,6 +1,6 @@
PORTNAME= siesta
DISTVERSION= 4.1.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science # chemistry
MASTER_SITES= https://gitlab.com/siesta-project/${PORTNAME}/-/releases/v${DISTVERSION}/downloads/
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index 7f441d01a142..643bff6ad57c 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -1,6 +1,6 @@
PORTNAME= v_sim
DISTVERSION= 3.8.0
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= science
MAINTAINER= thierry@FreeBSD.org
diff --git a/science/wannier90/Makefile b/science/wannier90/Makefile
index 623d202d733d..63b95050a2eb 100644
--- a/science/wannier90/Makefile
+++ b/science/wannier90/Makefile
@@ -1,7 +1,7 @@
PORTNAME= wannier90
DISTVERSIONPREFIX= v
DISTVERSION= 3.1.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org