Qt4 deprecation: Remove Qt4 and its consumes.

2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
2019-03-15 audio/qmpdclient: Qt4 has been EOL since december 2015
2019-03-15 audio/skype-call-recorder: Qt4 has been EOL since december 2015
2019-03-15 audio/virtual_oss_ctl: Qt4 has been EOL since december 2015
2019-03-15 biology/clustalx: Qt4 has been EOL since december 2015
2019-03-15 cad/klayout: Qt4 has been EOL since december 2015
2019-03-15 cad/layouteditor: Qt4 has been EOL since december 2015
2019-03-15 cad/leocad: Qt4 has been EOL since december 2015
2019-03-15 cad/meshlab: Qt4 has been EOL since december 2015
2019-03-15 cad/qfsm: Qt4 has been EOL since december 2015
2019-03-15 cad/qucs: Qt4 has been EOL since december 2015
2019-03-15 chinese/gcin-qt4: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-cn: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-tw: Qt4 has been EOL since december 2015
2019-03-15 chinese/qterm: Qt4 has been EOL since december 2015
2019-03-15 comms/dabstick-radio: Qt4 has been EOL since december 2015
2019-03-15 comms/hamfax: Qt4 has been EOL since december 2015
2019-03-15 comms/linpsk: Qt4 has been EOL since december 2015
2019-03-15 databases/py-qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-ibase-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-mysql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-odbc-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-pgsql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite3-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/sqliteman: Qt4 has been EOL since december 2015
2019-03-15 databases/tora: Qt4 has been EOL since december 2015
2019-03-15 deskutils/cdcat: Qt4 has been EOL since december 2015
2019-03-15 deskutils/fbreader: Qt4 has been EOL since december 2015
2019-03-15 deskutils/launchy: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qorganizer: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qrfcview: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qtm: Qt4 has been EOL since december 2015
2019-03-15 deskutils/tuxcards: Qt4 has been EOL since december 2015
2019-03-15 deskutils/vym: Qt4 has been EOL since december 2015
2019-03-15 devel/apiextractor: Qt4 has been EOL since december 2015
2019-03-15 devel/automoc4: Qt4 has been EOL since december 2015
2019-03-15 devel/edb: Qt4 has been EOL since december 2015
2019-03-15 devel/generatorrunner: Qt4 has been EOL since december 2015
2019-03-15 devel/grantlee: Qt4 has been EOL since december 2015
2019-03-15 devel/gwenhywfar-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/kaptain: Qt4 has been EOL since december 2015
2019-03-15 devel/ninja-ide: Qt4 has been EOL since december 2015
2019-03-12 devel/physfs-devel: is the same as devel/physfs, serving no purpose
2019-03-15 devel/piklab: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-core: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbussupport: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-help: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-test: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qbzr: Qt4 has been EOL since december 2015
2019-03-15 devel/qct: Qt4 has been EOL since december 2015
2019-03-15 devel/qdevelop: Qt4 has been EOL since december 2015
2019-03-15 devel/qprog: Qt4 has been EOL since december 2015
2019-03-15 devel/qross: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant-adp: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-corelib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-help-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-libqtassistantclient: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguist: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguisttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-makeqpf: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-moc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-porting: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdbusviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdoc3: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmake: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmlviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qt3support: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-singleapplication: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-soap: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qvfb: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-rcc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-testlib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic3: Qt4 has been EOL since december 2015
2019-03-15 devel/qtscriptgenerator: Qt4 has been EOL since december 2015
2019-03-15 devel/shiboken: Qt4 has been EOL since december 2015
2019-03-15 devel/subcommander2: Qt4 has been EOL since december 2015
2019-03-15 devel/universalindentgui: Qt4 has been EOL since december 2015
2019-03-15 editors/leo: Qt4 has been EOL since december 2015
2019-03-15 editors/lfhex: Qt4 has been EOL since december 2015
2019-03-15 editors/plume-creator-devel: Qt4 has been EOL since december 2015
2019-03-15 editors/textroom: Qt4 has been EOL since december 2015
2019-03-15 editors/yzis: Qt4 has been EOL since december 2015
2019-03-15 emulators/dboxfe: Qt4 has been EOL since december 2015
2019-03-15 emulators/q4wine: Qt4 has been EOL since december 2015
2019-03-15 emulators/qtemu: Qt4 has been EOL since december 2015
2019-03-15 emulators/swine: Qt4 has been EOL since december 2015
2019-03-15 finance/alkimia-qt4: Qt4 has been EOL since december 2015
2019-03-15 finance/bitcoin-armory: Qt4 has been EOL since december 2015
2019-03-15 finance/qhacc: Qt4 has been EOL since december 2015
2019-03-15 ftp/scythia: Qt4 has been EOL since december 2015
2019-03-15 games/bubble-chains: Qt4 has been EOL since december 2015
2019-03-15 games/capicity: Qt4 has been EOL since december 2015
2019-03-15 games/capitalism: Qt4 has been EOL since december 2015
2019-03-15 games/flukz: Qt4 has been EOL since december 2015
2019-03-15 games/goldencheetah: Qt4 has been EOL since december 2015
2019-03-15 games/jag: Qt4 has been EOL since december 2015
2019-03-15 games/kardsgt: Qt4 has been EOL since december 2015
2019-03-15 games/kcheckers: Qt4 has been EOL since december 2015
2019-03-15 games/openpref: Qt4 has been EOL since december 2015
2019-03-15 games/pokerth: Qt4 has been EOL since december 2015
2019-03-15 games/qgo: Qt4 has been EOL since december 2015
2019-03-15 games/qtads: Qt4 has been EOL since december 2015
2019-03-15 games/quackle: Qt4 has been EOL since december 2015
2019-03-15 games/spellathon: Qt4 has been EOL since december 2015
2019-03-15 games/sudoku-sensei: Qt4 has been EOL since december 2015
2019-03-15 games/tbe: Qt4 has been EOL since december 2015
2019-03-15 games/xptools: Qt4 has been EOL since december 2015
2019-03-15 german/tipp10: Qt4 has been EOL since december 2015
2019-03-15 graphics/appleseed: Qt4 has been EOL since december 2015
2019-03-15 graphics/aqsis: Qt4 has been EOL since december 2015
2019-03-15 graphics/autoq3d: Qt4 has been EOL since december 2015
2019-03-15 graphics/burplex: Qt4 has been EOL since december 2015
2019-03-15 graphics/darknock: Qt4 has been EOL since december 2015
2019-03-15 graphics/djview4-qt4: Qt4 has been EOL since december 2015
2019-03-15 graphics/easypaint: Qt4 has been EOL since december 2015
2019-03-15 graphics/eos-movrec: Qt4 has been EOL since december 2015
2019-03-15 graphics/gle-graphics: Qt4 has been EOL since december 2015
2019-03-15 graphics/lprof-devel: Qt4 has been EOL since december 2015
2019-03-15 graphics/luminance: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender14: Qt4 has been EOL since december 2015
2019-03-15 graphics/meshviewer: Qt4 has been EOL since december 2015
2019-03-15 graphics/natron: Qt4 has been EOL since december 2015
2019-03-15 graphics/oyranos: Qt4 has been EOL since december 2015
2019-03-15 graphics/pencil: Qt4 has been EOL since december 2015
2019-03-15 graphics/prison: Qt4 has been EOL since december 2015
2019-03-15 graphics/py-qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-iconengines: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-imageformats: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-pixeltool: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qxv: Qt4 has been EOL since december 2015, qxv is unmaintained
2019-03-15 graphics/scantailor: Qt4 has been EOL since december 2015
2019-03-15 graphics/seexpr: Qt4 has been EOL since december 2015
2019-03-15 graphics/smillaenlarger: Qt4 has been EOL since december 2015
2019-03-15 graphics/structuresynth: Qt4 has been EOL since december 2015
2019-03-15 graphics/yagf: Qt4 has been EOL since december 2015
2019-03-15 japanese/qt4-codecs-jp: Qt4 has been EOL since december 2015
2019-03-15 korean/qt4-codecs-kr: Qt4 has been EOL since december 2015
2019-03-15 mail/qgmailnotifier: Qt4 has been EOL since december 2015
2019-03-15 math/qtiplot: Qt4 has been EOL since december 2015
2019-03-15 math/qtoctave: Qt4 has been EOL since december 2015
2019-03-15 math/qwtplot3d-qt4: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-demo: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qmetro: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-l10n: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtconfig: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtdemo: Qt4 has been EOL since december 2015
2019-03-15 misc/saaghar: Qt4 has been EOL since december 2015
2019-03-15 multimedia/2mandvd: Qt4 has been EOL since december 2015
2019-03-15 multimedia/abby: Qt4 has been EOL since december 2015
2019-03-15 multimedia/avidemux-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/gstreamer-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mediadownloader: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mlt-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/phonon-xine: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-phonon: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp-plugin-pack: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-mobility: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/umplayer: Qt4 has been EOL since december 2015
2019-03-15 net/avahi-qt4: Qt4 has been EOL since december 2015
2019-03-15 net/cagibi: Qt4 has been EOL since december 2015
2019-03-15 net/hupnp: Qt4 has been EOL since december 2015
2019-03-15 net/ostinato: Qt4 has been EOL since december 2015
2019-03-15 net/py-qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qjsonrpc: Qt4 has been EOL since december 2015
2019-03-15 net/qoauth: Qt4 has been EOL since december 2015
2019-03-15 net/qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qtweetlib: Qt4 has been EOL since december 2015
2019-03-15 net-im/libjreen: Qt4 has been EOL since december 2015
2019-03-15 net-im/psimedia: Qt4 has been EOL since december 2015
2019-03-15 net-im/ramblercontacts: Qt4 has been EOL since december 2015
2019-03-15 net-im/telepathy-logger-qt4: Qt4 has been EOL since december 2015
2019-03-15 net-im/turpial: Qt4 has been EOL since december 2015
2019-03-15 net-im/vacuum-im: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/nagiosagent: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/qkismet: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/bitmessage: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/eiskaltdcpp-qt: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/valknut: Qt4 has been EOL since december 2015
2019-03-15 polish/qfaktury: Qt4 has been EOL since december 2015
2019-03-15 print/kpdftool: Qt4 has been EOL since december 2015
2019-03-15 print/scribus: Qt4 has been EOL since december 2015
2019-03-15 science/MOOSE-neural-simulator: Qt4 has been EOL since december 2015
2019-03-15 science/avogadro: Qt4 has been EOL since december 2015
2019-03-15 science/openstructure: Qt4 has been EOL since december 2015
2019-03-15 science/py-veusz: Qt4 has been EOL since december 2015
2019-03-15 science/qtresistors: Qt4 has been EOL since december 2015
2019-03-15 security/keepassx2: Qt4 has been EOL since december 2015
2019-03-15 security/kqoauth: Qt4 has been EOL since december 2015
2019-03-15 security/tpmmanager: Qt4 has been EOL since december 2015
2019-03-15 sysutils/android-file-transfer-qt4: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bacula9-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/policykit-qt: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qpxtool: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qsynergy: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qzeitgeist: Qt4 has been EOL since december 2015
2019-03-15 sysutils/searchmonkey: Qt4 has been EOL since december 2015
2019-03-15 sysutils/unetbootin: Qt4 has been EOL since december 2015
2019-03-15 textproc/beediff: Qt4 has been EOL since december 2015
2019-03-15 textproc/dixit: Qt4 has been EOL since december 2015
2019-03-15 textproc/goldendict: Qt4 has been EOL since december 2015
2019-03-15 textproc/ibus-qt: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-clucene: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns-tool: Qt4 has been EOL since december 2015
2019-03-15 textproc/scim-bridge-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/uim-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/xxdiff: Qt4 has been EOL since december 2015
2019-03-15 www/aria2fe: Qt4 has been EOL since december 2015
2019-03-15 www/cutycapt: Qt4 has been EOL since december 2015
2019-03-15 www/py-qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qupzilla-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11/leechcraft: Qt4 has been EOL since december 2015
2019-03-15 x11/py-qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qimageblitz: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-graphicssystems-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-inputmethods: Qt4 has been EOL since december 2015
2019-03-15 x11/qxkb: Qt4 has been EOL since december 2015
2019-03-15 x11-fonts/fontmatrix: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-float: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-phase: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-quantumstyle: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qtcurve-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/attica: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/py-qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4pas: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/soqt: Qt4 has been EOL since december 2015
2019-03-15 x11-wm/qlwm: Qt4 has been EOL since december 2015

Approved by:	portmgr (implicit)

39 files changed, 0 insertions, 2940 deletions

diff --git a/science/MOOSE-neural-simulator/Makefile b/science/MOOSE-neural-simulator/Makefile
deleted file mode 100644
index 01c1c130cd1e..000000000000
--- a/science/MOOSE-neural-simulator/Makefile
+++ /dev/null
@@ -1,48 +0,0 @@
-# Created by: Yuri Victorovich <yuri@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	MOOSE-neural-simulator
-DISTVERSION=	3.1.2
-PORTREVISION=	7
-DISTVERSIONSUFFIX=	-382-gc93d23a
-CATEGORIES=	science biology
-
-MAINTAINER=	yuri@FreeBSD.org
-COMMENT=	Multiphysics Object Oriented Simulation Environment
-
-LICENSE=	GPLv3
-LICENSE_FILE=	${WRKSRC}/LICENCE
-
-DEPRECATED=		Qt4 has been EOL since december 2015
-EXPIRATION_DATE=	2019-03-15
-
-LIB_DEPENDS=	libgsl.so:math/gsl \
-		libhdf5.so:science/hdf5 \
-		libsbml.so:biology/libsbml \
-		libsz.so:science/szip
-BUILD_DEPENDS=	bash:shells/bash \
-		${PYNUMPY}
-RUN_DEPENDS=	${PYNUMPY} \
-		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}networkx>=1.0:math/py-networkx@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}pygraphviz>=0:graphics/py-pygraphviz@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}suds-jurko>=0.4:net/py-suds-jurko@${PY_FLAVOR}
-
-USES=		cmake fortran gettext-runtime pyqt:4 python:2.7
-USE_GITHUB=	yes
-GH_ACCOUNT=	BhallaLab
-GH_PROJECT=	moose
-USE_PYQT=	core_run gui_run test_run
-
-OPTIONS_DEFINE=	EXAMPLES
-
-PORTEXAMPLES=	*
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|DESTINATION lib/moose/moose-examples|DESTINATION share/examples/${PORTNAME}|' ${WRKSRC}/CMakeLists.txt
-	@${REINPLACE_CMD} -e 's|\.\./moose-examples/|${EXAMPLESDIR}/|' ${WRKSRC}/moose-gui/mgui.py
-
-post-install:
-	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/moose/_moose.so
-
-.include <bsd.port.mk>
diff --git a/science/MOOSE-neural-simulator/distinfo b/science/MOOSE-neural-simulator/distinfo
deleted file mode 100644
index b89c98b074af..000000000000
--- a/science/MOOSE-neural-simulator/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1513628618
-SHA256 (BhallaLab-moose-3.1.2-382-gc93d23a_GH0.tar.gz) = d338ba3b01b1569603dd5c6f12d47c576daf04323b845263ea968d2ab3bab47d
-SIZE (BhallaLab-moose-3.1.2-382-gc93d23a_GH0.tar.gz) = 20350741
diff --git a/science/MOOSE-neural-simulator/files/patch-moose-gui_mgui.py b/science/MOOSE-neural-simulator/files/patch-moose-gui_mgui.py
deleted file mode 100644
index 6eddd469694e..000000000000
--- a/science/MOOSE-neural-simulator/files/patch-moose-gui_mgui.py
+++ /dev/null
@@ -1,10 +0,0 @@
---- moose-gui/mgui.py.orig	2017-12-16 19:10:20 UTC
-+++ moose-gui/mgui.py
-@@ -44,6 +44,7 @@
- #
- 
- # Code:
-+import numpy.core.multiarray # doesn't work without it for some reason
- import imp
- import inspect
- import code
diff --git a/science/MOOSE-neural-simulator/pkg-descr b/science/MOOSE-neural-simulator/pkg-descr
deleted file mode 100644
index cb88ddb4c907..000000000000
--- a/science/MOOSE-neural-simulator/pkg-descr
+++ /dev/null
@@ -1,10 +0,0 @@
-MOOSE is designed to simulate neural systems ranging from biochemical signaling
-to complex models of single neurons, circuits, and large networks. A typical
-use case is to model neural activity-driven synaptic plasticity, in which
-network activity to synapses triggers biochemical reaction-diffusion events,
-which in turn modulate ion channels to give rise to synaptic plasticity.
-MOOSE can operate at many levels of detail, from stochastic chemical
-computations, to multicompartment single-neuron models, to spiking neuron
-network models.
-
-WWW: http://moose.ncbs.res.in
diff --git a/science/MOOSE-neural-simulator/pkg-plist b/science/MOOSE-neural-simulator/pkg-plist
deleted file mode 100644
index b513ac3e7524..000000000000
--- a/science/MOOSE-neural-simulator/pkg-plist
+++ /dev/null
@@ -1,204 +0,0 @@
-bin/moosegui
-lib/moose/gui/.travis.yml
-lib/moose/gui/MdiArea.py
-lib/moose/gui/PlotWidgetContainer.py
-lib/moose/gui/README
-lib/moose/gui/README.md
-lib/moose/gui/RunWidget.py
-lib/moose/gui/SettingsDialog.py
-lib/moose/gui/__init__.py
-lib/moose/gui/about.html
-lib/moose/gui/bioModels/getAllCuratedModelsId.pkl
-lib/moose/gui/bioModels/getModelsIdByChEBI.pkl
-lib/moose/gui/bioModels/getModelsIdByChEBIId.pkl
-lib/moose/gui/biomodelsclient.py
-lib/moose/gui/checkcombobox.py
-lib/moose/gui/colormaps/fire
-lib/moose/gui/colormaps/greenfire
-lib/moose/gui/colormaps/grey
-lib/moose/gui/colormaps/heat
-lib/moose/gui/colormaps/jet
-lib/moose/gui/colormaps/rainbow2.pkl
-lib/moose/gui/colormaps/redhot
-lib/moose/gui/config.py
-lib/moose/gui/configwidget.py
-lib/moose/gui/defaults.py
-lib/moose/gui/global_constants.py
-lib/moose/gui/icons/QMdiBackground.png
-lib/moose/gui/icons/add.png
-lib/moose/gui/icons/add_graph.png
-lib/moose/gui/icons/arrow.png
-lib/moose/gui/icons/arrow_undo.png
-lib/moose/gui/icons/classIcon/BufPool.png
-lib/moose/gui/icons/classIcon/CubeMesh.png
-lib/moose/gui/icons/classIcon/CylMesh.png
-lib/moose/gui/icons/classIcon/Enz.png
-lib/moose/gui/icons/classIcon/FuncPool.png
-lib/moose/gui/icons/classIcon/Function.png
-lib/moose/gui/icons/classIcon/MMenz.png
-lib/moose/gui/icons/classIcon/Pool.png
-lib/moose/gui/icons/classIcon/Reac.png
-lib/moose/gui/icons/classIcon/StimulusTable.png
-lib/moose/gui/icons/classIcon/SumFunc.png
-lib/moose/gui/icons/clone.svg
-lib/moose/gui/icons/connection.png
-lib/moose/gui/icons/continue.png
-lib/moose/gui/icons/delete.svg
-lib/moose/gui/icons/delete_graph.png
-lib/moose/gui/icons/grid.png
-lib/moose/gui/icons/hand.png
-lib/moose/gui/icons/help.png
-lib/moose/gui/icons/hopfield.png
-lib/moose/gui/icons/list.png
-lib/moose/gui/icons/moose_icon.png
-lib/moose/gui/icons/moose_icon_64x64.png
-lib/moose/gui/icons/moose_icon_large.png
-lib/moose/gui/icons/move.svg
-lib/moose/gui/icons/plot.svg
-lib/moose/gui/icons/reset.png
-lib/moose/gui/icons/run.png
-lib/moose/gui/icons/runtime.png
-lib/moose/gui/icons/squid.png
-lib/moose/gui/icons/stop.png
-lib/moose/gui/icons/straight_connector_with_filled_circles.png
-lib/moose/gui/icons/wrench.png
-lib/moose/gui/loaderdialog.py
-lib/moose/gui/mexception.py
-lib/moose/gui/mgui.py
-lib/moose/gui/mload.py
-lib/moose/gui/mplot.py
-lib/moose/gui/mplugin.py
-lib/moose/gui/msearch.py
-lib/moose/gui/mtoolbutton.py
-lib/moose/gui/mtree.py
-lib/moose/gui/mtypes.py
-lib/moose/gui/neuroextractor.py
-lib/moose/gui/newmodeldialog.py
-lib/moose/gui/objectedit.py
-lib/moose/gui/plugins/NeuroKit.py
-lib/moose/gui/plugins/NeuroKitEditor.py
-lib/moose/gui/plugins/NeuroKitRunner.py
-lib/moose/gui/plugins/NeuroKitVisualizer.py
-lib/moose/gui/plugins/PreferencesPresenter.py
-lib/moose/gui/plugins/PreferencesView.py
-lib/moose/gui/plugins/README
-lib/moose/gui/plugins/Runner.py
-lib/moose/gui/plugins/__init__.py
-lib/moose/gui/plugins/buildkkit.py
-lib/moose/gui/plugins/constants.py
-lib/moose/gui/plugins/datastore/preferences.json
-lib/moose/gui/plugins/default.py
-lib/moose/gui/plugins/defines.py
-lib/moose/gui/plugins/kkit.py
-lib/moose/gui/plugins/kkitCalcArrow.py
-lib/moose/gui/plugins/kkitOrdinateUtil.py
-lib/moose/gui/plugins/kkitQGraphics.py
-lib/moose/gui/plugins/kkitUtil.py
-lib/moose/gui/plugins/kkitViewcontrol.py
-lib/moose/gui/plugins/list.txt
-lib/moose/gui/plugins/modelBuild.py
-lib/moose/gui/plugins/setsolver.py
-lib/moose/gui/plugins/test_plotwidget.py
-lib/moose/gui/scishell.py
-lib/moose/gui/shell.py
-lib/moose/gui/sidebar.py
-lib/moose/gui/suds/__init__.py
-lib/moose/gui/suds/argparser.py
-lib/moose/gui/suds/bindings/__init__.py
-lib/moose/gui/suds/bindings/binding.py
-lib/moose/gui/suds/bindings/document.py
-lib/moose/gui/suds/bindings/multiref.py
-lib/moose/gui/suds/bindings/rpc.py
-lib/moose/gui/suds/builder.py
-lib/moose/gui/suds/cache.py
-lib/moose/gui/suds/client.py
-lib/moose/gui/suds/metrics.py
-lib/moose/gui/suds/mx/__init__.py
-lib/moose/gui/suds/mx/appender.py
-lib/moose/gui/suds/mx/basic.py
-lib/moose/gui/suds/mx/core.py
-lib/moose/gui/suds/mx/encoded.py
-lib/moose/gui/suds/mx/literal.py
-lib/moose/gui/suds/mx/typer.py
-lib/moose/gui/suds/options.py
-lib/moose/gui/suds/plugin.py
-lib/moose/gui/suds/properties.py
-lib/moose/gui/suds/reader.py
-lib/moose/gui/suds/resolver.py
-lib/moose/gui/suds/sax/__init__.py
-lib/moose/gui/suds/sax/attribute.py
-lib/moose/gui/suds/sax/date.py
-lib/moose/gui/suds/sax/document.py
-lib/moose/gui/suds/sax/element.py
-lib/moose/gui/suds/sax/enc.py
-lib/moose/gui/suds/sax/parser.py
-lib/moose/gui/suds/sax/text.py
-lib/moose/gui/suds/servicedefinition.py
-lib/moose/gui/suds/serviceproxy.py
-lib/moose/gui/suds/soaparray.py
-lib/moose/gui/suds/store.py
-lib/moose/gui/suds/sudsobject.py
-lib/moose/gui/suds/transport/__init__.py
-lib/moose/gui/suds/transport/http.py
-lib/moose/gui/suds/transport/https.py
-lib/moose/gui/suds/transport/options.py
-lib/moose/gui/suds/umx/__init__.py
-lib/moose/gui/suds/umx/attrlist.py
-lib/moose/gui/suds/umx/basic.py
-lib/moose/gui/suds/umx/core.py
-lib/moose/gui/suds/umx/encoded.py
-lib/moose/gui/suds/umx/typed.py
-lib/moose/gui/suds/version.py
-lib/moose/gui/suds/wsdl.py
-lib/moose/gui/suds/wsse.py
-lib/moose/gui/suds/xsd/__init__.py
-lib/moose/gui/suds/xsd/deplist.py
-lib/moose/gui/suds/xsd/doctor.py
-lib/moose/gui/suds/xsd/query.py
-lib/moose/gui/suds/xsd/schema.py
-lib/moose/gui/suds/xsd/sxbase.py
-lib/moose/gui/suds/xsd/sxbasic.py
-lib/moose/gui/suds/xsd/sxbuiltin.py
-lib/moose/gui/utils.py
-%%PYTHON_SITELIBDIR%%/moose-3.2.git-py%%PYTHON_VER%%.egg-info
-%%PYTHON_SITELIBDIR%%/moose/OrderedDict.py
-%%PYTHON_SITELIBDIR%%/moose/SBML/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/SBML/readSBML.py
-%%PYTHON_SITELIBDIR%%/moose/SBML/validation.py
-%%PYTHON_SITELIBDIR%%/moose/SBML/writeSBML.py
-%%PYTHON_SITELIBDIR%%/moose/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/_moose.so
-%%PYTHON_SITELIBDIR%%/moose/alternate.py
-%%PYTHON_SITELIBDIR%%/moose/chemMerge/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/chemMerge/merge.py
-%%PYTHON_SITELIBDIR%%/moose/chemMerge/mtypes.py
-%%PYTHON_SITELIBDIR%%/moose/chemUtil/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/chemUtil/add_Delete_ChemicalSolver.py
-%%PYTHON_SITELIBDIR%%/moose/chemUtil/chemConnectUtil.py
-%%PYTHON_SITELIBDIR%%/moose/chemUtil/graphUtils.py
-%%PYTHON_SITELIBDIR%%/moose/constants.py
-%%PYTHON_SITELIBDIR%%/moose/genesis/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/genesis/writeKkit.py
-%%PYTHON_SITELIBDIR%%/moose/graph_utils.py
-%%PYTHON_SITELIBDIR%%/moose/graphutil.py
-%%PYTHON_SITELIBDIR%%/moose/hdfutil.py
-%%PYTHON_SITELIBDIR%%/moose/methods_utils.py
-%%PYTHON_SITELIBDIR%%/moose/moose.py
-%%PYTHON_SITELIBDIR%%/moose/moose_config.py
-%%PYTHON_SITELIBDIR%%/moose/moose_constants.py
-%%PYTHON_SITELIBDIR%%/moose/moose_test.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/ChannelML.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/MorphML.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/NetworkML.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/NeuroML.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/__init__.py
-%%PYTHON_SITELIBDIR%%/moose/neuroml/utils.py
-%%PYTHON_SITELIBDIR%%/moose/optimizer_interface.py
-%%PYTHON_SITELIBDIR%%/moose/plot_utils.py
-%%PYTHON_SITELIBDIR%%/moose/print_utils.py
-%%PYTHON_SITELIBDIR%%/moose/recording.py
-%%PYTHON_SITELIBDIR%%/moose/utils.py
-%%PYTHON_SITELIBDIR%%/rdesigneur/__init__.py
-%%PYTHON_SITELIBDIR%%/rdesigneur/rdesigneur.py
-%%PYTHON_SITELIBDIR%%/rdesigneur/rdesigneurProtos.py
-%%PYTHON_SITELIBDIR%%/rdesigneur/rmoogli.py
diff --git a/science/Makefile b/science/Makefile
index 248a9ba2b094..80c8d5f9361b 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -6,7 +6,6 @@
     SUBDIR += 2d-rewriter
     SUBDIR += ALPSCore
     SUBDIR += InsightToolkit
-    SUBDIR += MOOSE-neural-simulator
     SUBDIR += PETSc
     SUBDIR += R-cran-AMORE
     SUBDIR += R-cran-DCluster
@@ -29,7 +28,6 @@
     SUBDIR += antioch
     SUBDIR += atom
     SUBDIR += atompaw
-    SUBDIR += avogadro
     SUBDIR += avogadro2
     SUBDIR += avogadrolibs
     SUBDIR += bagel
@@ -172,7 +170,6 @@
     SUBDIR += openkim
     SUBDIR += openmx
     SUBDIR += opensim-core
-    SUBDIR += openstructure
     SUBDIR += opsin
     SUBDIR += p5-Algorithm-SVMLight
     SUBDIR += p5-Chemistry-3DBuilder
@@ -268,7 +265,6 @@
     SUBDIR += py-scipy
     SUBDIR += py-scoria
     SUBDIR += py-spglib
-    SUBDIR += py-veusz
     SUBDIR += py-ws2300
     SUBDIR += pybrain
     SUBDIR += pycdf
@@ -276,7 +272,6 @@
     SUBDIR += qbox
     SUBDIR += qcl
     SUBDIR += qmcpack
-    SUBDIR += qtresistors
     SUBDIR += quantum-espresso
     SUBDIR += quantum-espresso-pseudopotentials
     SUBDIR += qwalk
diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
deleted file mode 100644
index 8e11134cf4c2..000000000000
--- a/science/avogadro/Makefile
+++ /dev/null
@@ -1,72 +0,0 @@
-# Created by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
-# $FreeBSD$
-
-PORTNAME=	avogadro
-DISTVERSION=	1.2.0
-PORTREVISION=	2
-CATEGORIES=	science
-MASTER_SITES=	SF
-
-MAINTAINER=	kde@FreeBSD.org
-COMMENT=	Advanced molecular editor and viewer
-
-LICENSE=	GPLv2+
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-DEPRECATED=		Qt4 has been EOL since december 2015
-EXPIRATION_DATE=	2019-03-15
-
-CONFLICTS_INSTALL=	libmsym
-
-BROKEN_armv6=		fails to compile: eigen2/Eigen/src/Core/Assign.h: you mixed different numeric types in 'Eigen::ei_static_assert<false>'
-BROKEN_armv7=		fails to compile: eigen2/Eigen/src/Core/Assign.h: you mixed different numeric types in 'Eigen::ei_static_assert<false>'
-
-LIB_DEPENDS=	libopenbabel.so:science/openbabel
-
-# We need to add a RUN_DEPENDS on eigen2, as the cmake file shiped with
-# avogadro to use it, contains 'find_package(Eigen2 REQUIRED)'.
-USES=		cmake desktop-file-utils eigen:2,build,run gl pkgconfig qt:4
-USE_GL=		glu gl
-USE_QT=		corelib gui network opengl \
-		linguisttools_build moc_build qmake_build rcc_build uic_build
-CMAKE_ARGS=	-DENABLE_GLSL=OFF \
-		-DQT_MKSPECS_RELATIVE=share/qt4/mkspecs
-USE_XORG=	x11
-USE_LDCONFIG=	yes
-
-CFLAGS+=	-idirafter ${LOCALBASE}/include/eigen2 \
-		-idirafter ${LOCALBASE}/include \
-		-I${LOCALBASE}/include
-LDFLAGS+=	-L${LOCALBASE}/lib
-
-OPTIONS_DEFINE=	PYTHON
-OPTIONS_DEFAULT=PYTHON
-OPTIONS_SUB=	yes
-
-PYTHON_USES=		python:2.7
-PYTHON_BUILD_DEPENDS=	${PYNUMPY} \
-			${PYTHON_PKGNAMEPREFIX}sip>0:devel/py-sip@${PY_FLAVOR}
-PYTHON_LIB_DEPENDS=	${PY_BOOST}
-PYTHON_RUN_DEPENDS=	${PYNUMPY} \
-			${PYTHON_PKGNAMEPREFIX}sip>0:devel/py-sip@${PY_FLAVOR}
-PYTHON_CMAKE_ON=	-DENABLE_PYTHON=ON \
-			-DPYTHON_INCLUDE_DIR:PATH=${WRKDIR}/include/${PYTHON_VERSION}
-PYTHON_CMAKE_OFF=	-DENABLE_PYTHON=OFF
-
-post-patch:
-	@${REINPLACE_CMD} -e \
-		'/FLAGS_RELEASE/s|^|#| ; \
-		 /PC_FILES/s|$${LIB_INSTALL_DIR}|libdata|' ${WRKSRC}/CMakeLists.txt
-	@${REINPLACE_CMD} -e \
-		's|share/man|man|' ${WRKSRC}/doc/CMakeLists.txt
-
-pre-configure-PYTHON-on:
-	@${MKDIR} ${WRKDIR}/include/${PYTHON_VERSION}
-	@${FIND} ${PYTHON_INCLUDEDIR} ! -name "pyport.h" -type f \
-		-maxdepth 1 | ${XARGS} -J % ${LN} -sf % \
-		${WRKDIR}/include/${PYTHON_VERSION}
-	@${SED} -e 's|^#ifdef _PY_PORT_CTYPE_UTF8_ISSUE|#if 0|' \
-		${PYTHON_INCLUDEDIR}/pyport.h > \
-		${WRKDIR}/include/${PYTHON_VERSION}/pyport.h
-
-.include <bsd.port.mk>
diff --git a/science/avogadro/distinfo b/science/avogadro/distinfo
deleted file mode 100644
index 669029740d37..000000000000
--- a/science/avogadro/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1539715101
-SHA256 (avogadro-1.2.0.tar.gz) = 6453e36e8ae3e61655cbe062df6d6fa6b2409122c7b5abc0a6f1d410a181640b
-SIZE (avogadro-1.2.0.tar.gz) = 16779635
diff --git a/science/avogadro/files/patch-CMakeLists.txt b/science/avogadro/files/patch-CMakeLists.txt
deleted file mode 100644
index c64c3b974eee..000000000000
--- a/science/avogadro/files/patch-CMakeLists.txt
+++ /dev/null
@@ -1,53 +0,0 @@
-Explicitly look for X11 when using it.
-
-This fixes the build with CMake 3.2, whose FindOpenGL.cmake stopped
-calling find_package(X11).
-
-Instead, do that ourselves when Q_WS_X11 is true, since that is when we
-already try to link against libX11.
-
-Sent upstream: https://github.com/cryos/avogadro/pull/13
---- CMakeLists.txt.orig	2016-06-08 14:19:45 UTC
-+++ CMakeLists.txt
-@@ -114,7 +114,7 @@ if (CMAKE_COMPILER_IS_GNUCXX)
-   endif()
-   # Set up additional build flags for particular build types. These will be added to CMAKE_CXX_FLAGS,
-   # they will not replace them.
--  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
-+#  set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
-   set(CMAKE_CXX_FLAGS_RELWITHDEBINFO
-     "${CMAKE_CXX_FLAGS_RELWITHDEBINFO} ${CMAKE_CXX_FLAGS_WARN}")
-   set(CMAKE_CXX_FLAGS_DEBUG   "-g3 -fno-inline ${CMAKE_CXX_FLAGS_WARN}")
-@@ -196,8 +196,8 @@ if(${CMAKE_CXX_COMPILER_ID} MATCHES Inte
-     endif()
-   endif()
- 
--  set(CMAKE_C_FLAGS_RELEASE "-O3 -ipo1 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
--  set(CMAKE_CXX_FLAGS_RELEASE "-O3 -ipo1 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
-+#  set(CMAKE_C_FLAGS_RELEASE "-O3 -ipo1 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
-+#  set(CMAKE_CXX_FLAGS_RELEASE "-O3 -ipo1 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,-s")
- 
-   set(CMAKE_CXX_FLAGS_RELWITHDEBINFO
-     "${CMAKE_CXX_FLAGS_RELWITHDEBINFO} ${CMAKE_CXX_FLAGS_WARN}")
-@@ -231,7 +231,11 @@ if(NOT Linguist_FOUND)
-   message(WARNING " Qt4 Linguist not found, please install it if you want Avogadro translations")
- endif()
- 
--find_package(Eigen3) # find and setup Eigen3 if available
-+if(Q_WS_X11)
-+  find_package(X11 REQUIRED) # avogadro/src/main.cpp calls XInitThread().
-+endif()
-+
-+#find_package(Eigen3) # find and setup Eigen3 if available # not ready for Eigen3, see https://github.com/cryos/avogadro/issues/915
- if(NOT EIGEN3_FOUND)
-    message(STATUS "Cannot find Eigen3, trying Eigen2")
-    find_package(Eigen2 REQUIRED) # Some version is required
-@@ -521,7 +525,7 @@ if(UNIX)
-     "${CMAKE_CURRENT_SOURCE_DIR}/avogadro.pc.in"
-     "${CMAKE_CURRENT_BINARY_DIR}/avogadro.pc" @ONLY)
-   set(PC_FILES "${CMAKE_CURRENT_BINARY_DIR}/avogadro.pc")
--  install(FILES ${PC_FILES} DESTINATION ${LIB_INSTALL_DIR}/pkgconfig)
-+  install(FILES ${PC_FILES} DESTINATION libdata/pkgconfig)
- endif()
- 
- # avopkg
diff --git a/science/avogadro/files/patch-libavogadro__src__camera.cpp b/science/avogadro/files/patch-libavogadro__src__camera.cpp
deleted file mode 100644
index 6346adf6d6c0..000000000000
--- a/science/avogadro/files/patch-libavogadro__src__camera.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- libavogadro/src/camera.cpp.orig	2016-06-08 14:19:45 UTC
-+++ libavogadro/src/camera.cpp
-@@ -36,6 +36,8 @@
- # include <GL/glu.h>
- #endif
- 
-+#include <GL/glu.h>
-+
- using namespace Eigen;
- 
- namespace Avogadro
diff --git a/science/avogadro/files/patch-libavogadro__src__glpainter_p.cpp b/science/avogadro/files/patch-libavogadro__src__glpainter_p.cpp
deleted file mode 100644
index c6c3c0443306..000000000000
--- a/science/avogadro/files/patch-libavogadro__src__glpainter_p.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- libavogadro/src/glpainter_p.cpp.orig	2016-06-08 14:19:45 UTC
-+++ libavogadro/src/glpainter_p.cpp
-@@ -53,6 +53,8 @@
- # include <GL/glu.h>
- #endif
- 
-+#include <GL/glu.h>
-+
- namespace Avogadro
- {
- 
diff --git a/science/avogadro/files/patch-libavogadro__src__glwidget.cpp b/science/avogadro/files/patch-libavogadro__src__glwidget.cpp
deleted file mode 100644
index 3e3337fc819f..000000000000
--- a/science/avogadro/files/patch-libavogadro__src__glwidget.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- libavogadro/src/glwidget.cpp.orig	2016-06-08 14:19:45 UTC
-+++ libavogadro/src/glwidget.cpp
-@@ -84,6 +84,8 @@
-   #include <GL/glew.h>
- #endif
- 
-+#include <GL/glu.h>
-+
- #include <cstdio>
- #include <vector>
- #include <cstdlib>
diff --git a/science/avogadro/files/patch-libavogadro__src__tools__selectrotatetool.cpp b/science/avogadro/files/patch-libavogadro__src__tools__selectrotatetool.cpp
deleted file mode 100644
index 53e538cf4065..000000000000
--- a/science/avogadro/files/patch-libavogadro__src__tools__selectrotatetool.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- libavogadro/src/tools/selectrotatetool.cpp.orig	2016-06-08 14:19:45 UTC
-+++ libavogadro/src/tools/selectrotatetool.cpp
-@@ -57,6 +57,8 @@
- # include <GL/glu.h>
- #endif
- 
-+#include <GL/glu.h>
-+
- using namespace std;
- using namespace OpenBabel;
- using namespace Eigen;
diff --git a/science/avogadro/files/patch-libavogadro_src_extensions_crystallography_crystallographyextension.cpp b/science/avogadro/files/patch-libavogadro_src_extensions_crystallography_crystallographyextension.cpp
deleted file mode 100644
index 656e76956d5c..000000000000
--- a/science/avogadro/files/patch-libavogadro_src_extensions_crystallography_crystallographyextension.cpp
+++ /dev/null
@@ -1,14 +0,0 @@
---- libavogadro/src/extensions/crystallography/crystallographyextension.cpp.orig	2016-06-08 14:19:45 UTC
-+++ libavogadro/src/extensions/crystallography/crystallographyextension.cpp
-@@ -53,6 +53,11 @@
- #include <openbabel/generic.h>
- #include <openbabel/mol.h>
- 
-+// fix for lang/gcc5
-+#if __GNUC__ == 5 && __GNUC_MINOR__ == 4
-+#undef minor
-+#endif
-+
- #include <Eigen/LU>
- 
- #include <QtGui/QClipboard>
diff --git a/science/avogadro/files/patch-libavogadro_src_extensions_symmetry_libmsym_src_orbital.c b/science/avogadro/files/patch-libavogadro_src_extensions_symmetry_libmsym_src_orbital.c
deleted file mode 100644
index 2935ccb7a9f4..000000000000
--- a/science/avogadro/files/patch-libavogadro_src_extensions_symmetry_libmsym_src_orbital.c
+++ /dev/null
@@ -1,18 +0,0 @@
---- libavogadro/src/extensions/symmetry/libmsym/src/orbital.c.orig	2018-10-16 20:56:21 UTC
-+++ libavogadro/src/extensions/symmetry/libmsym/src/orbital.c
-@@ -67,13 +67,13 @@ msym_error_t orbitalFromQuantumNumbers(i
-         }
-         case 2 : {
-             //o->v = dpolynomial[m+l];
--            char *d = (signbit(m) == 1 ? "-" : "+");
-+            char *d = (signbit((double)m) == 1 ? "-" : "+"); // signbit is misused, see https://github.com/cryos/avogadro/issues/916
-             snprintf(o->name, sizeof(o->name), "%dd%d%s",n,abs(m),d);
-             break;
-         }
-         default : {
-             char t = 'f' - 3 + l;
--            char *d = (signbit(m) == 1 ? "-" : "+");
-+            char *d = (signbit((double)m) == 1 ? "-" : "+"); // signbit is misused, see https://github.com/cryos/avogadro/issues/916
-             snprintf(o->name, sizeof(o->name), "%d%c%d%s",n,t,abs(m),d);
-         }
-     }
diff --git a/science/avogadro/pkg-descr b/science/avogadro/pkg-descr
deleted file mode 100644
index 33bffa4acac3..000000000000
--- a/science/avogadro/pkg-descr
+++ /dev/null
@@ -1,6 +0,0 @@
-Avogadro is an advanced molecular editor designed for cross-platform use in
-computational chemistry, molecular modeling, bioinformatics, materials science,
-and related areas. It offers flexible rendering and a powerful plugin
-architecture.
-
-WWW: http://avogadro.cc/
diff --git a/science/avogadro/pkg-plist b/science/avogadro/pkg-plist
deleted file mode 100644
index 1781a5a18474..000000000000
--- a/science/avogadro/pkg-plist
+++ /dev/null
@@ -1,1165 +0,0 @@
-bin/avogadro
-bin/avopkg
-bin/qube
-include/avogadro/animation.h
-include/avogadro/atom.h
-include/avogadro/bond.h
-include/avogadro/camera.h
-include/avogadro/color.h
-include/avogadro/color3f.h
-include/avogadro/colorbutton.h
-include/avogadro/config.h
-include/avogadro/cube.h
-include/avogadro/dockextension.h
-include/avogadro/dockwidget.h
-include/avogadro/elementtranslator.h
-include/avogadro/engine.h
-include/avogadro/extension.h
-include/avogadro/fragment.h
-include/avogadro/glhit.h
-include/avogadro/global.h
-include/avogadro/glwidget.h
-include/avogadro/idlist.h
-include/avogadro/mesh.h
-include/avogadro/meshgenerator.h
-include/avogadro/molecule.h
-include/avogadro/moleculefile.h
-include/avogadro/navigate.h
-include/avogadro/neighborlist.h
-include/avogadro/obeigenconv.h
-include/avogadro/painter.h
-include/avogadro/painterdevice.h
-include/avogadro/periodictableview.h
-include/avogadro/plotaxis.h
-include/avogadro/plotobject.h
-include/avogadro/plotpoint.h
-include/avogadro/plotwidget.h
-include/avogadro/plugin.h
-include/avogadro/pluginmanager.h
-include/avogadro/primitive.h
-include/avogadro/primitivelist.h
-include/avogadro/protein.h
-%%PYTHON%%include/avogadro/pythonerror.h
-%%PYTHON%%include/avogadro/pythoninterpreter.h
-%%PYTHON%%include/avogadro/pythonscript.h
-include/avogadro/residue.h
-include/avogadro/textmatrixeditor.h
-include/avogadro/tool.h
-include/avogadro/toolgroup.h
-include/avogadro/undosequence.h
-include/avogadro/zmatrix.h
-include/libmsym/msym.h
-include/libmsym/msym_error.h
-lib/avogadro/1_2/AvogadroUse.cmake
-lib/avogadro/1_2/cmake/FindEigen2.cmake
-lib/avogadro/1_2/cmake/FindEigen3.cmake
-lib/avogadro/1_2/cmake/FindGLEW.cmake
-lib/avogadro/1_2/colors/atomindexcolor.so
-lib/avogadro/1_2/colors/chargecolor.so
-lib/avogadro/1_2/colors/customcolor.so
-lib/avogadro/1_2/colors/distancecolor.so
-lib/avogadro/1_2/colors/residuecolor.so
-lib/avogadro/1_2/colors/smartscolor.so
-lib/avogadro/1_2/engines/axesengine.so
-lib/avogadro/1_2/engines/cartoonengine.so
-lib/avogadro/1_2/engines/dipoleengine.so
-lib/avogadro/1_2/engines/forceengine.so
-lib/avogadro/1_2/engines/hbondengine.so
-lib/avogadro/1_2/engines/labelengine.so
-lib/avogadro/1_2/engines/polygonengine.so
-lib/avogadro/1_2/engines/qtaimengine.so
-lib/avogadro/1_2/engines/ribbonengine.so
-lib/avogadro/1_2/engines/ringengine.so
-lib/avogadro/1_2/engines/simplewireengine.so
-lib/avogadro/1_2/engines/sphereengine.so
-lib/avogadro/1_2/engines/stickengine.so
-lib/avogadro/1_2/engines/surfaceengine.so
-lib/avogadro/1_2/engines/wireengine.so
-lib/avogadro/1_2/extensions/animationextension.so
-lib/avogadro/1_2/extensions/cartesianextension.so
-lib/avogadro/1_2/extensions/crystallographyextension.so
-lib/avogadro/1_2/extensions/fileimportextension.so
-lib/avogadro/1_2/extensions/forcefieldextension.so
-lib/avogadro/1_2/extensions/gamessextension.so
-lib/avogadro/1_2/extensions/gl2psextension.so
-lib/avogadro/1_2/extensions/h2methylextension.so
-lib/avogadro/1_2/extensions/hydrogensextension.so
-lib/avogadro/1_2/extensions/inputfileextension.so
-lib/avogadro/1_2/extensions/insertdnaextension.so
-lib/avogadro/1_2/extensions/insertfragmentextension.so
-lib/avogadro/1_2/extensions/insertpeptideextension.so
-lib/avogadro/1_2/extensions/invertchiralextension.so
-lib/avogadro/1_2/extensions/molecularpropextension.so
-lib/avogadro/1_2/extensions/networkfetchextension.so
-lib/avogadro/1_2/extensions/orbitalextension.so
-lib/avogadro/1_2/extensions/orcaextension.so
-lib/avogadro/1_2/extensions/povrayextension.so
-lib/avogadro/1_2/extensions/propextension.so
-%%PYTHON%%lib/avogadro/1_2/extensions/pythonterminal.so
-lib/avogadro/1_2/extensions/qtaimextension.so
-lib/avogadro/1_2/extensions/selectextension.so
-lib/avogadro/1_2/extensions/spectraextension.so
-lib/avogadro/1_2/extensions/supercellextension.so
-lib/avogadro/1_2/extensions/surfaceextension.so
-lib/avogadro/1_2/extensions/swcntbuilderextension.so
-lib/avogadro/1_2/extensions/symmetryextension.so
-lib/avogadro/1_2/extensions/vibrationextension.so
-lib/avogadro/1_2/extensions/vrmlextension.so
-lib/avogadro/1_2/tools/aligntool.so
-lib/avogadro/1_2/tools/autoopttool.so
-lib/avogadro/1_2/tools/autorotatetool.so
-lib/avogadro/1_2/tools/bondcentrictool.so
-lib/avogadro/1_2/tools/clickmeasuretool.so
-lib/avogadro/1_2/tools/drawtool.so
-lib/avogadro/1_2/tools/manipulatetool.so
-lib/avogadro/1_2/tools/selectrotatetool.so
-lib/avogadro/AvogadroConfig.cmake
-lib/avogadro/AvogadroConfigVersion.cmake
-lib/avogadro/AvogadroTargets-%%CMAKE_BUILD_TYPE%%.cmake
-lib/avogadro/AvogadroTargets.cmake
-lib/cmake/libmsym/libmsymConfig.cmake
-lib/cmake/libmsym/libmsymConfigVersion.cmake
-lib/cmake/libmsym/libmsymTargets-%%CMAKE_BUILD_TYPE%%.cmake
-lib/cmake/libmsym/libmsymTargets.cmake
-lib/libavogadro.so
-lib/libavogadro.so.1
-lib/libavogadro.so.1.2.0
-lib/libavogadro_OpenQube.so
-lib/libavogadro_OpenQube.so.0
-lib/libavogadro_OpenQube.so.0.1.0
-lib/libmsym.a
-%%PYTHON%%%%PYTHON_SITELIBDIR%%/Avogadro.so
-libdata/pkgconfig/avogadro.pc
-man/man1/avogadro.1.gz
-man/man1/avopkg.1.gz
-share/applications/avogadro.desktop
-%%DATADIR%%/builder/amino/d-ala.zmat
-%%DATADIR%%/builder/amino/d-arg.zmat
-%%DATADIR%%/builder/amino/d-asn.zmat
-%%DATADIR%%/builder/amino/d-asp.zmat
-%%DATADIR%%/builder/amino/d-cys.zmat
-%%DATADIR%%/builder/amino/d-gln.zmat
-%%DATADIR%%/builder/amino/d-glu.zmat
-%%DATADIR%%/builder/amino/d-his.zmat
-%%DATADIR%%/builder/amino/d-ile.zmat
-%%DATADIR%%/builder/amino/d-leu.zmat
-%%DATADIR%%/builder/amino/d-lys.zmat
-%%DATADIR%%/builder/amino/d-met.zmat
-%%DATADIR%%/builder/amino/d-phe.zmat
-%%DATADIR%%/builder/amino/d-pro.zmat
-%%DATADIR%%/builder/amino/d-ser.zmat
-%%DATADIR%%/builder/amino/d-thr.zmat
-%%DATADIR%%/builder/amino/d-trp.zmat
-%%DATADIR%%/builder/amino/d-tyr.zmat
-%%DATADIR%%/builder/amino/d-val.zmat
-%%DATADIR%%/builder/amino/gly.zmat
-%%DATADIR%%/builder/amino/l-ala.zmat
-%%DATADIR%%/builder/amino/l-arg.zmat
-%%DATADIR%%/builder/amino/l-asn.zmat
-%%DATADIR%%/builder/amino/l-asp.zmat
-%%DATADIR%%/builder/amino/l-cys.zmat
-%%DATADIR%%/builder/amino/l-gln.zmat
-%%DATADIR%%/builder/amino/l-glu.zmat
-%%DATADIR%%/builder/amino/l-his.zmat
-%%DATADIR%%/builder/amino/l-ile.zmat
-%%DATADIR%%/builder/amino/l-leu.zmat
-%%DATADIR%%/builder/amino/l-lys.zmat
-%%DATADIR%%/builder/amino/l-met.zmat
-%%DATADIR%%/builder/amino/l-phe.zmat
-%%DATADIR%%/builder/amino/l-pro.zmat
-%%DATADIR%%/builder/amino/l-pyl.zmat
-%%DATADIR%%/builder/amino/l-sec.zmat
-%%DATADIR%%/builder/amino/l-ser.zmat
-%%DATADIR%%/builder/amino/l-thr.zmat
-%%DATADIR%%/builder/amino/l-trp.zmat
-%%DATADIR%%/builder/amino/l-tyr.zmat
-%%DATADIR%%/builder/amino/l-val.zmat
-%%DATADIR%%/crystals/antimonides/AlSb.cif
-%%DATADIR%%/crystals/antimonides/GaSb.cif
-%%DATADIR%%/crystals/antimonides/InSb.cif
-%%DATADIR%%/crystals/arsenides/AlAs.cif
-%%DATADIR%%/crystals/arsenides/BAs.cif
-%%DATADIR%%/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif
-%%DATADIR%%/crystals/arsenides/CoAs3-Skutterudite.cif
-%%DATADIR%%/crystals/arsenides/GaAs.cif
-%%DATADIR%%/crystals/arsenides/InAs.cif
-%%DATADIR%%/crystals/arsenides/NiAs-Nickeline.cif
-%%DATADIR%%/crystals/carbides/SiC-2H-Moissanite.cif
-%%DATADIR%%/crystals/carbides/SiC-3C-beta.cif
-%%DATADIR%%/crystals/carbides/SiC-6H-alpha.cif
-%%DATADIR%%/crystals/carbides/SiC-Moissanite.cif
-%%DATADIR%%/crystals/carbides/SiC.cif
-%%DATADIR%%/crystals/carbides/W2C.cif
-%%DATADIR%%/crystals/carbides/WC.cif
-%%DATADIR%%/crystals/carbonates/CaCO3-Calcite.cif
-%%DATADIR%%/crystals/carbonates/CaMgC2O6-Dolomite.cif
-%%DATADIR%%/crystals/carbonates/Li2CO3-Zabuyelite.cif
-%%DATADIR%%/crystals/carbonates/MgCO3-Magnesite.cif
-%%DATADIR%%/crystals/carbonates/Na2CO3-Natrite.cif
-%%DATADIR%%/crystals/clays/Al2Si2O9H4-Dickite.cif
-%%DATADIR%%/crystals/clays/Al2Si2O9H4-Kaolinite.cif
-%%DATADIR%%/crystals/clays/Al2Si2O9H4-Nacrite.cif
-%%DATADIR%%/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif
-%%DATADIR%%/crystals/clays/Al4KSi2O12-Illite.cif
-%%DATADIR%%/crystals/clays/AlSi2O6H-Pyrophyllite.cif
-%%DATADIR%%/crystals/clays/Fe2.25Cl0.5H%%PYTHON_VER%%5-Fougerite.cif
-%%DATADIR%%/crystals/clays/FeSi2O6H-Nontronite.cif
-%%DATADIR%%/crystals/clays/Lepidolite.cif
-%%DATADIR%%/crystals/clays/Mg2Al2SiO9H4-Amesite.cif
-%%DATADIR%%/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif
-%%DATADIR%%/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif
-%%DATADIR%%/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif
-%%DATADIR%%/crystals/clays/Zn2SiO5H2-Hemimorphite.cif
-%%DATADIR%%/crystals/elements/Ac-Actinium.cif
-%%DATADIR%%/crystals/elements/Ag-Silver.cif
-%%DATADIR%%/crystals/elements/Al-Aluminum.cif
-%%DATADIR%%/crystals/elements/Am-Americium.cif
-%%DATADIR%%/crystals/elements/Ar-Argon.cif
-%%DATADIR%%/crystals/elements/As-Arsenic.cif
-%%DATADIR%%/crystals/elements/As-Arsenolamprite.cif
-%%DATADIR%%/crystals/elements/Au-Gold.cif
-%%DATADIR%%/crystals/elements/B-Boron.cif
-%%DATADIR%%/crystals/elements/Ba-Barium.cif
-%%DATADIR%%/crystals/elements/Be-Beryllium.cif
-%%DATADIR%%/crystals/elements/Bi-Bismuth.cif
-%%DATADIR%%/crystals/elements/Br-Bromine.cif
-%%DATADIR%%/crystals/elements/C-Diamond.cif
-%%DATADIR%%/crystals/elements/C-Graphite.cif
-%%DATADIR%%/crystals/elements/C-Lonsdaleite.cif
-%%DATADIR%%/crystals/elements/Ca-Calcium-alpha.cif
-%%DATADIR%%/crystals/elements/Ca-Calcium-beta.cif
-%%DATADIR%%/crystals/elements/Ca-Calcium-gamma.cif
-%%DATADIR%%/crystals/elements/Cd-Cadmium.cif
-%%DATADIR%%/crystals/elements/Ce-Cerium.cif
-%%DATADIR%%/crystals/elements/Cl-Chlorine.cif
-%%DATADIR%%/crystals/elements/Co-Cobalt.cif
-%%DATADIR%%/crystals/elements/Cr-Chromium.cif
-%%DATADIR%%/crystals/elements/Cs-Cesium.cif
-%%DATADIR%%/crystals/elements/Cu-Copper.cif
-%%DATADIR%%/crystals/elements/Dy-Dysprosium.cif
-%%DATADIR%%/crystals/elements/Er-Erbium.cif
-%%DATADIR%%/crystals/elements/Eu-Europium.cif
-%%DATADIR%%/crystals/elements/Fe-Iron-alpha.cif
-%%DATADIR%%/crystals/elements/Fe-Iron-beta.cif
-%%DATADIR%%/crystals/elements/Fe-Iron-delta.cif
-%%DATADIR%%/crystals/elements/Fe-Iron-gamma.cif
-%%DATADIR%%/crystals/elements/Ga-Gallium.cif
-%%DATADIR%%/crystals/elements/Gd-Gadolinium.cif
-%%DATADIR%%/crystals/elements/Ge-Germanium.cif
-%%DATADIR%%/crystals/elements/He-Helium.cif
-%%DATADIR%%/crystals/elements/Hf-Hafnium.cif
-%%DATADIR%%/crystals/elements/Ho-Holmium.cif
-%%DATADIR%%/crystals/elements/I-Iodine.cif
-%%DATADIR%%/crystals/elements/In-Indium.cif
-%%DATADIR%%/crystals/elements/Ir-Iridium.cif
-%%DATADIR%%/crystals/elements/K-Potassium.cif
-%%DATADIR%%/crystals/elements/Kr-Krypton.cif
-%%DATADIR%%/crystals/elements/La-Lanthanum.cif
-%%DATADIR%%/crystals/elements/Li-Lithium.cif
-%%DATADIR%%/crystals/elements/Lu-Lutetium.cif
-%%DATADIR%%/crystals/elements/Mg-Magnesium.cif
-%%DATADIR%%/crystals/elements/Mn-Manganese-alpha.cif
-%%DATADIR%%/crystals/elements/Mn-Manganese-delta.cif
-%%DATADIR%%/crystals/elements/Mn-Manganese-gamma.cif
-%%DATADIR%%/crystals/elements/Mo-Molybdenum.cif
-%%DATADIR%%/crystals/elements/N-Nitrogen.cif
-%%DATADIR%%/crystals/elements/Na-Sodium.cif
-%%DATADIR%%/crystals/elements/Nb-Niobium.cif
-%%DATADIR%%/crystals/elements/Nd-Neodymium.cif
-%%DATADIR%%/crystals/elements/Ne-Neon.cif
-%%DATADIR%%/crystals/elements/Ni-Nickel.cif
-%%DATADIR%%/crystals/elements/Np-Neptunium-alpha.cif
-%%DATADIR%%/crystals/elements/Np-Neptunium-beta.cif
-%%DATADIR%%/crystals/elements/Np-Neptunium-gamma.cif
-%%DATADIR%%/crystals/elements/Os-Osmium.cif
-%%DATADIR%%/crystals/elements/P-Phosphorus-black.cif
-%%DATADIR%%/crystals/elements/P-Phosphorus.cif
-%%DATADIR%%/crystals/elements/Pb-Lead.cif
-%%DATADIR%%/crystals/elements/Pd-Palladium.cif
-%%DATADIR%%/crystals/elements/Pr-Praseodymium.cif
-%%DATADIR%%/crystals/elements/Pt-Platinum.cif
-%%DATADIR%%/crystals/elements/Pu-Plutonium-alpha.cif
-%%DATADIR%%/crystals/elements/Pu-Plutonium-epsilon.cif
-%%DATADIR%%/crystals/elements/Pu-Plutonium-gamma.cif
-%%DATADIR%%/crystals/elements/Rb-Rubidium.cif
-%%DATADIR%%/crystals/elements/Re-Rhenium.cif
-%%DATADIR%%/crystals/elements/Rh-Rhodium.cif
-%%DATADIR%%/crystals/elements/Ru-Ruthenium.cif
-%%DATADIR%%/crystals/elements/S6-Sulfur.cif
-%%DATADIR%%/crystals/elements/S8-Sulfur-alpha.cif
-%%DATADIR%%/crystals/elements/S8-Sulfur-beta.cif
-%%DATADIR%%/crystals/elements/S8-Sulfur-gamma.cif
-%%DATADIR%%/crystals/elements/Sb-Antimony.cif
-%%DATADIR%%/crystals/elements/Sc-Scandium.cif
-%%DATADIR%%/crystals/elements/Se-Selenium.cif
-%%DATADIR%%/crystals/elements/Si-Silicon.cif
-%%DATADIR%%/crystals/elements/Sm-Samarium.cif
-%%DATADIR%%/crystals/elements/Sn-Tin-alpha.cif
-%%DATADIR%%/crystals/elements/Sn-Tin-beta.cif
-%%DATADIR%%/crystals/elements/Sr-Strontium.cif
-%%DATADIR%%/crystals/elements/Ta-Tantalum.cif
-%%DATADIR%%/crystals/elements/Tb-Terbium.cif
-%%DATADIR%%/crystals/elements/Te-Tellurium.cif
-%%DATADIR%%/crystals/elements/Th-Thorium.cif
-%%DATADIR%%/crystals/elements/Ti-Titanium-alpha.cif
-%%DATADIR%%/crystals/elements/Ti-Titanium-beta.cif
-%%DATADIR%%/crystals/elements/Tl-Thallium.cif
-%%DATADIR%%/crystals/elements/Tm-Thulium.cif
-%%DATADIR%%/crystals/elements/U-Uranium-alpha.cif
-%%DATADIR%%/crystals/elements/U-Uranium-gamma.cif
-%%DATADIR%%/crystals/elements/V-Vanadium.cif
-%%DATADIR%%/crystals/elements/W-Tungsten.cif
-%%DATADIR%%/crystals/elements/Xe-Xenon.cif
-%%DATADIR%%/crystals/elements/Y-Yttrium.cif
-%%DATADIR%%/crystals/elements/Yb-Ytterbium.cif
-%%DATADIR%%/crystals/elements/Zn-Zinc.cif
-%%DATADIR%%/crystals/elements/Zr-Zirconium.cif
-%%DATADIR%%/crystals/halides/AgBr-Bromargyrite.cif
-%%DATADIR%%/crystals/halides/AgCl-Chlorargyrite.cif
-%%DATADIR%%/crystals/halides/AlCl3.cif
-%%DATADIR%%/crystals/halides/AlNa3F6-Cryolite.cif
-%%DATADIR%%/crystals/halides/CaF2-Fluorite.cif
-%%DATADIR%%/crystals/halides/CdCl2.cif
-%%DATADIR%%/crystals/halides/CdI2.cif
-%%DATADIR%%/crystals/halides/CrCl2.cif
-%%DATADIR%%/crystals/halides/CrCl3.cif
-%%DATADIR%%/crystals/halides/CsCl.cif
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-%%DATADIR%%/crystals/halides/HgCl-Calomel.cif
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-%%DATADIR%%/crystals/halides/KCl-Sylvite.cif
-%%DATADIR%%/crystals/halides/NaCl-Halite.cif
-%%DATADIR%%/crystals/halides/PbFCl-Matlockite.cif
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-%%DATADIR%%/crystals/hydrides/LiH.cif
-%%DATADIR%%/crystals/hydrides/NaH.cif
-%%DATADIR%%/crystals/hydrides/PdH.cif
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-%%DATADIR%%/crystals/hydroxides/KOH.cif
-%%DATADIR%%/crystals/hydroxides/LiOH.cif
-%%DATADIR%%/crystals/hydroxides/Mg(OH)2-Brucite.cif
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-%%DATADIR%%/crystals/ice/H2O-Ice-II.cif
-%%DATADIR%%/crystals/ice/H2O-Ice-III.cif
-%%DATADIR%%/crystals/ice/H2O-Ice-IV.cif
-%%DATADIR%%/crystals/ice/H2O-Ice-Ih.cif
-%%DATADIR%%/crystals/ice/H2O-Ice-VI.cif
-%%DATADIR%%/crystals/ice/H2O-Ice-VII.cif
-%%DATADIR%%/crystals/ice/H2O-Ice.cif
-%%DATADIR%%/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif
-%%DATADIR%%/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif
-%%DATADIR%%/crystals/intermetallics/Au3Cu-Bogdanovite.cif
-%%DATADIR%%/crystals/intermetallics/AuCu-Tetraauricupride.cif
-%%DATADIR%%/crystals/intermetallics/BiPd-Sobolevskite.cif
-%%DATADIR%%/crystals/intermetallics/CoFe-Wairauite.cif
-%%DATADIR%%/crystals/intermetallics/Cu2MnAl-Heusler.cif
-%%DATADIR%%/crystals/intermetallics/FePt-Tetraferroplatinum.cif
-%%DATADIR%%/crystals/intermetallics/PtBi.cif
-%%DATADIR%%/crystals/nitrides/AlN.cif
-%%DATADIR%%/crystals/nitrides/BN.cif
-%%DATADIR%%/crystals/nitrides/GaN.cif
-%%DATADIR%%/crystals/nitrides/InN.cif
-%%DATADIR%%/crystals/nitrides/Si3N4-beta.cif
-%%DATADIR%%/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif
-%%DATADIR%%/crystals/other/C10H10Fe-Ferrocene.cif
-%%DATADIR%%/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif
-%%DATADIR%%/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif
-%%DATADIR%%/crystals/other/FeMnO3-Bixbyite.cif
-%%DATADIR%%/crystals/other/H3N-Ammonia.cif
-%%DATADIR%%/crystals/other/LaAlO3.cif
-%%DATADIR%%/crystals/other/LiNbO3-LithiumNiobate.cif
-%%DATADIR%%/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif
-%%DATADIR%%/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif
-%%DATADIR%%/crystals/other/YBa2Cu3O6.9-YBCO.cif
-%%DATADIR%%/crystals/oxides/(MgAl2)O4-Spinel.cif
-%%DATADIR%%/crystals/oxides/Ag2O.cif
-%%DATADIR%%/crystals/oxides/AgO.cif
-%%DATADIR%%/crystals/oxides/Al2O3-Corundum.cif
-%%DATADIR%%/crystals/oxides/BaO.cif
-%%DATADIR%%/crystals/oxides/CaO-Lime.cif
-%%DATADIR%%/crystals/oxides/CdO-Monteponite.cif
-%%DATADIR%%/crystals/oxides/CeO2-Cerianite.cif
-%%DATADIR%%/crystals/oxides/CoFe2O4.cif
-%%DATADIR%%/crystals/oxides/CoO.cif
-%%DATADIR%%/crystals/oxides/Cr2O3-Eskolaite.cif
-%%DATADIR%%/crystals/oxides/Cu2O-Cuprite.cif
-%%DATADIR%%/crystals/oxides/CuO-Tenorite.cif
-%%DATADIR%%/crystals/oxides/Fe2O3-Hematite.cif
-%%DATADIR%%/crystals/oxides/Fe3O4-Magnetite.cif
-%%DATADIR%%/crystals/oxides/FeO-Wustite.cif
-%%DATADIR%%/crystals/oxides/GeO2-Argutite-tetrag.cif
-%%DATADIR%%/crystals/oxides/GeO2-Argutite.cif
-%%DATADIR%%/crystals/oxides/GeO2.cif
-%%DATADIR%%/crystals/oxides/HfO2.cif
-%%DATADIR%%/crystals/oxides/In2O3-IndiumOxide.cif
-%%DATADIR%%/crystals/oxides/In2O3.cif
-%%DATADIR%%/crystals/oxides/IrO2.cif
-%%DATADIR%%/crystals/oxides/K2O.cif
-%%DATADIR%%/crystals/oxides/La2O3-LanthanumOxide-A.cif
-%%DATADIR%%/crystals/oxides/Li2O.cif
-%%DATADIR%%/crystals/oxides/MgO-Periclase.cif
-%%DATADIR%%/crystals/oxides/MnO-Manganosite.cif
-%%DATADIR%%/crystals/oxides/MnO2-Pyrolusite.cif
-%%DATADIR%%/crystals/oxides/MoO2-Tugarinovite.cif
-%%DATADIR%%/crystals/oxides/MoO3-Molybdite.cif
-%%DATADIR%%/crystals/oxides/Na2O.cif
-%%DATADIR%%/crystals/oxides/NbO.cif
-%%DATADIR%%/crystals/oxides/NbO2.cif
-%%DATADIR%%/crystals/oxides/NiFe2O4.cif
-%%DATADIR%%/crystals/oxides/NiO-Bunsenite.cif
-%%DATADIR%%/crystals/oxides/PbO.cif
-%%DATADIR%%/crystals/oxides/PbO2-Scrutinyite.cif
-%%DATADIR%%/crystals/oxides/PdO.cif
-%%DATADIR%%/crystals/oxides/PtO2-beta.cif
-%%DATADIR%%/crystals/oxides/Rb2O.cif
-%%DATADIR%%/crystals/oxides/Rh2O3.cif
-%%DATADIR%%/crystals/oxides/RuO2.cif
-%%DATADIR%%/crystals/oxides/Sc2O3.cif
-%%DATADIR%%/crystals/oxides/SiO2-Coesite.cif
-%%DATADIR%%/crystals/oxides/SiO2-Cristobalite.cif
-%%DATADIR%%/crystals/oxides/SiO2-Quartz-alpha.cif
-%%DATADIR%%/crystals/oxides/SiO2-Quartz-beta.cif
-%%DATADIR%%/crystals/oxides/SiO2-Stishovite.cif
-%%DATADIR%%/crystals/oxides/SmO.cif
-%%DATADIR%%/crystals/oxides/SnO.cif
-%%DATADIR%%/crystals/oxides/SnO2-Cassiterite.cif
-%%DATADIR%%/crystals/oxides/SrO.cif
-%%DATADIR%%/crystals/oxides/TaO.cif
-%%DATADIR%%/crystals/oxides/TiO2-Anatase.cif
-%%DATADIR%%/crystals/oxides/TiO2-Brookite.cif
-%%DATADIR%%/crystals/oxides/TiO2-Rutile.cif
-%%DATADIR%%/crystals/oxides/UO.cif
-%%DATADIR%%/crystals/oxides/UO2-Uraninite.cif
-%%DATADIR%%/crystals/oxides/V2O3-Karelianite.cif
-%%DATADIR%%/crystals/oxides/V2O5-Shcherbinaite.cif
-%%DATADIR%%/crystals/oxides/VO.cif
-%%DATADIR%%/crystals/oxides/VO2.cif
-%%DATADIR%%/crystals/oxides/WO2.cif
-%%DATADIR%%/crystals/oxides/Y2O3.cif
-%%DATADIR%%/crystals/oxides/YbO.cif
-%%DATADIR%%/crystals/oxides/ZnO-Zincite.cif
-%%DATADIR%%/crystals/oxides/ZrO.cif
-%%DATADIR%%/crystals/oxides/ZrO2-Cubic.cif
-%%DATADIR%%/crystals/phosphides/AlP.cif
-%%DATADIR%%/crystals/phosphides/BP.cif
-%%DATADIR%%/crystals/phosphides/GaP.cif
-%%DATADIR%%/crystals/phosphides/InP.cif
-%%DATADIR%%/crystals/selenides/Bi2Se3.cif
-%%DATADIR%%/crystals/selenides/BiSe.cif
-%%DATADIR%%/crystals/selenides/CdSe-Cadmoselite.cif
-%%DATADIR%%/crystals/selenides/HgSe-Tiemannite.cif
-%%DATADIR%%/crystals/selenides/PbSe-Clausthalite.cif
-%%DATADIR%%/crystals/selenides/Sb2Se3-Antimonselite.cif
-%%DATADIR%%/crystals/selenides/ZnSe.cif
-%%DATADIR%%/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif
-%%DATADIR%%/crystals/sulfates/BaSO4-Barite.cif
-%%DATADIR%%/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif
-%%DATADIR%%/crystals/sulfates/CaSO4-Anhydrite.cif
-%%DATADIR%%/crystals/sulfates/CoSO4.cif
-%%DATADIR%%/crystals/sulfates/CuSO4.cif
-%%DATADIR%%/crystals/sulfates/MgSO4.cif
-%%DATADIR%%/crystals/sulfates/PbSO4-Anglesite.cif
-%%DATADIR%%/crystals/sulfates/SrSO4-Celestine.cif
-%%DATADIR%%/crystals/sulfides/Bi2S3-Bismuthinite.cif
-%%DATADIR%%/crystals/sulfides/CdS-Greenockite.cif
-%%DATADIR%%/crystals/sulfides/CdS-Hawleyite.cif
-%%DATADIR%%/crystals/sulfides/FeS.cif
-%%DATADIR%%/crystals/sulfides/FeS2-Pyrite.cif
-%%DATADIR%%/crystals/sulfides/HgS-Metacinnabar.cif
-%%DATADIR%%/crystals/sulfides/PbS-Galena.cif
-%%DATADIR%%/crystals/sulfides/Sb2S3-Stibnite.cif
-%%DATADIR%%/crystals/sulfides/SnS-Herzenbergite.cif
-%%DATADIR%%/crystals/sulfides/ZnS-Sphalerite.cif
-%%DATADIR%%/crystals/sulfides/ZnS-Wurtzite-2H.cif
-%%DATADIR%%/crystals/sulfides/ZnS-Zincblende.cif
-%%DATADIR%%/crystals/telurides/Bi2Te3.cif
-%%DATADIR%%/crystals/telurides/BiTe.cif
-%%DATADIR%%/crystals/telurides/CdTe.cif
-%%DATADIR%%/crystals/telurides/PbTe-Altaite.cif
-%%DATADIR%%/crystals/telurides/ZnTe.cif
-%%DATADIR%%/crystals/titanates/BaTiO3.cif
-%%DATADIR%%/crystals/titanates/CaTiO3-Perovskite.cif
-%%DATADIR%%/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif
-%%DATADIR%%/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif
-%%DATADIR%%/crystals/titanates/MgTiO3.cif
-%%DATADIR%%/crystals/titanates/SrTiO3-Tausonite.cif
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-%%DATADIR%%/crystals/zeolites/AEL.cif
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-%%DATADIR%%/crystals/zeolites/AFO.cif
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-%%DATADIR%%/fragments/alkanes/methane.cml
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-%%DATADIR%%/fragments/alkanes/tetradecane.cml
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-%%DATADIR%%/fragments/heteroaromatics/picolinic_acid.cml
-%%DATADIR%%/fragments/heteroaromatics/pyridine.cml
-%%DATADIR%%/fragments/heteroaromatics/thiophene.cml
-%%DATADIR%%/fragments/ketones/acetone.cml
-%%DATADIR%%/fragments/ketones/butanone.cml
-%%DATADIR%%/fragments/ketones/cyclohexanone.cml
-%%DATADIR%%/fragments/ketones/methyl_vinyl_ketone.cml
-%%DATADIR%%/fragments/ketones/p-benzoquinone.cml
-%%DATADIR%%/fragments/ligands/Cp-cyclopentadienyl.cml
-%%DATADIR%%/fragments/macrocycles/phthalocyanine.cml
-%%DATADIR%%/fragments/macrocycles/porphin.cml
-%%DATADIR%%/fragments/nitriles/1_1_1-trichloroacetonitrile.cml
-%%DATADIR%%/fragments/nitriles/acetonitrile.cml
-%%DATADIR%%/fragments/nitriles/butyronitrile.cml
-%%DATADIR%%/fragments/nitriles/isobutyronitrile.cml
-%%DATADIR%%/fragments/nitriles/propionitrile.cml
-%%DATADIR%%/fragments/nucleobases/adenine.cml
-%%DATADIR%%/fragments/nucleobases/cytosine.cml
-%%DATADIR%%/fragments/nucleobases/guanine.cml
-%%DATADIR%%/fragments/nucleobases/thymine.cml
-%%DATADIR%%/fragments/nucleobases/uracil.cml
-%%DATADIR%%/fragments/steroids/cholesterol.cml
-%%DATADIR%%/fragments/steroids/estradiol.cml
-%%DATADIR%%/fragments/steroids/testosterone.cml
-%%DATADIR%%/fragments/sulfoxides/dimethyl_sulfoxide.cml
-%%DATADIR%%/fragments/thiols/2-methylproprane-2-thiol.cml
-%%DATADIR%%/fragments/thiols/R_butane-2-thiol.cml
-%%DATADIR%%/fragments/thiols/butane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/ethane-1_2-dithiol.cml
-%%DATADIR%%/fragments/thiols/ethanethiol.cml
-%%DATADIR%%/fragments/thiols/heptane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/hexane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/methanethiol.cml
-%%DATADIR%%/fragments/thiols/octane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/pentane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/proprane-1-thiol.cml
-%%DATADIR%%/fragments/thiols/proprane-2-thiol.cml
-%%DATADIR%%/fragments/water.cml
-%%DATADIR%%/i18n/avogadro_af.qm
-%%DATADIR%%/i18n/avogadro_ar.qm
-%%DATADIR%%/i18n/avogadro_bg.qm
-%%DATADIR%%/i18n/avogadro_ca.qm
-%%DATADIR%%/i18n/avogadro_ca@valencia.qm
-%%DATADIR%%/i18n/avogadro_cs.qm
-%%DATADIR%%/i18n/avogadro_da.qm
-%%DATADIR%%/i18n/avogadro_de.qm
-%%DATADIR%%/i18n/avogadro_el.qm
-%%DATADIR%%/i18n/avogadro_en_AU.qm
-%%DATADIR%%/i18n/avogadro_en_CA.qm
-%%DATADIR%%/i18n/avogadro_en_GB.qm
-%%DATADIR%%/i18n/avogadro_es.qm
-%%DATADIR%%/i18n/avogadro_et.qm
-%%DATADIR%%/i18n/avogadro_eu.qm
-%%DATADIR%%/i18n/avogadro_fi.qm
-%%DATADIR%%/i18n/avogadro_fr.qm
-%%DATADIR%%/i18n/avogadro_fr_CA.qm
-%%DATADIR%%/i18n/avogadro_gl.qm
-%%DATADIR%%/i18n/avogadro_he.qm
-%%DATADIR%%/i18n/avogadro_hi.qm
-%%DATADIR%%/i18n/avogadro_hr.qm
-%%DATADIR%%/i18n/avogadro_hu.qm
-%%DATADIR%%/i18n/avogadro_id.qm
-%%DATADIR%%/i18n/avogadro_it.qm
-%%DATADIR%%/i18n/avogadro_ja.qm
-%%DATADIR%%/i18n/avogadro_kn.qm
-%%DATADIR%%/i18n/avogadro_ko.qm
-%%DATADIR%%/i18n/avogadro_ms.qm
-%%DATADIR%%/i18n/avogadro_nb.qm
-%%DATADIR%%/i18n/avogadro_nl.qm
-%%DATADIR%%/i18n/avogadro_oc.qm
-%%DATADIR%%/i18n/avogadro_pl.qm
-%%DATADIR%%/i18n/avogadro_pt.qm
-%%DATADIR%%/i18n/avogadro_pt_BR.qm
-%%DATADIR%%/i18n/avogadro_ru.qm
-%%DATADIR%%/i18n/avogadro_sk.qm
-%%DATADIR%%/i18n/avogadro_sl.qm
-%%DATADIR%%/i18n/avogadro_sq.qm
-%%DATADIR%%/i18n/avogadro_sr.qm
-%%DATADIR%%/i18n/avogadro_sv.qm
-%%DATADIR%%/i18n/avogadro_ta.qm
-%%DATADIR%%/i18n/avogadro_te.qm
-%%DATADIR%%/i18n/avogadro_th.qm
-%%DATADIR%%/i18n/avogadro_tr.qm
-%%DATADIR%%/i18n/avogadro_ug.qm
-%%DATADIR%%/i18n/avogadro_uk.qm
-%%DATADIR%%/i18n/avogadro_vi.qm
-%%DATADIR%%/i18n/avogadro_zh_CN.qm
-%%DATADIR%%/i18n/avogadro_zh_TW.qm
-%%DATADIR%%/i18n/libavogadro_ar.qm
-%%DATADIR%%/i18n/libavogadro_bg.qm
-%%DATADIR%%/i18n/libavogadro_bs.qm
-%%DATADIR%%/i18n/libavogadro_ca.qm
-%%DATADIR%%/i18n/libavogadro_ca@valencia.qm
-%%DATADIR%%/i18n/libavogadro_cs.qm
-%%DATADIR%%/i18n/libavogadro_da.qm
-%%DATADIR%%/i18n/libavogadro_de.qm
-%%DATADIR%%/i18n/libavogadro_el.qm
-%%DATADIR%%/i18n/libavogadro_en_AU.qm
-%%DATADIR%%/i18n/libavogadro_en_CA.qm
-%%DATADIR%%/i18n/libavogadro_en_GB.qm
-%%DATADIR%%/i18n/libavogadro_es.qm
-%%DATADIR%%/i18n/libavogadro_et.qm
-%%DATADIR%%/i18n/libavogadro_eu.qm
-%%DATADIR%%/i18n/libavogadro_fi.qm
-%%DATADIR%%/i18n/libavogadro_fr.qm
-%%DATADIR%%/i18n/libavogadro_gl.qm
-%%DATADIR%%/i18n/libavogadro_he.qm
-%%DATADIR%%/i18n/libavogadro_hi.qm
-%%DATADIR%%/i18n/libavogadro_hu.qm
-%%DATADIR%%/i18n/libavogadro_id.qm
-%%DATADIR%%/i18n/libavogadro_it.qm
-%%DATADIR%%/i18n/libavogadro_ja.qm
-%%DATADIR%%/i18n/libavogadro_kn.qm
-%%DATADIR%%/i18n/libavogadro_ko.qm
-%%DATADIR%%/i18n/libavogadro_ms.qm
-%%DATADIR%%/i18n/libavogadro_nb.qm
-%%DATADIR%%/i18n/libavogadro_nl.qm
-%%DATADIR%%/i18n/libavogadro_oc.qm
-%%DATADIR%%/i18n/libavogadro_pl.qm
-%%DATADIR%%/i18n/libavogadro_pt.qm
-%%DATADIR%%/i18n/libavogadro_pt_BR.qm
-%%DATADIR%%/i18n/libavogadro_ru.qm
-%%DATADIR%%/i18n/libavogadro_sk.qm
-%%DATADIR%%/i18n/libavogadro_sl.qm
-%%DATADIR%%/i18n/libavogadro_sq.qm
-%%DATADIR%%/i18n/libavogadro_sr.qm
-%%DATADIR%%/i18n/libavogadro_sv.qm
-%%DATADIR%%/i18n/libavogadro_th.qm
-%%DATADIR%%/i18n/libavogadro_tr.qm
-%%DATADIR%%/i18n/libavogadro_ug.qm
-%%DATADIR%%/i18n/libavogadro_uk.qm
-%%DATADIR%%/i18n/libavogadro_vi.qm
-%%DATADIR%%/i18n/libavogadro_zh_CN.qm
-%%DATADIR%%/i18n/libavogadro_zh_TW.qm
-%%PYTHON%%share/libavogadro/engineScripts/wireframe.py
-%%PYTHON%%share/libavogadro/extensionScripts/example.py
-share/pixmaps/avogadro-icon.png
-share/qt4/mkspecs/features/avogadro.prf
diff --git a/science/openstructure/Makefile b/science/openstructure/Makefile
deleted file mode 100644
index a2e49575d88c..000000000000
--- a/science/openstructure/Makefile
+++ /dev/null
@@ -1,45 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	openstructure
-DISTVERSION=	1.7.1
-PORTREVISION=	10
-CATEGORIES=	science
-MASTER_SITES=	https://git.scicore.unibas.ch/schwede/${PORTNAME}/repository/${DISTVERSION}/archive.tar.gz?dummy=/
-
-MAINTAINER=	yuri@FreeBSD.org
-COMMENT=	Molecular modelling and visualization environment
-
-LICENSE=	LGPL3
-LICENSE_FILE=	${WRKSRC}/LICENSE.txt
-
-DEPRECATED=		Qt4 has been EOL since december 2015 # the upstream promised to support Qt5 in the next release
-EXPIRATION_DATE=	2019-03-15
-
-BUILD_DEPENDS=	fftw3>0:math/fftw3
-LIB_DEPENDS=	libboost_filesystem.so:devel/boost-libs \
-		libfftw3f.so:math/fftw3-float \
-		libpng16.so:graphics/png \
-		libtiff.so:graphics/tiff \
-		${PY_BOOST}
-RUN_DEPENDS=	${PYNUMPY} \
-		bash:shells/bash
-
-USES=		cmake eigen:3 gl python:2.7 pyqt:4 qt:4 shebangfix # I asked the upstream to make it python3-compatible
-SHEBANG_FILES=	scripts/dng.in scripts/ost.in scripts/ost_config.in
-USE_QT=		corelib gui network opengl xml qmake_build moc_build rcc_build uic_build
-USE_PYQT=	core gui
-USE_GL=		gl glu
-USE_LDCONFIG=	yes
-
-BINARY_ALIAS=	python=${PYTHON_CMD}
-CMAKE_ARGS=	-DPYTHON_INCLUDE_PATH=${PYTHON_INCLUDEDIR} \
-		-DPYTHON_LIBRARIES=${PYTHON_LIBDIR} \
-		-DFREEBSD_BOOST_PYTHON_COMPONENT=python${PYTHON_VER:S/.//} \
-		-DFREEBSD_PYTHON_LIBRARY=python${PYTHON_VER}
-
-USE_CXXSTD=c++98 # c++98 is needed until 1.8.0 to prevent C++ code build breakage
-
-post-extract:
-	@${MV} ${WRKSRC}-* ${WRKSRC}
-
-.include <bsd.port.mk>
diff --git a/science/openstructure/distinfo b/science/openstructure/distinfo
deleted file mode 100644
index 158018f0973f..000000000000
--- a/science/openstructure/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1531473520
-SHA256 (openstructure-1.7.1.tar.gz) = a3715a921e3f992ae66ebdc19e6bcb161292bd83ac1302174ff33dc1fc98db50
-SIZE (openstructure-1.7.1.tar.gz) = 59275493
diff --git a/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake b/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake
deleted file mode 100644
index fe47164623db..000000000000
--- a/science/openstructure/files/patch-cmake__support_CopyDependencies.cmake
+++ /dev/null
@@ -1,15 +0,0 @@
---- cmake_support/CopyDependencies.cmake.orig	2018-07-09 02:47:08 UTC
-+++ cmake_support/CopyDependencies.cmake
-@@ -996,10 +996,10 @@ function(copy_python include_path versio
-     endforeach()
-   else()
-     file(COPY ${python_root_dir}/${LIB_DIR}/python${version}/ DESTINATION ${CMAKE_INSTALL_PREFIX}/${LIB_DIR}/python${version} PATTERN "*.pyc" EXCLUDE)
--    if("${LIB_DIR}" MATCHES "lib64")
-+    if("${LIB_DIR}" MATCHES "lib")
-       # for 64 bit systems we have to copy the python dir within lib in addition as norarch site packages might get installed there
-       file(COPY ${python_root_dir}/lib/python${version}/ DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/python${version} PATTERN "*.pyc" EXCLUDE)
--    endif("${LIB_DIR}" MATCHES "lib64")
-+    endif("${LIB_DIR}" MATCHES "lib")
-   endif()
-   file(GLOB  py_config_files "${include_path}/pyconfig*.h")
-   file(COPY ${py_config_files} DESTINATION ${CMAKE_INSTALL_PREFIX}/include/python${version})
diff --git a/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake b/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake
deleted file mode 100644
index c18db5597504..000000000000
--- a/science/openstructure/files/patch-cmake__support_FindOPENSTRUCTURE.cmake
+++ /dev/null
@@ -1,18 +0,0 @@
---- cmake_support/FindOPENSTRUCTURE.cmake.orig	2018-07-09 03:09:01 UTC
-+++ cmake_support/FindOPENSTRUCTURE.cmake
-@@ -27,7 +27,7 @@ macro(find_OPENSTRUCTURE OPENSTRUCTURE_R
-       NAMES ost_${LIB}
-       HINTS "${PYTHON_ROOT}"
-       PATH ${OPENSTRUCTURE_ROOT}
--      PATH_SUFFIXES lib lib64
-+      PATH_SUFFIXES lib
-       NO_SYSTEM_ENVIRONMENT_PATH NO_DEFAULT_PATH
-     )
-     if (NOT FOUND_LIB)
-@@ -84,4 +84,4 @@ else (OPENSTRUCTURE_FOUND)
-    if (OPENSTRUCTURE_FIND_REQUIRED)
-       message(FATAL_ERROR "Could not find OpenStructure")
-    endif () 
--endif ()
-\ No newline at end of file
-+endif ()
diff --git a/science/openstructure/files/patch-cmake__support_FindPython.cmake b/science/openstructure/files/patch-cmake__support_FindPython.cmake
deleted file mode 100644
index c9f792a29fa5..000000000000
--- a/science/openstructure/files/patch-cmake__support_FindPython.cmake
+++ /dev/null
@@ -1,10 +0,0 @@
---- cmake_support/FindPython.cmake.orig	2018-07-08 23:04:29 UTC
-+++ cmake_support/FindPython.cmake
-@@ -75,7 +75,6 @@ macro(_find_python_bin PYTHON_ROOT VERSI
-       NAMES "python${_VERSION_NO_DOTS}" "python${VERSION}" python.exe
-       HINTS "${PYTHON_ROOT}"
-       PATH_SUFFIXES bin
--      NO_SYSTEM_ENVIRONMENT_PATH NO_DEFAULT_PATH
-     )
-   else()
-     find_program(PYTHON_BINARY
diff --git a/science/openstructure/files/patch-cmake__support_OST.cmake b/science/openstructure/files/patch-cmake__support_OST.cmake
deleted file mode 100644
index e88bd1c466d6..000000000000
--- a/science/openstructure/files/patch-cmake__support_OST.cmake
+++ /dev/null
@@ -1,20 +0,0 @@
---- cmake_support/OST.cmake.orig	2018-02-27 14:29:54 UTC
-+++ cmake_support/OST.cmake
-@@ -834,7 +834,7 @@ macro(setup_stage)
-     check_architecture()
-   endif()
-   set (ARCH ${CMAKE_NATIVE_ARCH})
--  if ("${ARCH}" MATCHES "64" AND NOT _UBUNTU_LAYOUT)
-+  if ("${ARCH}" MATCHES "64" AND NOT _UBUNTU_LAYOUT AND NOT ${CMAKE_SYSTEM_NAME} MATCHES "FreeBSD")
-     set(LIB_DIR lib64  )
-     set(LIB_STAGE_PATH "${STAGE_DIR}/lib64"  )
-   else()
-@@ -902,7 +902,7 @@ set(_BOOST_MIN_VERSION 1.31)
- 
- macro(setup_boost)
-   set (Boost_NO_BOOST_CMAKE TRUE)
--  find_package(Boost ${_BOOST_MIN_VERSION} COMPONENTS python REQUIRED)
-+  find_package(Boost ${_BOOST_MIN_VERSION} COMPONENTS ${FREEBSD_BOOST_PYTHON_COMPONENT} REQUIRED)
-   set(BOOST_PYTHON_LIBRARIES ${Boost_LIBRARIES})
-   set(Boost_LIBRARIES)
-   find_package(Boost ${_BOOST_MIN_VERSION}
diff --git a/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc b/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc
deleted file mode 100644
index ac497f782233..000000000000
--- a/science/openstructure/files/patch-modules_base_src_test__utils_compare__files.cc
+++ /dev/null
@@ -1,17 +0,0 @@
-Patch for the obvious bug. Reported to the upstream.
-
---- modules/base/src/test_utils/compare_files.cc.orig	2018-07-10 05:54:54 UTC
-+++ modules/base/src/test_utils/compare_files.cc
-@@ -37,8 +37,10 @@ bool compare_files(const String& test, c
-   }
-   String test_line, gold_line;
-   while (true) {
--    bool test_end=std::getline(test_stream, test_line) != 0;
--    bool gold_end=std::getline(gold_stream, gold_line) != 0;
-+    std::getline(test_stream, test_line);
-+    std::getline(gold_stream, gold_line);
-+    bool test_end=test_stream.eof();
-+    bool gold_end=gold_stream.eof();
-     if (!(test_end || gold_end)) {
-       return true;
-     }
diff --git a/science/openstructure/files/patch-modules_config_base.hh b/science/openstructure/files/patch-modules_config_base.hh
deleted file mode 100644
index 5d29060e4768..000000000000
--- a/science/openstructure/files/patch-modules_config_base.hh
+++ /dev/null
@@ -1,29 +0,0 @@
---- modules/config/base.hh.orig	2018-07-09 01:41:40 UTC
-+++ modules/config/base.hh
-@@ -56,22 +56,26 @@ typedef unsigned short Word;
- #ifndef round_function
- #define round_function
- #ifndef round
-+#if !defined(__FreeBSD__)
- inline Real round( Real d )
- {
-   return floor(d+Real(0.5));
- }
- #endif
- #endif
-+#endif
- 
- #ifndef rint_function
- #define rint_function
- #ifndef rint
-+#if !defined(__FreeBSD__)
- inline Real rint(Real d)
- {
-   return floor(d+Real(0.5));
- }
- #endif
- #endif
-+#endif
- 
- #if _MSC_VER
- #pragma warning(disable:4251)
diff --git a/science/openstructure/files/patch-modules_db_src_sqlite3.c b/science/openstructure/files/patch-modules_db_src_sqlite3.c
deleted file mode 100644
index fe5e4584cc47..000000000000
--- a/science/openstructure/files/patch-modules_db_src_sqlite3.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/db/src/sqlite3.c.orig	2018-07-09 00:05:56 UTC
-+++ modules/db/src/sqlite3.c
-@@ -15341,7 +15341,7 @@ SQLITE_PRIVATE void sqlite3MemSetDefault
- ** SQLITE_WITHOUT_ZONEMALLOC symbol is defined.
- */
- #include <sys/sysctl.h>
--#include <malloc/malloc.h>
-+#include <stdlib.h>
- #include <libkern/OSAtomic.h>
- static malloc_zone_t* _sqliteZone_;
- #define SQLITE_MALLOC(x) malloc_zone_malloc(_sqliteZone_, (x))
diff --git a/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh b/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh
deleted file mode 100644
index a9594f64ea1f..000000000000
--- a/science/openstructure/files/patch-modules_gfx_src_offscreen__buffer.hh
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/gfx/src/offscreen_buffer.hh.orig	2018-07-09 00:19:53 UTC
-+++ modules/gfx/src/offscreen_buffer.hh
-@@ -58,7 +58,7 @@ public:
-    bool IsValid();
- */
- 
--#if defined(__linux__)
-+#if defined(__linux__) || defined(__FreeBSD__)
- #if OST_MESA_SUPPORT_ENABLED
- #include "impl/mesa_offscreen_buffer.hh"
- #else
diff --git a/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt b/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt
deleted file mode 100644
index 880c10bb0449..000000000000
--- a/science/openstructure/files/patch-modules_gui_src_CMakeLists.txt
+++ /dev/null
@@ -1,13 +0,0 @@
---- modules/gui/src/CMakeLists.txt.orig	2018-02-27 14:29:54 UTC
-+++ modules/gui/src/CMakeLists.txt
-@@ -472,8 +472,9 @@ qt4_wrap_cpp(OST_GOSTY_MOC "gosty.hh"
-              OPTIONS -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED
-                      -DBOOST_NO_TEMPLATE_PARTIAL_SPECIALIZATION)
- 
--set(LINK LINK ${BOOST_PROGRAM_OPTIONS_LIBRARIES})
-+set(LINK LINK ${BOOST_PROGRAM_OPTIONS_LIBRARIES} ${FREEBSD_PYTHON_LIBRARY})
- 
-+link_directories(${CMAKE_INSTALL_PREFIX}/lib)
- executable_libexec(NAME gosty SOURCES gosty.cc ${OST_GOSTY_MOC} ${OST_QT_RESOURCE} 
-            DEPENDS_ON ost_gui ${LINK})
-            
diff --git a/science/openstructure/files/patch-modules_gui_src_gosty.cc b/science/openstructure/files/patch-modules_gui_src_gosty.cc
deleted file mode 100644
index de8716c2c00d..000000000000
--- a/science/openstructure/files/patch-modules_gui_src_gosty.cc
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/gui/src/gosty.cc.orig	2018-07-09 03:10:04 UTC
-+++ modules/gui/src/gosty.cc
-@@ -111,7 +111,7 @@ String setup_python_search_path(const St
- #ifdef _MSC_VER
-   String loc=root+"\\lib\\"+site_pkgs.str()+"\\site-packages";
- #else  
--# if (defined(__ppc64__) || defined(__x86_64__)) && !defined(__APPLE__) && !OST_UBUNTU_LAYOUT
-+# if (defined(__ppc64__) || defined(__x86_64__)) && !defined(__APPLE__) && !OST_UBUNTU_LAYOUT && !defined(__FreeBSD__)
-   String loc=root+"/lib64/"+site_pkgs.str()+"/site-packages";
- # else
-   String loc=root+"/lib/"+site_pkgs.str()+"/site-packages";
diff --git a/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc b/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc
deleted file mode 100644
index 33fc51e38bdb..000000000000
--- a/science/openstructure/files/patch-modules_img_base_src_raster__image_raster__image.cc
+++ /dev/null
@@ -1,11 +0,0 @@
---- modules/img/base/src/raster_image/raster_image.cc.orig	2018-07-09 00:06:35 UTC
-+++ modules/img/base/src/raster_image/raster_image.cc
-@@ -25,7 +25,7 @@
- */
- 
- #ifndef __APPLE__
--#include <malloc.h>
-+#include <stdlib.h>
- #endif
- #include <cmath>
- #include <iostream>
diff --git a/science/openstructure/pkg-descr b/science/openstructure/pkg-descr
deleted file mode 100644
index 045b43d30f65..000000000000
--- a/science/openstructure/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-This project aims to provide an open-source, modular, flexible, molecular
-modelling and visualization environment.
-
-Molecular structures are a central aspect of OpenStructure and a rich
-understanding of macromolecular structure datasets with access to atoms,
-residues, chains, bonds and torsions is offered.
-
-Features:
-* Intuitive representation of structural subsets, so-called EntityViews, that
-  can be created with a dedicated query language or constructed manually for
-  more complex cases.
-* Real-time rendering of molecular structures
-* Interactive Analysis of Trajectories
-* Support for common file formats such as PDB, mmCIF, SDF, PQR
-* Read more about molecular structures in OpenStructure
-
-WWW: https://openstructure.org/
diff --git a/science/openstructure/pkg-plist b/science/openstructure/pkg-plist
deleted file mode 100644
index 927af2276c07..000000000000
--- a/science/openstructure/pkg-plist
+++ /dev/null
@@ -1,963 +0,0 @@
-bin/chemdict_tool
-bin/dng
-bin/lddt
-bin/molck
-bin/ost
-include/ost/base.hh
-include/ost/boost_filesystem_helper.hh
-include/ost/config.hh
-include/ost/conop/amino_acids.hh
-include/ost/conop/compound.hh
-include/ost/conop/compound_lib.hh
-include/ost/conop/compound_lib_base.hh
-include/ost/conop/conop.hh
-include/ost/conop/diag.hh
-include/ost/conop/heuristic.hh
-include/ost/conop/minimal_compound_lib.hh
-include/ost/conop/model_check.hh
-include/ost/conop/module_config.hh
-include/ost/conop/nonstandard.hh
-include/ost/conop/processor.hh
-include/ost/conop/ring_finder.hh
-include/ost/conop/rule_based.hh
-include/ost/db/module_config.hh
-include/ost/db/sqlite3.h
-include/ost/db/sqlite_conv.hh
-include/ost/db/sqlite_wrap.hh
-include/ost/dllexport.hh
-include/ost/dyn_cast.hh
-include/ost/export_helper/generic_property_def.hh
-include/ost/export_helper/pair_to_tuple_conv.hh
-include/ost/export_helper/vec_to_list_conv.hh
-include/ost/fixed_string.hh
-include/ost/generic_property.hh
-include/ost/geom/aligned_cuboid.hh
-include/ost/geom/circular_iterator.hh
-include/ost/geom/composite.hh
-include/ost/geom/composite2.hh
-include/ost/geom/composite2_op.hh
-include/ost/geom/composite3.hh
-include/ost/geom/composite3_op.hh
-include/ost/geom/composite_op.hh
-include/ost/geom/constants.hh
-include/ost/geom/def.hh
-include/ost/geom/exc.hh
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-include/ost/geom/mat.hh
-include/ost/geom/mat2.hh
-include/ost/geom/mat3.hh
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-include/ost/geom/module_config.hh
-include/ost/geom/point_cloud.hh
-include/ost/geom/quat.hh
-include/ost/geom/transform.hh
-include/ost/geom/vec.hh
-include/ost/geom/vec2.hh
-include/ost/geom/vec3.hh
-include/ost/geom/vec4.hh
-include/ost/geom/vec_mat_predicates.hh
-include/ost/geom/vecmat2_op.hh
-include/ost/geom/vecmat3_op.hh
-include/ost/geom/vecmat4_op.hh
-include/ost/geom/vecmat_op.hh
-include/ost/gfx/bitmap_io.hh
-include/ost/gfx/collada_exporter.hh
-include/ost/gfx/color.hh
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-include/ost/gfx/color_ops/by_chain_color_op.hh
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-include/ost/gfx/color_ops/color_op.hh
-include/ost/gfx/color_ops/entity_view_color_op.hh
-include/ost/gfx/color_ops/gradient_color_op.hh
-include/ost/gfx/color_ops/gradient_level_color_op.hh
-include/ost/gfx/color_ops/map_handle_color_op.hh
-include/ost/gfx/color_ops/uniform_color_op.hh
-include/ost/gfx/entity.hh
-include/ost/gfx/entity_fw.hh
-include/ost/gfx/exporter.hh
-include/ost/gfx/exporter_fw.hh
-include/ost/gfx/gfx.hh
-include/ost/gfx/gfx_fw.hh
-include/ost/gfx/gfx_node.hh
-include/ost/gfx/gfx_node_fw.hh
-include/ost/gfx/gfx_node_visitor.hh
-include/ost/gfx/gfx_object.hh
-include/ost/gfx/gfx_object_base.hh
-include/ost/gfx/gfx_object_fw.hh
-include/ost/gfx/gfx_prim.hh
-include/ost/gfx/gfx_test_object.hh
-include/ost/gfx/gl_helper.hh
-include/ost/gfx/gl_include.hh
-include/ost/gfx/glext_include.hh
-include/ost/gfx/glwin_base.hh
-include/ost/gfx/gost_exporter.hh
-include/ost/gfx/gradient.hh
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-include/ost/gfx/impl/backbone_trace.hh
-include/ost/gfx/impl/cartoon_renderer.hh
-include/ost/gfx/impl/connect_renderer_base.hh
-include/ost/gfx/impl/cpk_renderer.hh
-include/ost/gfx/impl/custom_renderer.hh
-include/ost/gfx/impl/debug_renderer.hh
-include/ost/gfx/impl/entity_detail.hh
-include/ost/gfx/impl/entity_renderer.hh
-include/ost/gfx/impl/entity_renderer_fw.hh
-include/ost/gfx/impl/fast_spheres.hh
-include/ost/gfx/impl/glx_offscreen_buffer.hh
-include/ost/gfx/impl/line_trace_renderer.hh
-include/ost/gfx/impl/map_iso_gen.hh
-include/ost/gfx/impl/map_iso_gen_s.hh
-include/ost/gfx/impl/map_iso_spec.hh
-include/ost/gfx/impl/map_octree.hh
-include/ost/gfx/impl/mapped_property.hh
-include/ost/gfx/impl/octree_isocont.hh
-include/ost/gfx/impl/simple_renderer.hh
-include/ost/gfx/impl/sline_renderer.hh
-include/ost/gfx/impl/tabulated_trig.hh
-include/ost/gfx/impl/trace_renderer.hh
-include/ost/gfx/impl/trace_renderer_base.hh
-include/ost/gfx/input.hh
-include/ost/gfx/map_handle_color_op.hh
-include/ost/gfx/map_iso.hh
-include/ost/gfx/map_iso_prop.hh
-include/ost/gfx/map_slab.hh
-include/ost/gfx/material.hh
-include/ost/gfx/module_config.hh
-include/ost/gfx/offscreen_buffer.hh
-include/ost/gfx/povray.hh
-include/ost/gfx/povray_fw.hh
-include/ost/gfx/prim_list.hh
-include/ost/gfx/primitives.hh
-include/ost/gfx/render_mode.hh
-include/ost/gfx/render_options/cartoon_render_options.hh
-include/ost/gfx/render_options/cpk_render_options.hh
-include/ost/gfx/render_options/custom_render_options.hh
-include/ost/gfx/render_options/line_render_options.hh
-include/ost/gfx/render_options/line_trace_render_options.hh
-include/ost/gfx/render_options/render_options.hh
-include/ost/gfx/render_options/simple_render_options.hh
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-include/ost/gfx/render_options/trace_render_options.hh
-include/ost/gfx/render_pass.hh
-include/ost/gfx/scene.hh
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-include/ost/gfx/surface.hh
-include/ost/gfx/symmetry_node.hh
-include/ost/gfx/texture.hh
-include/ost/gfx/vertex_array.hh
-include/ost/gfx/vertex_array_helper.hh
-include/ost/gui/admin.hh
-include/ost/gui/data_viewer/argand.hh
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-include/ost/gui/data_viewer/overlay_manager.hh
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-include/ost/gui/data_viewer/overlay_manager_gui.hh
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-include/ost/gui/data_viewer/pointlist_overlay.hh
-include/ost/gui/data_viewer/pointlist_overlay_base.hh
-include/ost/gui/data_viewer/strategies.hh
-include/ost/gui/data_viewer/strategies_fw.hh
-include/ost/gui/data_viewer/viewer_normalizer.hh
-include/ost/gui/dock_widget.hh
-include/ost/gui/file_browser.hh
-include/ost/gui/file_loader.hh
-include/ost/gui/file_type_dialog.hh
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-include/ost/gui/gl_canvas.hh
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-include/ost/gui/panels/panel_bar.hh
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-include/ost/gui/python_shell/transition_guard.hh
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-include/ost/gui/scene_win/root_node.hh
-include/ost/gui/scene_win/scene_node.hh
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-include/ost/gui/sequence_viewer/seq_text_painter.hh
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-include/ost/gui/tools/manipulator.hh
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-%%PYTHON_SITELIBDIR%%/ost/io/__init__.pyc
-%%PYTHON_SITELIBDIR%%/ost/io/_ost_io.so
-%%PYTHON_SITELIBDIR%%/ost/io/remote.py
-%%PYTHON_SITELIBDIR%%/ost/io/remote.pyc
-%%PYTHON_SITELIBDIR%%/ost/io/repository.py
-%%PYTHON_SITELIBDIR%%/ost/io/repository.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/__init__.py
-%%PYTHON_SITELIBDIR%%/ost/mol/__init__.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/_ost_mol.so
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/__init__.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/__init__.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/_ost_mol_alg.so
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/hbond.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/hbond.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/helix_kinks.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/helix_kinks.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/qsscoring.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/qsscoring.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/structure_analysis.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/structure_analysis.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/superpose.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/superpose.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/trajectory_analysis.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/trajectory_analysis.pyc
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/views.py
-%%PYTHON_SITELIBDIR%%/ost/mol/alg/views.pyc
-%%PYTHON_SITELIBDIR%%/ost/ost_startup.py
-%%PYTHON_SITELIBDIR%%/ost/seq/__init__.py
-%%PYTHON_SITELIBDIR%%/ost/seq/__init__.pyc
-%%PYTHON_SITELIBDIR%%/ost/seq/_ost_seq.so
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/__init__.py
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/__init__.pyc
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/_ost_seq_alg.so
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/mat.py
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/mat.pyc
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/renumber.py
-%%PYTHON_SITELIBDIR%%/ost/seq/alg/renumber.pyc
-%%PYTHON_SITELIBDIR%%/ost/settings.py
-%%PYTHON_SITELIBDIR%%/ost/settings.pyc
-%%PYTHON_SITELIBDIR%%/ost/stutil.py
-%%PYTHON_SITELIBDIR%%/ost/stutil.pyc
-%%PYTHON_SITELIBDIR%%/ost/table.py
-%%PYTHON_SITELIBDIR%%/ost/table.pyc
-%%PYTHON_SITELIBDIR%%/ost/table_selector.py
-%%PYTHON_SITELIBDIR%%/ost/table_selector.pyc
-%%PYTHON_SITELIBDIR%%/ost/testutils.py
-%%PYTHON_SITELIBDIR%%/ost/testutils.pyc
-%%PYTHON_SITELIBDIR%%/ost/xmlrunner.py
-%%PYTHON_SITELIBDIR%%/ost/xmlrunner.pyc
-libexec/openstructure/gosty
-libexec/openstructure/ost_config
-%%DATADIR%%/atom_scattering_properties.txt
-%%DATADIR%%/gui/icons/add_icon.png
-%%DATADIR%%/gui/icons/close_icon.png
-%%DATADIR%%/gui/icons/critical_icon.png
-%%DATADIR%%/gui/icons/delete_icon.png
-%%DATADIR%%/gui/icons/distance_icon.png
-%%DATADIR%%/gui/icons/find_icon.png
-%%DATADIR%%/gui/icons/information_icon.png
-%%DATADIR%%/gui/icons/map_icon.png
-%%DATADIR%%/gui/icons/menubar_icon.png
-%%DATADIR%%/gui/icons/refresh.png
-%%DATADIR%%/gui/icons/rigid_body_manipulator_icon.png
-%%DATADIR%%/gui/icons/selection_icon.png
-%%DATADIR%%/gui/icons/show_sidebar_icon.png
-%%DATADIR%%/gui/icons/site_icon.png
-%%DATADIR%%/gui/icons/split_icon.png
-%%DATADIR%%/gui/icons/warning_icon.png
-%%DATADIR%%/gui/images/logo-small.png
-%%DATADIR%%/scene/gradients.xml
-%%DATADIR%%/scene/icons/color_icon.png
-%%DATADIR%%/scene/icons/preset_icon.png
-%%DATADIR%%/scene/icons/render_icon.png
-%%DATADIR%%/scene/icons/tool_icon.png
-%%DATADIR%%/scene/presets.xml
-%%DATADIR%%/stereo_chemical_props.txt
-%%DATADIR%%/textures/glyph_texture.png
-%%DATADIR%%/textures/test_texture.png
diff --git a/science/py-veusz/Makefile b/science/py-veusz/Makefile
deleted file mode 100644
index a001aa5cc50f..000000000000
--- a/science/py-veusz/Makefile
+++ /dev/null
@@ -1,37 +0,0 @@
-# Created by: Stas Timokhin <devel@stasyan.com>
-# $FreeBSD$
-
-PORTNAME=	veusz
-PORTVERSION=	1.19.1
-PORTREVISION=	5
-CATEGORIES=	science kde
-MASTER_SITES=	http://download.gna.org/veusz/
-PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
-
-MAINTAINER=	devel@stasyan.com
-COMMENT=	Scientific plotting package
-
-LICENSE=	GPLv2
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-DEPRECATED=		Qt4 has been EOL since december 2015
-EXPIRATION_DATE=	2019-03-15
-
-BUILD_DEPENDS=	${RUN_DEPENDS}
-RUN_DEPENDS=	${PYNUMPY}
-
-USES=		python pyqt:4 qt:4 shebangfix
-USE_PYQT=	gui svg
-USE_PYTHON=	distutils concurrent autoplist
-USE_QT=		corelib gui xml
-SHEBANG_FILES=	examples/embedexample.py
-
-post-patch:
-	@${REINPLACE_CMD} \
-		-e 's,distutils\.command\.install ,setuptools\.command\.install ,' \
-		${WRKSRC}/setup.py
-
-post-install:
-	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/veusz/helpers/*.so
-
-.include <bsd.port.mk>
diff --git a/science/py-veusz/distinfo b/science/py-veusz/distinfo
deleted file mode 100644
index 1608e7b71293..000000000000
--- a/science/py-veusz/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (veusz-1.19.1.tar.gz) = d6e2d530a18d8c1546be112e95b0fb649a213d559ba2d467810ab6c19adb52b0
-SIZE (veusz-1.19.1.tar.gz) = 1777351
diff --git a/science/py-veusz/files/patch-veusz_helpers_src_qtloops_isnan.h b/science/py-veusz/files/patch-veusz_helpers_src_qtloops_isnan.h
deleted file mode 100644
index 94afe261cded..000000000000
--- a/science/py-veusz/files/patch-veusz_helpers_src_qtloops_isnan.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- veusz/helpers/src/qtloops/isnan.h.orig	2013-11-27 18:00:21 UTC
-+++ veusz/helpers/src/qtloops/isnan.h
-@@ -50,7 +50,7 @@
- # define isFinite(_a) (_finite(_a)) 	/* Win32 definition */
- #elif defined(__sgi)
- # define isFinite(_a) (_isfinite(_a))
--#elif defined(isfinite)
-+#elif defined(isfinite) || defined(__FreeBSD__)
- # define isFinite(_a) (isfinite(_a))
- #elif defined(__osf__)
- # define isFinite(_a) (finite(_a) && !isNaN(_a))
diff --git a/science/py-veusz/pkg-descr b/science/py-veusz/pkg-descr
deleted file mode 100644
index 0a3a8a934a5b..000000000000
--- a/science/py-veusz/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-Veusz is a GUI scientific plotting and graphing package. It
-is designed to produce publication-ready Postscript or PDF
-output. SVG, EMF and bitmap formats export are also supported.
-The program runs under Unix/Linux, Windows or Mac OS X, and
-binaries are provided. Data can be read from text, CSV or FITS
-files, and data can be manipulated or examined from within the
-application.
-
-WWW: http://home.gna.org/veusz/
diff --git a/science/qtresistors/Makefile b/science/qtresistors/Makefile
deleted file mode 100644
index 22f1bde13500..000000000000
--- a/science/qtresistors/Makefile
+++ /dev/null
@@ -1,27 +0,0 @@
-# Created by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
-# $FreeBSD$
-
-PORTNAME=	qtresistors
-PORTVERSION=	0.1
-PORTREVISION=	2
-CATEGORIES=	science
-MASTER_SITES=	http://qt-apps.org/CONTENT/content-files/
-DISTNAME=	118297-qtResistors-201001102229
-
-MAINTAINER=	kde@FreeBSD.org
-COMMENT=	Calculate resistance of resistor by the colors on the resistor
-
-DEPRECATED=		Qt4 has been EOL since december 2015
-EXPIRATION_DATE=	2019-03-15
-
-USES=		qmake qt:4
-USE_QT=		gui uic_build moc_build
-
-WRKSRC=		${WRKDIR}/qtResistors
-
-PLIST_FILES=	bin/${PORTNAME}
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/qtResistors ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
-
-.include <bsd.port.mk>
diff --git a/science/qtresistors/distinfo b/science/qtresistors/distinfo
deleted file mode 100644
index 07b7667c7589..000000000000
--- a/science/qtresistors/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (118297-qtResistors-201001102229.tar.gz) = 97f9195bebca8f697feae7517393fb4c5bce666041139b4497d4521d73a55f58
-SIZE (118297-qtResistors-201001102229.tar.gz) = 104791
diff --git a/science/qtresistors/pkg-descr b/science/qtresistors/pkg-descr
deleted file mode 100644
index 26d457b523a7..000000000000
--- a/science/qtresistors/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-qtResistors - calculate resistance of resistor by the colors on the resistor
-
-WWW: http://qt-apps.org/content/show.php/qtResistors?content=118297