science/vmd: various fixes

 - fix spelling of VMD license [1]
 - use USES=tcl,tk instead of direct dependency
 - patch vmd to support (tcl|tk)86
 - fix shebang for tcl [1]
 - fix detection of netcdf
 - add sqlite as a dependency (for dmsplugin) [1]
 - add expact as a dependency (for hoomdplugin)
 - rework configuration:
   - explicitly list required components (CONFIGURE_ARGS)
   - call configure directly (instead of via gmake(1))
   - patch configure to accept TCLLDFLAGS and TKLDFLAGS
   - pass PREFIX as an environment variable instead of using sed(1)
   - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS
 - add support for parallel building (except for building plugins)
 - bump PORTREVISION

PR:		219642
Reported by:	Yuri Victorovich <yuri@rawbw.com>

1 files changed, 13 insertions, 2 deletions

diff --git a/science/vmd/files/patch-configure b/science/vmd/files/patch-configure
index 6db1b98b3627..33ca9e23ce8f 100644
--- a/science/vmd/files/patch-configure
+++ b/science/vmd/files/patch-configure
@@ -5,14 +5,25 @@
  
  # Directory where VMD startup script is installed, should be in users' paths.
 -$install_bin_dir="/usr/local/bin";
-+$install_bin_dir="\${DESTDIR}%%PREFIX%%/bin";
++$install_bin_dir="\${DESTDIR}\${PREFIX}/bin";
  
  # Directory where VMD files and executables are installed
 -$install_library_dir="/usr/local/lib/$install_name";
-+$install_library_dir="\${DESTDIR}%%PREFIX%%/lib/$install_name";
++$install_library_dir="\${DESTDIR}\${PREFIX}/lib/$install_name";
  
  
  # optionally override hard-coded defaults above with environment variables
+@@ -729,8 +729,8 @@ $tcl_include      = "-I$stock_tcl_includ
+ if ($config_tk) { $tcl_include .= " -I$stock_tk_include_dir"; }
+ $tcl_library      = "-L$stock_tcl_library_dir";
+ if ($config_tk) { $tcl_library .= " -L$stock_tk_library_dir"; }
+-$tcl_libs         = "-ltcl8.5";  
+-if ($config_tk) { $tcl_libs = "-ltk8.5 -lX11 " . $tcl_libs; }
++$tcl_libs         = "\${TCLLDFLAGS}";
++if ($config_tk) { $tcl_libs = "\${TKLDFLAGS} " . $tcl_libs; }
+ 
+ @tcl_cc           = ();
+ @tcl_cu           = ();
 @@ -1105,8 +1105,8 @@ if ($config_liboptix) {
  # This may be commented out if not required.
  $libtachyon_defines     = "-DVMDLIBTACHYON";