diff options
| author | Thierry Thomas <thierry@FreeBSD.org> | 2022-06-16 18:10:38 +0200 |
|---|---|---|
| committer | Thierry Thomas <thierry@FreeBSD.org> | 2022-06-21 19:26:21 +0200 |
| commit | 40568cac8e3e1931ca48becdfd18e2bf0aab1061 (patch) | |
| tree | fedc168107937572eba05f3afa514c00e1df4585 /science/py-MDAnalysis/files/patch-setup.py | |
| parent | www/nginx: Update 3rd Party Modul NJS: (diff) | |
science/py-MDAnalysis*: upgrade to 2.2.0
Version 0.19.2 is too old and does not support Python-3.9.
Remark: threadpoolctl is disabled in this port. See
<https://github.com/MDAnalysis/mdanalysis/pull/2950> for the impacts on
performance.
Releases notes at <https://github.com/MDAnalysis/mdanalysis/releases>.
PR: 264716
Approved by: yuri (maintainer)
Diffstat (limited to 'science/py-MDAnalysis/files/patch-setup.py')
| -rw-r--r-- | science/py-MDAnalysis/files/patch-setup.py | 20 |
1 files changed, 14 insertions, 6 deletions
diff --git a/science/py-MDAnalysis/files/patch-setup.py b/science/py-MDAnalysis/files/patch-setup.py index baad2ab31e0e..21db43b92b78 100644 --- a/science/py-MDAnalysis/files/patch-setup.py +++ b/science/py-MDAnalysis/files/patch-setup.py @@ -1,11 +1,19 @@ ---- setup.py.orig 2018-05-13 20:38:06 UTC +--- setup.py.orig 2022-06-02 18:49:09 UTC +++ setup.py -@@ -253,7 +253,7 @@ def extensions(config): - use_cython = config.get('use_cython', default=not is_release) +@@ -274,7 +274,7 @@ def extensions(config): + use_cython = config.get('use_cython', default=cython_found) use_openmp = config.get('use_openmp', default=True) -- extra_compile_args = ['-std=c99', '-ffast-math', '-O3', '-funroll-loops'] -+ extra_compile_args = ['-std=c99', '-ffast-math', '-funroll-loops'] +- extra_compile_args = ['-std=c99', '-ffast-math', '-O3', '-funroll-loops', ++ extra_compile_args = ['-std=c99', '-ffast-math', '-funroll-loops', + '-fsigned-zeros'] # see #2722 define_macros = [] if config.get('debug_cflags', default=False): - extra_compile_args.extend(['-Wall', '-pedantic']) +@@ -599,7 +599,6 @@ if __name__ == '__main__': + 'scipy>=1.5.0', + 'matplotlib>=1.5.1', + 'tqdm>=4.43.0', +- 'threadpoolctl', + 'packaging', + 'fasteners', + 'gsd>=1.9.3', |