Resurrect graphics/py-pyembree and math/py-yt now that graphics/embree is fixed.

PR:		240117 (related)
Submitted by:	FreeBSD@ShaneWare.Biz

5 files changed, 71 insertions, 0 deletions

diff --git a/math/py-yt/Makefile b/math/py-yt/Makefile
new file mode 100644
index 000000000000..a8307fed88b1
--- /dev/null
+++ b/math/py-yt/Makefile
@@ -0,0 +1,39 @@
+# Created by: Yuri Victorovich <yuri@rawbw.com>
+# $FreeBSD$
+
+PORTNAME=	yt
+DISTVERSION=	3.5.0
+PORTREVISION=	3
+CATEGORIES=	math astro python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Analysis and visualization toolkit for volumetric data
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/COPYING.txt
+
+BUILD_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}pyembree>0:graphics/py-pyembree@${PY_FLAVOR}
+LIB_DEPENDS=	libembree.so:graphics/embree \
+		libomp.so:devel/openmp
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}sympy>=1.0:math/py-sympy@${PY_FLAVOR} \
+		${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}pyembree>0:graphics/py-pyembree@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.3:math/py-matplotlib@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}ipython5>=1.0:devel/ipython5@${PY_FLAVOR}
+
+USES=		dos2unix localbase python
+USE_PYTHON=	distutils cython autoplist concurrent
+
+post-patch:
+	@${REINPLACE_CMD} -e "s|check_for_pyembree() is not None|True|; s|check_for_openmp() is True|True|" \
+		${WRKSRC}/setup.py
+	@${REINPLACE_CMD} -e "s|\['-fopenmp', filename\]|['-I${LOCALBASE}/include', '-L${LOCALBASE}/lib', '-lm', '-fopenmp', filename]|" \
+		${WRKSRC}/setupext.py
+
+post-install:
+	@${STRIP_CMD} $$(${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name "*.so")
+
+.include <bsd.port.mk>
diff --git a/math/py-yt/distinfo b/math/py-yt/distinfo
new file mode 100644
index 000000000000..e3cfab5cd2e8
--- /dev/null
+++ b/math/py-yt/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1539846194
+SHA256 (yt-3.5.0.tar.gz) = ee4bf8349f02ce21f571654c26d85c1f69d9678fc8f5c7cfe5d1686c7ed2e3ca
+SIZE (yt-3.5.0.tar.gz) = 10417638
diff --git a/math/py-yt/files/patch-yt_extern_tqdm___utils.py b/math/py-yt/files/patch-yt_extern_tqdm___utils.py
new file mode 100644
index 000000000000..42900ea89072
--- /dev/null
+++ b/math/py-yt/files/patch-yt_extern_tqdm___utils.py
@@ -0,0 +1,11 @@
+--- yt/extern/tqdm/_utils.py.orig	2017-01-01 20:57:19 UTC
++++ yt/extern/tqdm/_utils.py
+@@ -40,7 +40,7 @@ def _environ_cols_wrapper():  # pragma: 
+         _environ_cols = _environ_cols_windows
+         if _environ_cols is None:
+             _environ_cols = _environ_cols_tput
+-    if current_os in ['Linux', 'Darwin'] or current_os.startswith('CYGWIN'):
++    if current_os in ['FreeBSD', 'Linux', 'Darwin'] or current_os.startswith('CYGWIN'):
+         _environ_cols = _environ_cols_linux
+     return _environ_cols
+ 
diff --git a/math/py-yt/files/patch-yt_utilities_lib_platform__dep.h b/math/py-yt/files/patch-yt_utilities_lib_platform__dep.h
new file mode 100644
index 000000000000..4bf2fcc821d3
--- /dev/null
+++ b/math/py-yt/files/patch-yt_utilities_lib_platform__dep.h
@@ -0,0 +1,11 @@
+--- yt/utilities/lib/platform_dep.h.orig	2017-01-01 20:57:35 UTC
++++ yt/utilities/lib/platform_dep.h
+@@ -57,7 +57,7 @@ double erf(double x)
+ 
+ #else
+ #include <stdint.h>
+-#include "alloca.h"
++#include <stdlib.h>
+ #include <math.h>
+ #endif
+ 
diff --git a/math/py-yt/pkg-descr b/math/py-yt/pkg-descr
new file mode 100644
index 000000000000..164d85c3123e
--- /dev/null
+++ b/math/py-yt/pkg-descr
@@ -0,0 +1,7 @@
+yt supports structured, variable-resolution meshes, unstructured meshes,
+and discrete or sampled data such as particles. Focused on driving
+physically-meaningful inquiry, yt has been applied in domains such as
+astrophysics, seismology, nuclear engineering, molecular dynamics, and
+oceanography.
+
+WWW: http://yt-project.org