summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorGerald Pfeifer <gerald@FreeBSD.org>2016-12-07 13:24:56 +0000
committerGerald Pfeifer <gerald@FreeBSD.org>2016-12-07 13:24:56 +0000
commite4b7b9118a07c1abfba624cb75f204c62030aa79 (patch)
tree6d5d55da551a842aeccb81af2fbec5d4427e876a /biology
parentnet-im/openfire: update to 4.0.4, kill Linux-based nativeAuth plugin (diff)
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II. The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. This adds ports with USES=fortran and ports using Mk/bsd.octave.mk which in turn has USES=fortran. PR: 214965 Reported by: thierry
Notes
Notes: svn path=/head/; revision=428057
Diffstat (limited to 'biology')
-rw-r--r--biology/crux/Makefile2
-rw-r--r--biology/molden/Makefile2
-rw-r--r--biology/mopac/Makefile1
-rw-r--r--biology/plink/Makefile2
-rw-r--r--biology/psi88/Makefile2
-rw-r--r--biology/t_coffee/Makefile2
-rw-r--r--biology/tinker/Makefile1
7 files changed, 7 insertions, 5 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 6f6ee97b8db1..6131e4c47f47 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
PORTNAME= crux
PORTVERSION= 1.2.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology python
MASTER_SITES= http://www.canonware.com/download/Crux/
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 4a11759a0cad..467ae8786fd5 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
PORTNAME= molden
PORTVERSION= 5.7
-PORTREVISION= 3
+PORTREVISION= 4
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index faab25b16421..67a6592572db 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,6 +3,7 @@
PORTNAME= mopac
PORTVERSION= 7.${MOPAC_SUBVERSION}
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index 3e6be38a458c..f0c613503a79 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -3,7 +3,7 @@
PORTNAME= plink
PORTVERSION= 1.07
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index fa55cef40c6d..7cd6f37adfa7 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi88
PORTVERSION= 1.0
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
DISTNAME= ${PORTNAME}
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index c79244ebfe64..8c02abaad776 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
PORTNAME= t_coffee
PORTVERSION= 9.03
DISTVERSIONSUFFIX= .r1318
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 8ae6a4795b9e..bceb67391585 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,6 +3,7 @@
PORTNAME= tinker
PORTVERSION= 7.1.3
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/