diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-12 18:21:41 -0500 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-04-12 18:24:20 -0500 |
| commit | dfcece22a2cb1b45e0cbf8531709250fde686119 (patch) | |
| tree | 15ab418e20a3e54750e145c96e605419c305f25a /biology | |
| parent | audio/pulseaudio: update the port to 14.2 (diff) | |
biology/py-bigwig: Python access to bigWig files using libBigWig
A python extension, written in C, for quick access to bigBed files and access
to and creation of bigWig files. This extension uses libBigWig for local and
remote file access.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/py-bigwig/Makefile | 21 | ||||
| -rw-r--r-- | biology/py-bigwig/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-bigwig/pkg-descr | 5 |
4 files changed, 30 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 73af8b5788bd..25eba238a6ad 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -123,6 +123,7 @@ SUBDIR += protomol SUBDIR += psi88 SUBDIR += py-Genesis-PyAPI + SUBDIR += py-bigwig SUBDIR += py-biom-format SUBDIR += py-biopython SUBDIR += py-bx-python diff --git a/biology/py-bigwig/Makefile b/biology/py-bigwig/Makefile new file mode 100644 index 000000000000..ab33b4650777 --- /dev/null +++ b/biology/py-bigwig/Makefile @@ -0,0 +1,21 @@ +PORTNAME= pyBigWig +DISTVERSION= 0.3.18 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Python access to bigWig files using libBigWig + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +LIB_DEPENDS= libcurl.so:ftp/curl + +USES= localbase python +USE_PYTHON= autoplist distutils + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.so + +.include <bsd.port.mk> diff --git a/biology/py-bigwig/distinfo b/biology/py-bigwig/distinfo new file mode 100644 index 000000000000..35e26a9f88d0 --- /dev/null +++ b/biology/py-bigwig/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1617288519 +SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc +SIZE (pyBigWig-0.3.18.tar.gz) = 64834 diff --git a/biology/py-bigwig/pkg-descr b/biology/py-bigwig/pkg-descr new file mode 100644 index 000000000000..825fb27ac6f0 --- /dev/null +++ b/biology/py-bigwig/pkg-descr @@ -0,0 +1,5 @@ +A python extension, written in C, for quick access to bigBed files and access +to and creation of bigWig files. This extension uses libBigWig for local and +remote file access. + +WWW: https://pypi.org/project/pyBigWig/ |