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authorKris Kennaway <kris@FreeBSD.org>2005-11-05 09:07:44 +0000
committerKris Kennaway <kris@FreeBSD.org>2005-11-05 09:07:44 +0000
commitb1cf59535c70b37f79dbb4a7374b9908cd760c4c (patch)
treede86c8c77ebfec33fb4888f702c1c1fc593cce83 /biology
parent- update for cairo release (diff)
Remove expired ports
Notes
Notes: svn path=/head/; revision=147349
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/nclever/Makefile35
-rw-r--r--biology/nclever/distinfo2
-rw-r--r--biology/nclever/files/patch-main11
-rw-r--r--biology/nclever/files/patch-makefile47
-rw-r--r--biology/nclever/pkg-descr8
-rw-r--r--biology/nclever/pkg-plist6
7 files changed, 0 insertions, 110 deletions
diff --git a/biology/Makefile b/biology/Makefile
index c81dd0446941..1af48c9dff8e 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -40,7 +40,6 @@
SUBDIR += mopac
SUBDIR += nab
SUBDIR += ncbi-toolkit
- SUBDIR += nclever
SUBDIR += ortep3
SUBDIR += p5-AcePerl
SUBDIR += p5-Bio-ASN1-EntrezGene
diff --git a/biology/nclever/Makefile b/biology/nclever/Makefile
deleted file mode 100644
index 08a71e3f92d5..000000000000
--- a/biology/nclever/Makefile
+++ /dev/null
@@ -1,35 +0,0 @@
-# New ports collection makefile for: nclever
-# Date created: 17 August 2001
-# Whom: Tony Maher
-#
-# $FreeBSD$
-#
-
-PORTNAME= nclever
-PORTVERSION= 4.0
-CATEGORIES= biology
-MASTER_SITES= ftp://megasun.bch.umontreal.ca/pub/nclever/
-DISTNAME= ${PORTNAME}${PORTVERSION}
-EXTRACT_SUFX= .tar.Z
-
-MAINTAINER= tonym@biolateral.com.au
-COMMENT= NClever is a character-based version of NCBI's Entrez program
-
-BUILD_DEPENDS= ${LOCALBASE}/lib/ncbi/libncbi.a:${PORTSDIR}/biology/ncbi-toolkit
-
-BROKEN= Unfetchable
-DEPRECATED= "${BROKEN}"
-EXPIRATION_DATE=2005-09-22
-
-do-install:
- @${MKDIR} ${PREFIX}/bin
- @${INSTALL_PROGRAM} ${WRKSRC}/nclever ${PREFIX}/bin
-.if !defined(NOPORTDOCS)
- @${MKDIR} ${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/nclever_manual.txt ${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/nclever.citation ${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/sample_script1.txt ${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/sample_script2.txt ${DOCSDIR}
-.endif
-
-.include <bsd.port.mk>
diff --git a/biology/nclever/distinfo b/biology/nclever/distinfo
deleted file mode 100644
index f251fe985118..000000000000
--- a/biology/nclever/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 (nclever4.0.tar.Z) = ef1c97fe8769b41e0fa8773848d70836
-SIZE (nclever4.0.tar.Z) = 80935
diff --git a/biology/nclever/files/patch-main b/biology/nclever/files/patch-main
deleted file mode 100644
index 0014e55b9ef8..000000000000
--- a/biology/nclever/files/patch-main
+++ /dev/null
@@ -1,11 +0,0 @@
---- main.c.orig Mon Sep 24 16:34:16 2001
-+++ main.c Mon Sep 24 16:37:26 2001
-@@ -358,7 +358,7 @@
- /* Read a line from stdin */
- static Boolean GetCommand(void)
- {
-- if (!gets(Command)) return(FALSE);
-+ if (!fgets(Command,MAXLINELEN-1,stdin)) return(FALSE);
- if (EchoCommands) fprintf(CmdStream,"%s\n",Command);
- return(TRUE);
- }
diff --git a/biology/nclever/files/patch-makefile b/biology/nclever/files/patch-makefile
deleted file mode 100644
index 1a97f20d9bd3..000000000000
--- a/biology/nclever/files/patch-makefile
+++ /dev/null
@@ -1,47 +0,0 @@
---- Makefile.orig Thu Dec 7 11:11:31 2000
-+++ Makefile Thu Dec 7 11:34:11 2000
-@@ -29,7 +29,8 @@
- # NCBI librairies are needed.
-
- # Set the correct path to the NCBI package
--NCBI = /usr/local/lib/NCBI
-+NCBILIB = /usr/local/lib/ncbi
-+NCBIINC = /usr/local/include/ncbi
-
- # Set the name of your ANSI C compiler
- CC = gcc
-@@ -39,7 +40,7 @@
- LIBSNCBI = -lncbiNacc -lnetentr -lncbicdr -lncbiobj -lnetcli -lncbi
- # System linking libraries (these are used under Solaris 2.6;
- # adjust according to your site).
--LIBSSYS = -lm -lsocket -lnsl -lxnet
-+LIBSSYS = -lm
-
- #
- # Nothing to adjust below this line !
-@@ -50,20 +51,20 @@
- all: nclever
-
- nclever: $(OBJS)
-- $(CC) $(CCFLAGS) -o nclever -L$(NCBI)/lib $(OBJS) $(LIBSNCBI) $(LIBSSYS)
-+ $(CC) $(CCFLAGS) -o nclever -L$(NCBILIB) $(OBJS) $(LIBSNCBI) $(LIBSSYS)
- strip nclever
-
- main.o: main.c main.h
-- $(CC) $(CCFLAGS) -c -I$(NCBI)/include main.c
-+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) main.c
-
- lists.o: lists.c main.h
-- $(CC) $(CCFLAGS) -c -I$(NCBI)/include lists.c
-+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) lists.c
-
- print.o: print.c main.h
-- $(CC) $(CCFLAGS) -c -I$(NCBI)/include print.c
-+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) print.c
-
- entinfo.o: entinfo.c main.h
-- $(CC) $(CCFLAGS) -c -I$(NCBI)/include entinfo.c
-+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) entinfo.c
-
- clean:
- rm *.o
diff --git a/biology/nclever/pkg-descr b/biology/nclever/pkg-descr
deleted file mode 100644
index 88fe809475c6..000000000000
--- a/biology/nclever/pkg-descr
+++ /dev/null
@@ -1,8 +0,0 @@
-NClever is a character-based version of NCBI's Entrez program. It is an
-interactive tool that allows easy browsing of the Entrez database.
-
-More information available at:
-WWW: ftp://megasun.bch.umontreal.ca/pub/nclever
-
---
-Tony Maher <tonym@biolateral.com.au>
diff --git a/biology/nclever/pkg-plist b/biology/nclever/pkg-plist
deleted file mode 100644
index 9b4616487e0a..000000000000
--- a/biology/nclever/pkg-plist
+++ /dev/null
@@ -1,6 +0,0 @@
-bin/nclever
-%%PORTDOCS%%%%DOCSDIR%%/nclever.citation
-%%PORTDOCS%%%%DOCSDIR%%/nclever_manual.txt
-%%PORTDOCS%%%%DOCSDIR%%/sample_script1.txt
-%%PORTDOCS%%%%DOCSDIR%%/sample_script2.txt
-%%PORTDOCS%%@dirrm %%DOCSDIR%%