diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2018-08-07 07:50:40 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2018-08-07 07:50:40 +0000 |
| commit | 8c68fd9a64b2e1fb0cdb83f20f3473e97fa23194 (patch) | |
| tree | 2a47dda286d510fb709b215feb53157ed91c4759 /biology | |
| parent | devel/bazel: Update 0.15.0 -> 0.16.0 (diff) | |
New port: biology/py-orange3-single-cell: Orange add-on for gene expression of single cell data
Notes
Notes:
svn path=/head/; revision=476578
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/Makefile | 35 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-orange3-single-cell/pkg-descr | 4 |
4 files changed, 43 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 95ad383113c2..080823a55f9b 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -106,6 +106,7 @@ SUBDIR += py-cutadapt SUBDIR += py-macs2 SUBDIR += py-orange3-bioinformatics + SUBDIR += py-orange3-single-cell SUBDIR += py-pysam SUBDIR += pycogent SUBDIR += pyfasta diff --git a/biology/py-orange3-single-cell/Makefile b/biology/py-orange3-single-cell/Makefile new file mode 100644 index 000000000000..ac52f8bfe390 --- /dev/null +++ b/biology/py-orange3-single-cell/Makefile @@ -0,0 +1,35 @@ +# $FreeBSD$ + +PORTNAME= orange3-single-cell +DISTVERSION= 0.7.0 +CATEGORIES= biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Orange add-on for gene expression of single cell data + +LICENSE= AGPLv3+ + +RUN_DEPENDS= orange3>0:misc/orange3 \ + ${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=0.20:math/py-pandas@${PY_FLAVOR} + +USES= python:3.4+ +USE_GITHUB= yes +GH_ACCOUNT= biolab +USE_PYTHON= distutils autoplist + +OPTIONS_DEFINE= DOCS + +DOCS_BUILD_DEPENDS= gmake:devel/gmake \ + ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR} + +pre-build-DOCS-on: + @cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${GMAKE} html htmlhelp SPHINXBUILD=${LOCALBASE}/bin/sphinx-build-${PYTHON_VER} + +pre-build-DOCS-off: + @${REINPLACE_CMD} "s|^ include_documentation| #include_documentation|" ${WRKSRC}/setup.py + +.include <bsd.port.mk> diff --git a/biology/py-orange3-single-cell/distinfo b/biology/py-orange3-single-cell/distinfo new file mode 100644 index 000000000000..1b2126dcadb0 --- /dev/null +++ b/biology/py-orange3-single-cell/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1533608220 +SHA256 (biolab-orange3-single-cell-0.7.0_GH0.tar.gz) = 73db7716d0e9f4c7d17a41770e2b72d94266a49b6ddbf79aba430c7bbcfa7753 +SIZE (biolab-orange3-single-cell-0.7.0_GH0.tar.gz) = 15862251 diff --git a/biology/py-orange3-single-cell/pkg-descr b/biology/py-orange3-single-cell/pkg-descr new file mode 100644 index 000000000000..1716d0dae0dc --- /dev/null +++ b/biology/py-orange3-single-cell/pkg-descr @@ -0,0 +1,4 @@ +The Single Cell add-on for Orange3 adds functionality for analysis of single +cell data. + +WWW: https://singlecell.biolab.si/ |