diff options
author | Rene Ladan <rene@FreeBSD.org> | 2014-04-18 11:17:45 +0000 |
---|---|---|
committer | Rene Ladan <rene@FreeBSD.org> | 2014-04-18 11:17:45 +0000 |
commit | 8b3c8800eb286d7ad9ba4d8e56c1f94a436e2ca9 (patch) | |
tree | 05eb10cc44d61de9b8f970b16f50e25c5a245d53 /biology | |
parent | - Update to 2.0.0 - announce message is here: (diff) |
Remove expired ports:
2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared
2014-04-17 science/flounder: Unmaintained since 2002
2014-04-17 security/nbaudit: Unmaintained since 2002
2014-04-17 security/saint: Unmaintained since 2002
2014-04-17 graphics/gozer: Unmaintained since 2002
2014-04-17 misc/pdfmap: Unmaintained since 2002
2014-04-17 devel/showgrammar: Unmaintained since 2002
2014-04-17 biology/libgenome: Unmaintained since 2002
2014-04-17 deskutils/narval: Unmaintained since 2002
2014-04-17 devel/fampp: Unmaintained since 2002
2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002
2014-04-17 misc/wmfirew: Unmaintained since 2002
2014-04-17 x11-wm/e16utils: Unmaintained since 2002
2014-04-17 misc/salias: Unmaintained since 2002
2014-04-17 print/latex2slides: Unmaintained since 2002
2014-04-17 lang/sxm: Unmaintained since 2002
2014-04-17 textproc/pybook: Unmaintained since 2002
2014-04-17 mail/mailcrypt: Unmaintained since 2002
2014-04-17 japanese/elvis: Unmaintained since 2002
2014-04-17 devel/prototype: Unmaintained since 2002
2014-04-17 print/wprint: Unmaintained since 2002
2014-04-17 science/euler: Unmaintained since 2002
2014-04-17 multimedia/gopchop: Unmaintained since 2002
2014-04-17 science/gdis: Unmaintained since 2002
2014-04-17 net/googolplex: Unmaintained since 2002
2014-04-17 lang/logo: Unmaintained since 2002
2014-04-17 textproc/roap: Unmaintained since 2002
2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002
2014-04-17 games/yamsweeper: Unmaintained since 2002
2014-04-17 net-mgmt/echolot: Unmaintained since 2002
2014-04-17 security/pam_smb: Unmaintained since 2002
2014-04-18 devel/lua-redis-parser: Broken for more than 6 months
2014-04-18 biology/finchtv: Broken for more than 6 months
2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
Notes
Notes:
svn path=/head/; revision=351531
Diffstat (limited to 'biology')
-rw-r--r-- | biology/Makefile | 2 | ||||
-rw-r--r-- | biology/finchtv/Makefile | 44 | ||||
-rw-r--r-- | biology/finchtv/distinfo | 2 | ||||
-rw-r--r-- | biology/finchtv/files/pkg-message.in | 15 | ||||
-rw-r--r-- | biology/finchtv/pkg-descr | 19 | ||||
-rw-r--r-- | biology/finchtv/pkg-plist | 133 | ||||
-rw-r--r-- | biology/libgenome/Makefile | 41 | ||||
-rw-r--r-- | biology/libgenome/distinfo | 2 | ||||
-rw-r--r-- | biology/libgenome/files/patch-configure | 10 | ||||
-rw-r--r-- | biology/libgenome/files/patch-include_gn_gnDefs.h | 10 | ||||
-rw-r--r-- | biology/libgenome/pkg-descr | 12 | ||||
-rw-r--r-- | biology/libgenome/pkg-plist | 345 |
12 files changed, 0 insertions, 635 deletions
diff --git a/biology/Makefile b/biology/Makefile index 8667fb5d7503..458c72813d4e 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -21,7 +21,6 @@ SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastdnaml - SUBDIR += finchtv SUBDIR += fluctuate SUBDIR += garlic SUBDIR += gff2ps @@ -33,7 +32,6 @@ SUBDIR += jalview SUBDIR += lagan SUBDIR += lamarc - SUBDIR += libgenome SUBDIR += libsbml SUBDIR += linux-foldingathome SUBDIR += mafft diff --git a/biology/finchtv/Makefile b/biology/finchtv/Makefile deleted file mode 100644 index e552082c6b83..000000000000 --- a/biology/finchtv/Makefile +++ /dev/null @@ -1,44 +0,0 @@ -# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar> -# $FreeBSD$ - -PORTNAME= finchtv -PORTVERSION= 1.3.1 -CATEGORIES= biology -MASTER_SITES= http://www.geospiza.com/finchtv/download/programs/linux/ -DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/g} - -MAINTAINER= ports@FreeBSD.org -COMMENT= A chromatogram trace viewer - -BROKEN= fails to checksum -DEPRECATED= Broken for more than 6 months -EXPIRATION_DATE= 2014-04-18 - -USE_LINUX?= yes -ONLY_FOR_ARCHS= i386 -NO_BUILD= yes -SUB_FILES= pkg-message -STRIP= - -NO_STAGE= yes - -OPTIONS_DEFINE= DOCS - -.include <bsd.port.options.mk> - -do-install: -.if ${PORT_OPTIONS:MDOCS} - @${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/License.txt ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/ReleaseNotes.txt ${DOCSDIR} - ${CP} -R ${WRKSRC}/Help ${DOCSDIR} -.endif - @${MKDIR} ${EXAMPLESDIR} - ${CP} -R ${WRKSRC}/SampleData/ ${EXAMPLESDIR} - ${BRANDELF} -t Linux ${WRKSRC}/finchtv - ${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin - -post-install: - @ ${CAT} ${PKGMESSAGE} - -.include <bsd.port.mk> diff --git a/biology/finchtv/distinfo b/biology/finchtv/distinfo deleted file mode 100644 index e27615be3a9a..000000000000 --- a/biology/finchtv/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (finchtv_1_3_1.tar.gz) = c627f214adf35b5b3809c50e4f9b11ecce249364ed2f37e0a7219e6532d15ef1 -SIZE (finchtv_1_3_1.tar.gz) = 6706911 diff --git a/biology/finchtv/files/pkg-message.in b/biology/finchtv/files/pkg-message.in deleted file mode 100644 index 717cc61aa2d6..000000000000 --- a/biology/finchtv/files/pkg-message.in +++ /dev/null @@ -1,15 +0,0 @@ - ----------------------------------------------------------------------------- - - As reported in the ReleaseNotes.txt file, the 'Online Help' menu may not - work. If you need to access the FinchTV help pages/documentation see - below. - - FinchTV Help pages are installed under - %%DOCSDIR%% - and can be accessed using the following URL: - file://%%DOCSDIR%%/Help/index.htm - - They are also available online at http://geospiza.com/finchtv/help - ----------------------------------------------------------------------------- diff --git a/biology/finchtv/pkg-descr b/biology/finchtv/pkg-descr deleted file mode 100644 index 3866c7cb671c..000000000000 --- a/biology/finchtv/pkg-descr +++ /dev/null @@ -1,19 +0,0 @@ -FinchTV is the popular way to view sequence traces on Linux, Mac OSX, -and Windows. FinchTV is the only trace viewer that can display an entire -trace in a scalable multi-pane view. - -FinchTV reads chromatogram files from the most popular formats. In -addition to displaying a multi-color sequence above the trace, FinchTV -displays quality values (when available). You can adjust the scale in -both vertical and horizontal directions in either single or multipane -views. - -FinchTV can: -o print traces (on a single page or control the number of panels printed) -o export sequences in FASTA format -o open gzipped files -o open files with drag and drop -o shows additional details about the file (sample ID, run start and stop - times, spacing, mobility, lane number, etc.) - -WWW: http://www.geospiza.com/finchtv/index.htm diff --git a/biology/finchtv/pkg-plist b/biology/finchtv/pkg-plist deleted file mode 100644 index 7adbea413d1d..000000000000 --- a/biology/finchtv/pkg-plist +++ /dev/null @@ -1,133 +0,0 @@ -bin/finchtv -%%PORTDOCS%%%%DOCSDIR%%/License.txt -%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ToolBars-Toolbar.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Multi.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-sMenu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Std.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-ToolBar.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-wMenu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ResizingTheWindow.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ScalingTraceData.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/Toolbars-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ContextualMenu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Toolsbars2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/contextualMenus.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Edit1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/GoToBase.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoDetails.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoGen.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoSeq.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/QuickStart.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/rangeSelection.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save3.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Searches.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/SelectBases.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/StatusBar.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped2.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped3.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped4.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped5.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped6.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped7.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped8.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/toolbars1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls1.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Basecalls-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-BaseCalls.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Q20.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Raw.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RawView.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC-menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/EditingData.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/ExportingData.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Details.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-General.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Seq.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Compressed.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Goto.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Numbers.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Options-Menupng.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-OptionsDialog.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save-Menu.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search-Findbox.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases-Status.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-contextual.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/A-Introduction/about.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.psd -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-lglogo.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-smlogo.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/HelpTitle.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/MenuLine.gif -%%PORTDOCS%%%%DOCSDIR%%/Help/media/Title.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/VerNum.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/finch-bulllet.png -%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV-cover.jpg -%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV_Mac_App.png -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/01-About.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/02-Features.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/03-QuickStart.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/01-DataViews.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/02-ScalingTraces.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/03-ResizingTheWindow.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/04-ToolBars.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/05-ContextualMenus.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/10-SavingData.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/02-DisplayingData.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/03-PrintingATrace.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/04-ExportingData.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/05-NavigatingInTraces.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/06-SelectingData.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/07-SearchingForSequences.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/08-BLASTSearches.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/09-EditingData.html -%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/01-OpenFiles.html -%%PORTDOCS%%%%DOCSDIR%%/Help/index.htm -%%PORTDOCS%%%%DOCSDIR%%/Help/style.css -%%EXAMPLESDIR%%/78I21_1101.y1.ab1 -%%EXAMPLESDIR%%/G33P641RB11.scf.gz -%%EXAMPLESDIR%%/G33P771FF3.scf -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/B-FinchTV_Interface -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/Screens -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/C-WorkingWithYourData -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/A-Introduction -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/A-Introduction -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/B-FinchTV_Interface -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/C-WorkingWithYourData -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages -%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help -%%PORTDOCS%%@dirrm %%DOCSDIR%% -@dirrm %%EXAMPLESDIR%% diff --git a/biology/libgenome/Makefile b/biology/libgenome/Makefile deleted file mode 100644 index 30a0bf64a84b..000000000000 --- a/biology/libgenome/Makefile +++ /dev/null @@ -1,41 +0,0 @@ -# Created by: ijliao -# $FreeBSD$ - -PORTNAME= libgenome -PORTVERSION= 0.5.2 -PORTREVISION= 2 -CATEGORIES= biology -MASTER_SITES= http://pages.cs.wisc.edu/~darling/libgenome/releases/ -DISTNAME= libGenome-${PORTVERSION} - -MAINTAINER= ports@FreeBSD.org -COMMENT= Toolkit for developing bioinformatic related software in C++ - -LICENSE= GPLv2 - -DEPRECATED= Unmaintained since 2002 -EXPIRATION_DATE= 2014-04-17 -MAKE_JOBS_UNSAFE=yes - -USE_AUTOTOOLS= libtool -WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} -GNU_CONFIGURE= yes -USE_LDCONFIG= yes - -OPTIONS_DEFINE= DOCS - -NO_STAGE= yes -post-patch: - @${REINPLACE_CMD} -e 's|-O2|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in - -.include <bsd.port.options.mk> - -post-install: -.if ${PORT_OPTIONS:MDOCS} - @${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/doc/html/*.css ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/doc/html/*.png ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/doc/html/*.html ${DOCSDIR} -.endif - -.include <bsd.port.mk> diff --git a/biology/libgenome/distinfo b/biology/libgenome/distinfo deleted file mode 100644 index ac7eae6b9ef4..000000000000 --- a/biology/libgenome/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (libGenome-0.5.2.tar.gz) = 4a372840880be225cb73e67d7fa2b65ba997759c1779e22604ae66e76922cb32 -SIZE (libGenome-0.5.2.tar.gz) = 981986 diff --git a/biology/libgenome/files/patch-configure b/biology/libgenome/files/patch-configure deleted file mode 100644 index 70e0e4df0ff5..000000000000 --- a/biology/libgenome/files/patch-configure +++ /dev/null @@ -1,10 +0,0 @@ ---- configure.orig Fri Apr 5 03:02:28 2002 -+++ configure Wed Aug 14 05:14:48 2002 -@@ -6761,6 +6761,7 @@ - - # This can be used to rebuild libtool when needed - LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh" -+$ac_aux_dir/ltconfig $LIBTOOL_DEPS - - # Always use our own libtool. - LIBTOOL='$(SHELL) $(top_builddir)/libtool' diff --git a/biology/libgenome/files/patch-include_gn_gnDefs.h b/biology/libgenome/files/patch-include_gn_gnDefs.h deleted file mode 100644 index 081e15cc6569..000000000000 --- a/biology/libgenome/files/patch-include_gn_gnDefs.h +++ /dev/null @@ -1,10 +0,0 @@ ---- include/gn/gnDefs.h.orig 2003-05-01 08:24:50.000000000 +0000 -+++ include/gn/gnDefs.h -@@ -17,6 +17,7 @@ - - #include <limits.h> - #include <float.h> -+#include <string.h> - #include "gn/gnSetup.h" - - // bool diff --git a/biology/libgenome/pkg-descr b/biology/libgenome/pkg-descr deleted file mode 100644 index 77433047e3e5..000000000000 --- a/biology/libgenome/pkg-descr +++ /dev/null @@ -1,12 +0,0 @@ -libGenome is a freely available toolkit for developing bioinformatic related -software in C++. It is intended to take the hassle out of performing common -tasks on genetic sequence and annotation data. - -Among other things, libGenome can help you: - - Read and write Multi-FastA format files - - Read and write GenBank flat file database entries - - Append, chop, truncate, reverse, complement, translate, and otherwise - mangle sequence data - - Access annotation in GenBank flat files - -WWW: http://pages.cs.wisc.edu/~darling/libgenome/ diff --git a/biology/libgenome/pkg-plist b/biology/libgenome/pkg-plist deleted file mode 100644 index c5aa0d96c759..000000000000 --- a/biology/libgenome/pkg-plist +++ /dev/null @@ -1,345 +0,0 @@ -include/gn/gnABISource.h -include/gn/gnBaseFeature.h -include/gn/gnBaseFilter.h -include/gn/gnBaseHeader.h -include/gn/gnBaseQualifier.h -include/gn/gnBaseSource.h -include/gn/gnBaseSpec.h -include/gn/gnClone.h -include/gn/gnCompare.h -include/gn/gnContigSpec.h -include/gn/gnDNASequence.h -include/gn/gnDNXSource.h -include/gn/gnDataBaseSource.h 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