Remove expired ports:

2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared
2014-04-17 science/flounder: Unmaintained since 2002
2014-04-17 security/nbaudit: Unmaintained since 2002
2014-04-17 security/saint: Unmaintained since 2002
2014-04-17 graphics/gozer: Unmaintained since 2002
2014-04-17 misc/pdfmap: Unmaintained since 2002
2014-04-17 devel/showgrammar: Unmaintained since 2002
2014-04-17 biology/libgenome: Unmaintained since 2002
2014-04-17 deskutils/narval: Unmaintained since 2002
2014-04-17 devel/fampp: Unmaintained since 2002
2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002
2014-04-17 misc/wmfirew: Unmaintained since 2002
2014-04-17 x11-wm/e16utils: Unmaintained since 2002
2014-04-17 misc/salias: Unmaintained since 2002
2014-04-17 print/latex2slides: Unmaintained since 2002
2014-04-17 lang/sxm: Unmaintained since 2002
2014-04-17 textproc/pybook: Unmaintained since 2002
2014-04-17 mail/mailcrypt: Unmaintained since 2002
2014-04-17 japanese/elvis: Unmaintained since 2002
2014-04-17 devel/prototype: Unmaintained since 2002
2014-04-17 print/wprint: Unmaintained since 2002
2014-04-17 science/euler: Unmaintained since 2002
2014-04-17 multimedia/gopchop: Unmaintained since 2002
2014-04-17 science/gdis: Unmaintained since 2002
2014-04-17 net/googolplex: Unmaintained since 2002
2014-04-17 lang/logo: Unmaintained since 2002
2014-04-17 textproc/roap: Unmaintained since 2002
2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002
2014-04-17 games/yamsweeper: Unmaintained since 2002
2014-04-17 net-mgmt/echolot: Unmaintained since 2002
2014-04-17 security/pam_smb: Unmaintained since 2002
2014-04-18 devel/lua-redis-parser: Broken for more than 6 months
2014-04-18 biology/finchtv: Broken for more than 6 months
2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)

12 files changed, 0 insertions, 635 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 8667fb5d7503..458c72813d4e 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -21,7 +21,6 @@
     SUBDIR += fasta
     SUBDIR += fasta3
     SUBDIR += fastdnaml
-    SUBDIR += finchtv
     SUBDIR += fluctuate
     SUBDIR += garlic
     SUBDIR += gff2ps
@@ -33,7 +32,6 @@
     SUBDIR += jalview
     SUBDIR += lagan
     SUBDIR += lamarc
-    SUBDIR += libgenome
     SUBDIR += libsbml
     SUBDIR += linux-foldingathome
     SUBDIR += mafft
diff --git a/biology/finchtv/Makefile b/biology/finchtv/Makefile
deleted file mode 100644
index e552082c6b83..000000000000
--- a/biology/finchtv/Makefile
+++ /dev/null
@@ -1,44 +0,0 @@
-# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
-# $FreeBSD$
-
-PORTNAME=	finchtv
-PORTVERSION=	1.3.1
-CATEGORIES=	biology
-MASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
-DISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/g}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	A chromatogram trace viewer
-
-BROKEN=		fails to checksum
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2014-04-18
-
-USE_LINUX?=	yes
-ONLY_FOR_ARCHS=	i386
-NO_BUILD=	yes
-SUB_FILES=	pkg-message
-STRIP=
-
-NO_STAGE=	yes
-
-OPTIONS_DEFINE=	DOCS
-
-.include <bsd.port.options.mk>
-
-do-install:
-.if ${PORT_OPTIONS:MDOCS}
-	@${MKDIR} ${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/License.txt ${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/ReleaseNotes.txt ${DOCSDIR}
-	${CP} -R ${WRKSRC}/Help ${DOCSDIR}
-.endif
-	@${MKDIR} ${EXAMPLESDIR}
-	${CP} -R ${WRKSRC}/SampleData/ ${EXAMPLESDIR}
-	${BRANDELF} -t Linux ${WRKSRC}/finchtv
-	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
-
-post-install:
-	@ ${CAT} ${PKGMESSAGE}
-
-.include <bsd.port.mk>
diff --git a/biology/finchtv/distinfo b/biology/finchtv/distinfo
deleted file mode 100644
index e27615be3a9a..000000000000
--- a/biology/finchtv/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (finchtv_1_3_1.tar.gz) = c627f214adf35b5b3809c50e4f9b11ecce249364ed2f37e0a7219e6532d15ef1
-SIZE (finchtv_1_3_1.tar.gz) = 6706911
diff --git a/biology/finchtv/files/pkg-message.in b/biology/finchtv/files/pkg-message.in
deleted file mode 100644
index 717cc61aa2d6..000000000000
--- a/biology/finchtv/files/pkg-message.in
+++ /dev/null
@@ -1,15 +0,0 @@
-
-----------------------------------------------------------------------------
-
-  As reported in the ReleaseNotes.txt file, the 'Online Help' menu may not 
-  work. If you need to access the FinchTV help pages/documentation see
-  below.
-
-  FinchTV Help pages are installed under
-  %%DOCSDIR%%
-  and can be accessed using the following URL:
-  file://%%DOCSDIR%%/Help/index.htm
-
-  They are also available online at http://geospiza.com/finchtv/help
-
-----------------------------------------------------------------------------
diff --git a/biology/finchtv/pkg-descr b/biology/finchtv/pkg-descr
deleted file mode 100644
index 3866c7cb671c..000000000000
--- a/biology/finchtv/pkg-descr
+++ /dev/null
@@ -1,19 +0,0 @@
-FinchTV is the popular way to view sequence traces on Linux, Mac OSX,
-and Windows. FinchTV is the only trace viewer that can display an entire
-trace in a scalable multi-pane view.
-
-FinchTV reads chromatogram files from the most popular formats. In
-addition to displaying a multi-color sequence above the trace, FinchTV
-displays quality values (when available). You can adjust the scale in
-both vertical and horizontal directions in either single or multipane
-views.
-
-FinchTV can:
-o print traces (on a single page or control the number of panels printed)
-o export sequences in FASTA format
-o open gzipped files
-o open files with drag and drop
-o shows additional details about the file (sample ID, run start and stop
-  times, spacing, mobility, lane number, etc.)
-
-WWW: http://www.geospiza.com/finchtv/index.htm
diff --git a/biology/finchtv/pkg-plist b/biology/finchtv/pkg-plist
deleted file mode 100644
index 7adbea413d1d..000000000000
--- a/biology/finchtv/pkg-plist
+++ /dev/null
@@ -1,133 +0,0 @@
-bin/finchtv
-%%PORTDOCS%%%%DOCSDIR%%/License.txt
-%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ToolBars-Toolbar.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Multi.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-sMenu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Std.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-ToolBar.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-wMenu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ResizingTheWindow.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ScalingTraceData.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/Toolbars-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ContextualMenu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Toolsbars2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/contextualMenus.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Edit1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/GoToBase.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoDetails.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoGen.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoSeq.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/QuickStart.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/rangeSelection.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save3.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Searches.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/SelectBases.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/StatusBar.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped2.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped3.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped4.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped5.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped6.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped7.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped8.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/toolbars1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls1.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Basecalls-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-BaseCalls.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Q20.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Raw.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RawView.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC-menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/EditingData.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/ExportingData.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Details.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-General.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Seq.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Compressed.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Goto.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Numbers.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Options-Menupng.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-OptionsDialog.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save-Menu.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search-Findbox.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases-Status.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-contextual.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/A-Introduction/about.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.psd
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-lglogo.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-smlogo.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/HelpTitle.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/MenuLine.gif
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/Title.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/VerNum.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/finch-bulllet.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV-cover.jpg
-%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV_Mac_App.png
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/01-About.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/02-Features.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/03-QuickStart.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/01-DataViews.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/02-ScalingTraces.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/03-ResizingTheWindow.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/04-ToolBars.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/05-ContextualMenus.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/10-SavingData.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/02-DisplayingData.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/03-PrintingATrace.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/04-ExportingData.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/05-NavigatingInTraces.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/06-SelectingData.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/07-SearchingForSequences.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/08-BLASTSearches.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/09-EditingData.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/01-OpenFiles.html
-%%PORTDOCS%%%%DOCSDIR%%/Help/index.htm
-%%PORTDOCS%%%%DOCSDIR%%/Help/style.css
-%%EXAMPLESDIR%%/78I21_1101.y1.ab1
-%%EXAMPLESDIR%%/G33P641RB11.scf.gz
-%%EXAMPLESDIR%%/G33P771FF3.scf
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/B-FinchTV_Interface
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/Screens
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/C-WorkingWithYourData
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/A-Introduction
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/A-Introduction
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/B-FinchTV_Interface
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/C-WorkingWithYourData
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-@dirrm %%EXAMPLESDIR%%
diff --git a/biology/libgenome/Makefile b/biology/libgenome/Makefile
deleted file mode 100644
index 30a0bf64a84b..000000000000
--- a/biology/libgenome/Makefile
+++ /dev/null
@@ -1,41 +0,0 @@
-# Created by: ijliao
-# $FreeBSD$
-
-PORTNAME=	libgenome
-PORTVERSION=	0.5.2
-PORTREVISION=	2
-CATEGORIES=	biology
-MASTER_SITES=	http://pages.cs.wisc.edu/~darling/libgenome/releases/
-DISTNAME=	libGenome-${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Toolkit for developing bioinformatic related software in C++
-
-LICENSE=	GPLv2
-
-DEPRECATED=	Unmaintained since 2002
-EXPIRATION_DATE=	2014-04-17
-MAKE_JOBS_UNSAFE=yes
-
-USE_AUTOTOOLS=	libtool
-WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
-GNU_CONFIGURE=	yes
-USE_LDCONFIG=	yes
-
-OPTIONS_DEFINE=	DOCS
-
-NO_STAGE=	yes
-post-patch:
-	@${REINPLACE_CMD} -e 's|-O2|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in
-
-.include <bsd.port.options.mk>
-
-post-install:
-.if ${PORT_OPTIONS:MDOCS}
-	@${MKDIR} ${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/doc/html/*.css ${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/doc/html/*.png ${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/doc/html/*.html ${DOCSDIR}
-.endif
-
-.include <bsd.port.mk>
diff --git a/biology/libgenome/distinfo b/biology/libgenome/distinfo
deleted file mode 100644
index ac7eae6b9ef4..000000000000
--- a/biology/libgenome/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (libGenome-0.5.2.tar.gz) = 4a372840880be225cb73e67d7fa2b65ba997759c1779e22604ae66e76922cb32
-SIZE (libGenome-0.5.2.tar.gz) = 981986
diff --git a/biology/libgenome/files/patch-configure b/biology/libgenome/files/patch-configure
deleted file mode 100644
index 70e0e4df0ff5..000000000000
--- a/biology/libgenome/files/patch-configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- configure.orig	Fri Apr  5 03:02:28 2002
-+++ configure	Wed Aug 14 05:14:48 2002
-@@ -6761,6 +6761,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/biology/libgenome/files/patch-include_gn_gnDefs.h b/biology/libgenome/files/patch-include_gn_gnDefs.h
deleted file mode 100644
index 081e15cc6569..000000000000
--- a/biology/libgenome/files/patch-include_gn_gnDefs.h
+++ /dev/null
@@ -1,10 +0,0 @@
---- include/gn/gnDefs.h.orig	2003-05-01 08:24:50.000000000 +0000
-+++ include/gn/gnDefs.h
-@@ -17,6 +17,7 @@
- 
- #include <limits.h>
- #include <float.h>
-+#include <string.h>
- #include "gn/gnSetup.h"
- 
- // bool	
diff --git a/biology/libgenome/pkg-descr b/biology/libgenome/pkg-descr
deleted file mode 100644
index 77433047e3e5..000000000000
--- a/biology/libgenome/pkg-descr
+++ /dev/null
@@ -1,12 +0,0 @@
-libGenome is a freely available toolkit for developing bioinformatic related
-software in C++. It is intended to take the hassle out of performing common
-tasks on genetic sequence and annotation data.
-
-Among other things, libGenome can help you:
-   - Read and write Multi-FastA format files
-   - Read and write GenBank flat file database entries
-   - Append, chop, truncate, reverse, complement, translate, and otherwise
-     mangle sequence data
-   - Access annotation in GenBank flat files
-
-WWW: http://pages.cs.wisc.edu/~darling/libgenome/
diff --git a/biology/libgenome/pkg-plist b/biology/libgenome/pkg-plist
deleted file mode 100644
index c5aa0d96c759..000000000000
--- a/biology/libgenome/pkg-plist
+++ /dev/null
@@ -1,345 +0,0 @@
-include/gn/gnABISource.h
-include/gn/gnBaseFeature.h
-include/gn/gnBaseFilter.h
-include/gn/gnBaseHeader.h
-include/gn/gnBaseQualifier.h
-include/gn/gnBaseSource.h
-include/gn/gnBaseSpec.h
-include/gn/gnClone.h
-include/gn/gnCompare.h
-include/gn/gnContigSpec.h
-include/gn/gnDNASequence.h
-include/gn/gnDNXSource.h
-include/gn/gnDataBaseSource.h
-include/gn/gnDebug.h
-include/gn/gnDefs.h
-include/gn/gnException.h
-include/gn/gnExceptionCode.h
-include/gn/gnFASSource.h
-include/gn/gnFastTranslator.h
-include/gn/gnFeature.h
-include/gn/gnFileContig.h
-include/gn/gnFileSource.h
-include/gn/gnFilter.h
-include/gn/gnFragmentSpec.h
-include/gn/gnGBKSource.h
-include/gn/gnGenomeSpec.h
-include/gn/gnLocation.h
-include/gn/gnMultiSpec.h
-include/gn/gnPosSpecificTranslator.h
-include/gn/gnProteinSequence.h
-include/gn/gnRAWSource.h
-include/gn/gnRNASequence.h
-include/gn/gnSEQSource.h
-include/gn/gnSequence.h
-include/gn/gnSetup.h
-include/gn/gnSourceFactory.h
-include/gn/gnSourceHeader.h
-include/gn/gnSourceQualifier.h
-include/gn/gnSourceSpec.h
-include/gn/gnStringHeader.h
-include/gn/gnStringQualifier.h
-include/gn/gnStringSpec.h
-include/gn/gnStringTools.h
-include/gn/gnTranslator.h
-include/gn/gnVersion.h
-lib/libGenome.a
-lib/libGenome.la
-lib/libGenome.so
-lib/libGenome.so.0
-%%PORTDOCS%%%%DOCSDIR%%/GNPREC_8H-source.html
-%%PORTDOCS%%%%DOCSDIR%%/GNPREC_8H.html
-%%PORTDOCS%%%%DOCSDIR%%/annotated.html
-%%PORTDOCS%%%%DOCSDIR%%/classArray-members.html
-%%PORTDOCS%%%%DOCSDIR%%/classArray.html
-%%PORTDOCS%%%%DOCSDIR%%/classes.html
-%%PORTDOCS%%%%DOCSDIR%%/classgnABISource-members.html
-%%PORTDOCS%%%%DOCSDIR%%/classgnABISource.html
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