diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2021-05-26 14:49:16 -0700 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2021-05-26 15:25:22 -0700 |
| commit | 5b018ca96217b47530cb3e48dd6f869be279ebaa (patch) | |
| tree | d14241e174de172e470c9a86653515db0eb335ac /biology | |
| parent | biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera... (diff) | |
biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/taxonkit/Makefile | 19 | ||||
| -rw-r--r-- | biology/taxonkit/distinfo | 5 | ||||
| -rw-r--r-- | biology/taxonkit/pkg-descr | 10 |
4 files changed, 35 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 38761df9c785..4025c269aef3 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -179,6 +179,7 @@ SUBDIR += subread SUBDIR += tRNAscan-SE SUBDIR += tabixpp + SUBDIR += taxonkit SUBDIR += treekin SUBDIR += treepuzzle SUBDIR += trimadap diff --git a/biology/taxonkit/Makefile b/biology/taxonkit/Makefile new file mode 100644 index 000000000000..305f8f97e3fc --- /dev/null +++ b/biology/taxonkit/Makefile @@ -0,0 +1,19 @@ +PORTNAME= taxonkit +DISTVERSIONPREFIX= v +DISTVERSION= 0.8.0 +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Practical and efficient NCBI taxonomy toolkit + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= go:modules + +GO_MODULE= github.com/shenwei356/taxonkit +GO_TARGET= ./${PORTNAME} + +PLIST_FILES= bin/${PORTNAME} + +.include <bsd.port.mk> diff --git a/biology/taxonkit/distinfo b/biology/taxonkit/distinfo new file mode 100644 index 000000000000..a85f4e8a9b3c --- /dev/null +++ b/biology/taxonkit/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1622065223 +SHA256 (go/biology_taxonkit/taxonkit-v0.8.0/v0.8.0.mod) = 9fb5139703523fd06f121e31ae420b1262ac437be1e25a0c8410c0ffa8291987 +SIZE (go/biology_taxonkit/taxonkit-v0.8.0/v0.8.0.mod) = 507 +SHA256 (go/biology_taxonkit/taxonkit-v0.8.0/v0.8.0.zip) = 087b47ad82fa3318aedb6954abdadc5d8637f07c43c4037e1b9b825214353833 +SIZE (go/biology_taxonkit/taxonkit-v0.8.0/v0.8.0.zip) = 1494298 diff --git a/biology/taxonkit/pkg-descr b/biology/taxonkit/pkg-descr new file mode 100644 index 000000000000..4bec18ee74e9 --- /dev/null +++ b/biology/taxonkit/pkg-descr @@ -0,0 +1,10 @@ +TaxonKit allows to: +* list taxonomic subtrees (TaxIds) +* query taxonomic lineage of given TaxIds +* reformat lineage in canonical ranks +* convert scientific names to TaxIds +* filter TaxIds by taxonomic rank range +* compute lowest common ancestor (LCA) for TaxIds +* create TaxId changelog from dump archives + +WWW: https://bioinf.shenwei.me/taxonkit/ |