diff options
| author | Mark Linimon <linimon@FreeBSD.org> | 2004-06-30 06:55:56 +0000 |
|---|---|---|
| committer | Mark Linimon <linimon@FreeBSD.org> | 2004-06-30 06:55:56 +0000 |
| commit | 3152da13d88065f23b935658e48442a27ad0dcfe (patch) | |
| tree | abdeff6deae1dcb9df0f0c190ca4b7cca7a7b29d /biology | |
| parent | Add missing buildtime dependency. (diff) | |
Update to 1.7.6.1.
PR: ports/67429
Submitted by: Roman Neuhauser <neuhauser at chello dot cz>
Approved by: maintainer timeout (4 weeks)
Notes
Notes:
svn path=/head/; revision=112588
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/migrate/Makefile | 28 | ||||
| -rw-r--r-- | biology/migrate/distinfo | 4 | ||||
| -rw-r--r-- | biology/migrate/files/patch-Makefile.in | 11 | ||||
| -rw-r--r-- | biology/migrate/pkg-plist | 11 |
4 files changed, 43 insertions, 11 deletions
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile index c062600973df..f2fef7869215 100644 --- a/biology/migrate/Makefile +++ b/biology/migrate/Makefile @@ -6,7 +6,7 @@ # PORTNAME= migrate -PORTVERSION= 1.2.4 +PORTVERSION= 1.7.6.1 CATEGORIES= biology MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/ DISTNAME= ${PORTNAME}-${PORTVERSION}.src @@ -14,22 +14,32 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}.src MAINTAINER= wjv@FreeBSD.org COMMENT= A program to estimate population sizes and migration rates -WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} -CONFIGURE_WRKSRC= ${WRKSRC}/src -BUILD_WRKSRC= ${CONFIGURE_WRKSRC} -INSTALL_WRKSRC= ${CONFIGURE_WRKSRC} +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/src GNU_CONFIGURE= yes +CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} MAN1= migrate.1 +MLINKS= migrate.1 migrate-n.1 -post-install: +DOCS= HISTORY HOWTO-PARALLEL README migrate.html +EXAMPLES= README infile.benchmark infile.ep infile.msat infile.seq \ + parmfile parmfile.benchmark parmfile.ep parmfile.msat \ + parmfile.seq + +do-install: + @ ${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin @ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate + @ ${INSTALL_MAN} ${WRKSRC}/migrate.1 ${MAN1PREFIX}/man/man1 .if !defined(NOPORTDOCS) @ ${MKDIR} ${DOCSDIR}/graphics -.for docfile in HISTORY HOWTO-PARALLEL README migrate.html - @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR} +.for file in ${DOCS} + @ ${INSTALL_DATA} ${WRKSRC}/../${file} ${DOCSDIR} +.endfor + @ ${MKDIR} ${EXAMPLESDIR} +.for file in ${EXAMPLES} + @ ${INSTALL_DATA} ${WRKSRC}/../example/${file} ${EXAMPLESDIR} .endfor - @ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics + @ ${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics .endif .include <bsd.port.pre.mk> diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo index 5a9b49b70c8b..35882060c5ba 100644 --- a/biology/migrate/distinfo +++ b/biology/migrate/distinfo @@ -1,2 +1,2 @@ -MD5 (migrate-1.2.4.src.tar.gz) = d5b90497336bee7d559ac3a654043e13 -SIZE (migrate-1.2.4.src.tar.gz) = 312245 +MD5 (migrate-1.7.6.1.src.tar.gz) = 5e8f03923ca2a12e7d3dd460c17679a1 +SIZE (migrate-1.7.6.1.src.tar.gz) = 384925 diff --git a/biology/migrate/files/patch-Makefile.in b/biology/migrate/files/patch-Makefile.in new file mode 100644 index 000000000000..2ab398e6810a --- /dev/null +++ b/biology/migrate/files/patch-Makefile.in @@ -0,0 +1,11 @@ +--- Makefile.in.orig Mon May 10 15:58:32 2004 ++++ Makefile.in Tue Jun 1 01:44:25 2004 +@@ -39,7 +39,7 @@ + COMMONFLAGS = -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE + #COMMONFLAGS = -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DNEWSTYLE -DMERSENNE_TWISTER + COMMONVFLAGS = $(COMMONFLAGS) +-CFLAGS = @CFLAGS@ $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\" ++CFLAGS += @CFLAGS@ $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\" + # IBM PowerPC compiler on macosx needs also CC=xlc + #CFLAGS = -O3 -Q -qunroll -qalloca -qhot -qipa -qthreaded -Dpowerpc $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\" $(MIGRATEVERSION)\\\"\" + THREADCFLAGS= @THREADCFLAGS@ diff --git a/biology/migrate/pkg-plist b/biology/migrate/pkg-plist index 460d05c482ef..62135c58c177 100644 --- a/biology/migrate/pkg-plist +++ b/biology/migrate/pkg-plist @@ -8,5 +8,16 @@ bin/migrate-n %%PORTDOCS%%%%DOCSDIR%%/graphics/migrate.gif %%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif %%PORTDOCS%%%%DOCSDIR%%/migrate.html +%%PORTDOCS%%%%EXAMPLESDIR%%/README +%%PORTDOCS%%%%EXAMPLESDIR%%/infile.benchmark +%%PORTDOCS%%%%EXAMPLESDIR%%/infile.ep +%%PORTDOCS%%%%EXAMPLESDIR%%/infile.msat +%%PORTDOCS%%%%EXAMPLESDIR%%/infile.seq +%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile +%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.benchmark +%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.ep +%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.msat +%%PORTDOCS%%%%EXAMPLESDIR%%/parmfile.seq +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%% %%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics %%PORTDOCS%%@dirrm %%DOCSDIR%% |