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authorSunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>2011-08-01 03:11:37 +0000
committerSunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>2011-08-01 03:11:37 +0000
commit1abb4c4130c818262cd745ede1752b5f38547bc0 (patch)
tree6f2edf4fe1bbddce52b4196a44e1a2b4f8783795 /biology
parentNew port ultracopier version 0.2.0.16: An advanced file copier (diff)
- Update to 0.39
Notes
Notes: svn path=/head/; revision=278672
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-Bio-Phylo/Makefile16
-rw-r--r--biology/p5-Bio-Phylo/distinfo4
-rw-r--r--biology/p5-Bio-Phylo/pkg-plist17
3 files changed, 34 insertions, 3 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 7e9fb6d39ea7..bb4ae6e16613 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -6,7 +6,7 @@
#
PORTNAME= Bio-Phylo
-PORTVERSION= 0.38
+PORTVERSION= 0.39
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:RVOSA
@@ -65,6 +65,7 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::NeXML::DOM::Element.3 \
Bio::Phylo::NeXML::DOM::Element::Libxml.3 \
Bio::Phylo::NeXML::DOM::Element::Twig.3 \
+ Bio::Phylo::NeXML::Entities.3 \
Bio::Phylo::NeXML::Meta.3 \
Bio::Phylo::NeXML::Meta::XMLLiteral.3 \
Bio::Phylo::NeXML::Writable.3 \
@@ -79,6 +80,18 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Parsers::Table.3 \
Bio::Phylo::Parsers::Taxlist.3 \
Bio::Phylo::Parsers::Tolweb.3 \
+ Bio::Phylo::Parsers::Ubiocbmeta.3 \
+ Bio::Phylo::Parsers::Ubiometa.3 \
+ Bio::Phylo::Parsers::Ubiosearch.3 \
+ Bio::Phylo::PhyloWS.3 \
+ Bio::Phylo::PhyloWS::Client.3 \
+ Bio::Phylo::PhyloWS::Resource.3 \
+ Bio::Phylo::PhyloWS::Resource::Description.3 \
+ Bio::Phylo::PhyloWS::Service.3 \
+ Bio::Phylo::PhyloWS::Service::Timetree.3 \
+ Bio::Phylo::PhyloWS::Service::Tolweb.3 \
+ Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3 \
+ Bio::Phylo::PhyloWS::Service::UbioNameBank.3 \
Bio::Phylo::Project.3 \
Bio::Phylo::Set.3 \
Bio::Phylo::Taxa.3 \
@@ -105,6 +118,7 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Unparsers::Pagel.3 \
Bio::Phylo::Unparsers::Phylip.3 \
Bio::Phylo::Unparsers::Phyloxml.3 \
+ Bio::Phylo::Unparsers::Rss1.3 \
Bio::Phylo::Util::CONSTANT.3 \
Bio::Phylo::Util::Dependency.3 \
Bio::Phylo::Util::Exceptions.3 \
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index b0587e57ed46..eddbeecb527f 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,2 +1,2 @@
-SHA256 (Bio-Phylo-0.38.tar.gz) = 8fc920aa02fa49b5d7ddcb32440cb04850d993e67afe25769b28c40646db239d
-SIZE (Bio-Phylo-0.38.tar.gz) = 330826
+SHA256 (Bio-Phylo-0.39.tar.gz) = 0800abe3b70036d0b006841498d385083623c16a1fef3e33c952d3c6a1c23400
+SIZE (Bio-Phylo-0.39.tar.gz) = 352290
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index 94b4195e3cf0..afb5e47569cd 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -82,11 +82,28 @@
%%SITE_PERL%%/Bio/Phylo/Util/OptionalInterface.pm
%%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo/.packlist
+%%SITE_PERL%%/Bio/Phylo/PhyloWS.pm
+%%SITE_PERL%%/Bio/Phylo/NeXML/Entities.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Rss1.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiocbmeta.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiosearch.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiometa.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Client.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/Timetree.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/Tolweb.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource.pm
+%%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource/Description.pm
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
@dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
+@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Service
+@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource
+@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS
@dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element